Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1330

Experiment: m.b. Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1328 and B158DRAFT_1329 overlap by 11 nucleotidesB158DRAFT_1329 and B158DRAFT_1330 overlap by 4 nucleotidesB158DRAFT_1330 and B158DRAFT_1331 are separated by 3 nucleotides B158DRAFT_1328: B158DRAFT_1328 - c-type cytochrome biogenesis protein CcmF, at 1,369,794 to 1,371,782 _1328 B158DRAFT_1329: B158DRAFT_1329 - periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily, at 1,371,772 to 1,372,338 _1329 B158DRAFT_1330: B158DRAFT_1330 - Uncharacterized protein involved in biosynthesis of c-type cytochromes, at 1,372,335 to 1,372,769 _1330 B158DRAFT_1331: B158DRAFT_1331 - Cytochrome c biogenesis factor, at 1,372,773 to 1,373,798 _1331 Position (kb) 1372 1373Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1371.501 kb on + strand, within B158DRAFT_1328at 1371.510 kb on + strand, within B158DRAFT_1328at 1371.511 kb on - strand, within B158DRAFT_1328at 1371.587 kb on + strandat 1371.661 kb on + strandat 1371.797 kb on + strandat 1371.805 kb on - strandat 1371.828 kb on + strandat 1371.924 kb on + strand, within B158DRAFT_1329at 1371.931 kb on + strand, within B158DRAFT_1329at 1371.949 kb on + strand, within B158DRAFT_1329at 1371.957 kb on - strand, within B158DRAFT_1329at 1371.957 kb on - strand, within B158DRAFT_1329at 1372.163 kb on - strand, within B158DRAFT_1329at 1372.191 kb on - strand, within B158DRAFT_1329at 1372.350 kb on + strandat 1372.603 kb on + strand, within B158DRAFT_1330at 1372.611 kb on - strand, within B158DRAFT_1330at 1372.723 kb on + strand, within B158DRAFT_1330at 1372.767 kb on - strandat 1372.796 kb on - strandat 1372.808 kb on + strandat 1372.816 kb on - strandat 1372.816 kb on - strandat 1372.951 kb on + strand, within B158DRAFT_1331at 1373.100 kb on + strand, within B158DRAFT_1331at 1373.108 kb on - strand, within B158DRAFT_1331at 1373.134 kb on + strand, within B158DRAFT_1331at 1373.164 kb on + strand, within B158DRAFT_1331at 1373.259 kb on + strand, within B158DRAFT_1331at 1373.269 kb on + strand, within B158DRAFT_1331at 1373.279 kb on + strand, within B158DRAFT_1331at 1373.319 kb on - strand, within B158DRAFT_1331at 1373.405 kb on + strand, within B158DRAFT_1331at 1373.405 kb on + strand, within B158DRAFT_1331at 1373.405 kb on + strand, within B158DRAFT_1331at 1373.405 kb on + strand, within B158DRAFT_1331at 1373.413 kb on - strand, within B158DRAFT_1331at 1373.413 kb on - strand, within B158DRAFT_1331at 1373.413 kb on - strand, within B158DRAFT_1331at 1373.413 kb on - strand, within B158DRAFT_1331at 1373.413 kb on - strand, within B158DRAFT_1331at 1373.437 kb on - strand, within B158DRAFT_1331at 1373.520 kb on + strand, within B158DRAFT_1331at 1373.537 kb on + strand, within B158DRAFT_1331at 1373.542 kb on + strand, within B158DRAFT_1331at 1373.552 kb on + strand, within B158DRAFT_1331at 1373.572 kb on + strand, within B158DRAFT_1331at 1373.572 kb on + strand, within B158DRAFT_1331at 1373.588 kb on + strand, within