Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2200

Experiment: m.b. Fusidic 0.00049 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2199 and B158DRAFT_2200 overlap by 4 nucleotidesB158DRAFT_2200 and B158DRAFT_2201 overlap by 4 nucleotides B158DRAFT_2199: B158DRAFT_2199 - multisubunit sodium/proton antiporter, MrpB subunit (TC 2.A.63.1), at 342,929 to 343,996 _2199 B158DRAFT_2200: B158DRAFT_2200 - multisubunit sodium/proton antiporter, MrpC subunit (TC 2.A.63.1), at 343,993 to 344,361 _2200 B158DRAFT_2201: B158DRAFT_2201 - multisubunit sodium/proton antiporter, MrpD subunit (TC 2.A.63.1), at 344,358 to 345,836 _2201 Position (kb) 343 344 345Strain fitness (log2 ratio) -1 0 1 2at 343.225 kb on - strand, within B158DRAFT_2199at 343.225 kb on - strand, within B158DRAFT_2199at 343.363 kb on - strand, within B158DRAFT_2199at 343.774 kb on - strand, within B158DRAFT_2199at 343.819 kb on + strand, within B158DRAFT_2199at 343.914 kb on + strandat 344.257 kb on + strand, within B158DRAFT_2200at 344.265 kb on - strand, within B158DRAFT_2200at 344.338 kb on + strandat 344.719 kb on - strand, within B158DRAFT_2201at 344.794 kb on + strand, within B158DRAFT_2201at 345.040 kb on - strand, within B158DRAFT_2201at 345.234 kb on + strand, within B158DRAFT_2201

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.00049 mg/ml
remove
343,225 - B158DRAFT_2199 0.28 -0.5
343,225 - B158DRAFT_2199 0.28 +1.4
343,363 - B158DRAFT_2199 0.41 -0.7
343,774 - B158DRAFT_2199 0.79 +0.5
343,819 + B158DRAFT_2199 0.83 +1.6
343,914 + -0.2
344,257 + B158DRAFT_2200 0.72 +0.8
344,265 - B158DRAFT_2200 0.74 +1.6
344,338 + -1.4
344,719 - B158DRAFT_2201 0.24 -0.9
344,794 + B158DRAFT_2201 0.29 -1.3
345,040 - B158DRAFT_2201 0.46 +2.5
345,234 + B158DRAFT_2201 0.59 +0.1

Or see this region's nucleotide sequence