B158DRAFT_1331at 1373.596 kb on - strand, within B158DRAFT_1331at 1373.611 kb on + strand, within B158DRAFT_1331at 1373.611 kb on + strand, within B158DRAFT_1331at 1373.611 kb on + strand, within B158DRAFT_1331at 1373.622 kb on - strand, within B158DRAFT_1331at 1373.634 kb on + strand, within B158DRAFT_1331at 1373.675 kb on - strand, within B158DRAFT_1331at 1373.692 kb on + strand, within B158DRAFT_1331at 1373.692 kb on + strand, within B158DRAFT_1331at 1373.692 kb on + strand, within B158DRAFT_1331at 1373.692 kb on + strand, within B158DRAFT_1331at 1373.700 kb on - strandat 1373.700 kb on - strandat 1373.700 kb on - strandat 1373.700 kb on - strandat 1373.702 kb on + strandat 1373.715 kb on - strandat 1373.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol%
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1,371,501 + B158DRAFT_1328 0.86 +4.1
1,371,510 + B158DRAFT_1328 0.86 +3.7
1,371,511 - B158DRAFT_1328 0.86 +4.0
1,371,587 + +5.4
1,371,661 + +3.1
1,371,797 + +2.9
1,371,805 - +2.8
1,371,828 + +3.0
1,371,924 + B158DRAFT_1329 0.27 +3.4
1,371,931 + B158DRAFT_1329 0.28 +3.6
1,371,949 + B158DRAFT_1329 0.31 +2.4
1,371,957 - B158DRAFT_1329 0.33 +4.4
1,371,957 - B158DRAFT_1329 0.33 +3.0
1,372,163 - B158DRAFT_1329 0.69 +3.4
1,372,191 - B158DRAFT_1329 0.74 +3.2
1,372,350 + +3.9
1,372,603 + B158DRAFT_1330 0.62 +3.8
1,372,611 - B158DRAFT_1330 0.63 +2.3
1,372,723 + B158DRAFT_1330 0.89 +2.2
1,372,767 - +2.7
1,372,796 - +2.8
1,372,808 + +3.0
1,372,816 - +3.4
1,372,816 - +3.4
1,372,951 + B158DRAFT_1331 0.17 +2.6
1,373,100 + B158DRAFT_1331 0.32 +2.5
1,373,108 - B158DRAFT_1331 0.33 +3.5
1,373,134 + B158DRAFT_1331 0.35 +2.9
1,373,164 + B158DRAFT_1331 0.38 +2.4
1,373,259 + B158DRAFT_1331 0.47 +3.2
1,373,269 + B158DRAFT_1331 0.48 +2.9
1,373,279 + B158DRAFT_1331 0.49 +2.1
1,373,319 - B158DRAFT_1331 0.53 +3.0
1,373,405 + B158DRAFT_1331 0.62 +1.8
1,373,405 + B158DRAFT_1331 0.62 +0.8
1,373,405 + B158DRAFT_1331 0.62 +0.4
1,373,405 + B158DRAFT_1331 0.62 +1.2
1,373,413 - B158DRAFT_1331 0.62 +1.1
1,373,413 - B158DRAFT_1331 0.62 +2.7
1,373,413 - B158DRAFT_1331 0.62 +0.8
1,373,413 - B158DRAFT_1331 0.62 +1.3
1,373,413 - B158DRAFT_1331 0.62 +2.1
1,373,437 - B158DRAFT_1331 0.65 +0.7
1,373,520 + B158DRAFT_1331 0.73 +1.5
1,373,537 + B158DRAFT_1331 0.74 +1.6
1,373,542 + B158DRAFT_1331 0.75 +0.7
1,373,552 + B158DRAFT_1331 0.76 +1.4
1,373,572 + B158DRAFT_1331 0.78 +0.3
1,373,572 + B158DRAFT_1331 0.78 +0.3
1,373,588 + B158DRAFT_1331 0.79 +0.6
1,373,596 - B158DRAFT_1331 0.80 -0.1
1,373,611 + B158DRAFT_1331 0.82 +0.7
1,373,611 + B158DRAFT_1331 0.82 +1.1
1,373,611 + B158DRAFT_1331 0.82 +0.9
1,373,622 - B158DRAFT_1331 0.83 +2.4
1,373,634 + B158DRAFT_1331 0.84 +1.1
1,373,675 - B158DRAFT_1331 0.88 +1.2
1,373,692 + B158DRAFT_1331 0.90 +1.3
1,373,692 + B158DRAFT_1331 0.90 +0.2
1,373,692 + B158DRAFT_1331 0.90 +1.0
1,373,692 + B158DRAFT_1331 0.90 +0.5
1,373,700 - +1.3
1,373,700 - +0.4
1,373,700 - +1.7
1,373,700 - +1.2
1,373,702 + -0.1
1,373,715 - +0.6
1,373,755 - +0.4

Or see this region's nucleotide sequence