Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1361

Experiment: m.b. Fusidic 0.00049 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1359 and B158DRAFT_1360 are separated by 59 nucleotidesB158DRAFT_1360 and B158DRAFT_1361 are separated by 126 nucleotidesB158DRAFT_1361 and B158DRAFT_1362 are separated by 84 nucleotidesB158DRAFT_1362 and B158DRAFT_1363 are separated by 52 nucleotides B158DRAFT_1359: B158DRAFT_1359 - hypothetical protein, at 1,403,628 to 1,405,550 _1359 B158DRAFT_1360: B158DRAFT_1360 - hypothetical protein, at 1,405,610 to 1,406,071 _1360 B158DRAFT_1361: B158DRAFT_1361 - Zn-dependent dipeptidase, microsomal dipeptidase homolog, at 1,406,198 to 1,407,364 _1361 B158DRAFT_1362: B158DRAFT_1362 - transcriptional regulator, TraR/DksA family, at 1,407,449 to 1,407,718 _1362 B158DRAFT_1363: B158DRAFT_1363 - Pseudouridylate synthases, 23S RNA-specific, at 1,407,771 to 1,408,673 _1363 Position (kb) 1406 1407 1408Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1405.214 kb on + strand, within B158DRAFT_1359at 1405.291 kb on + strand, within B158DRAFT_1359at 1405.291 kb on + strand, within B158DRAFT_1359at 1405.299 kb on - strand, within B158DRAFT_1359at 1405.371 kb on + strandat 1405.371 kb on + strandat 1405.371 kb on + strandat 1405.371 kb on + strandat 1405.379 kb on - strandat 1405.379 kb on - strandat 1405.379 kb on - strandat 1405.379 kb on - strandat 1405.567 kb on + strandat 1405.577 kb on - strandat 1405.598 kb on + strandat 1405.612 kb on + strandat 1405.620 kb on + strandat 1405.620 kb on + strandat 1405.620 kb on - strandat 1405.628 kb on - strandat 1405.628 kb on - strandat 1405.669 kb on + strand, within B158DRAFT_1360at 1405.685 kb on - strand, within B158DRAFT_1360at 1405.745 kb on + strand, within B158DRAFT_1360at 1405.746 kb on + strand, within B158DRAFT_1360at 1405.753 kb on - strand, within B158DRAFT_1360at 1405.753 kb on - strand, within B158DRAFT_1360at 1405.767 kb on + strand, within B158DRAFT_1360at 1405.767 kb on + strand, within B158DRAFT_1360at 1405.789 kb on + strand, within B158DRAFT_1360at 1405.837 kb on + strand, within B158DRAFT_1360at 1405.845 kb on - strand, within B158DRAFT_1360at 1406.019 kb on - strand, within B158DRAFT_1360at 1406.307 kb on + strandat 1406.307 kb on + strandat 1406.384 kb on + strand, within B158DRAFT_1361at 1406.520 kb on + strand, within B158DRAFT_1361at 1406.672 kb on - strand, within B158DRAFT_1361at 1406.674 kb on + strand, within B158DRAFT_1361at 1406.674 kb on + strand, within B158DRAFT_1361at 1406.748 kb on + strand, within B158DRAFT_1361at 1406.870 kb on + strand, within B158DRAFT_1361at 1407.040 kb on + strand, within B158DRAFT_1361at 1407.148 kb on + strand, within B158DRAFT_1361at 1407.150 kb on - strand, within B158DRAFT_1361at 1407.151 kb on - strand, within B158DRAFT_1361at 1407.153 kb on + strand, within B158DRAFT_1361at 1407.168 kb on - strand, within B158DRAFT_1361at 1407.246 kb on + strand, within B158DRAFT_1361at 1407.259 kb on - strandat 1407.290 kb on + strandat 1407.290 kb on + strandat 1407.290 kb on + strandat 1407.290 kb on + strandat 1407.298 kb on - strandat 1407.298 kb on - strandat 1407.298 kb on - strandat 1407.317 kb on + strandat 1407.332 kb on - strandat 1407.353 kb on + strandat 1407.360 kb on - strandat 1407.380 kb on + strandat 1407.390 kb on + strandat 1407.390 kb on + strandat 1407.481 kb on + strand, within B158DRAFT_1362at 1407.490 kb on - strand, within B158DRAFT_1362at 1407.610 kb on - strand, within B158DRAFT_1362at 1407.610 kb on - strand, within B158DRAFT_1362at 1407.707 kb on + strandat 1407.720 kb on + strandat 1407.835 kb on - strandat 1407.881 kb on - strand, within B158DRAFT_1363at 1407.901 kb on + strand, within B158DRAFT_1363at 1407.901 kb on + strand, within B158DRAFT_1363at 1407.909 kb on - strand, within B158DRAFT_1363at 1407.909 kb on - strand, within B158DRAFT_1363at 1407.909 kb on - strand, within B158DRAFT_1363at 1407.909 kb on - strand, within B158DRAFT_1363at 1407.909 kb on - strand, within B158DRAFT_1363at 1407.909 kb on - strand, within B158DRAFT_1363at 1407.909 kb on - strand, within B158DRAFT_1363at 1407.909 kb on - strand, within B158DRAFT_1363at 1407.939 kb on + strand, within B158DRAFT_1363at 1407.980 kb on - strand, within B158DRAFT_1363at 1407.985 kb on + strand, within B158DRAFT_1363at 1407.985 kb on + strand, within B158DRAFT_1363at 1407.993 kb on - strand, within B158DRAFT_1363at 1407.995 kb on + strand, within B158DRAFT_1363at 1408.003 kb on - strand, within B158DRAFT_1363at 1408.006 kb on + strand, within B158DRAFT_1363at 1408.014 kb on - strand, within B158DRAFT_1363at 1408.014 kb on - strand, within B158DRAFT_1363at 1408.025 kb on + strand, within B158DRAFT_1363at 1408.025 kb on + strand, within B158DRAFT_1363at 1408.033 kb on - strand, within B158DRAFT_1363at 1408.097 kb on + strand, within B158DRAFT_1363at 1408.161 kb on + strand, within B158DRAFT_1363at 1408.164 kb on - strand, within B158DRAFT_1363at 1408.168 kb on + strand, within B158DRAFT_1363at 1408.168 kb on + strand, within B158DRAFT_1363at 1408.176 kb on - strand, within B158DRAFT_1363at 1408.257 kb on - strand, within B158DRAFT_1363at 1408.270 kb on + strand, within B158DRAFT_1363

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.00049 mg/ml
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1,405,214 + B158DRAFT_1359 0.82 -2.3
1,405,291 + B158DRAFT_1359 0.86 +0.3
1,405,291 + B158DRAFT_1359 0.86 -1.2
1,405,299 - B158DRAFT_1359 0.87 -0.7
1,405,371 + +1.8
1,405,371 + -1.5
1,405,371 + -0.7
1,405,371 + -1.1
1,405,379 - -1.8
1,405,379 - -0.7
1,405,379 - -1.3
1,405,379 - -0.4
1,405,567 + -0.9
1,405,577 - -0.2
1,405,598 + -0.6
1,405,612 + +0.7
1,405,620 + -1.0
1,405,620 + -1.0
1,405,620 - -0.7
1,405,628 - +0.3
1,405,628 - +3.0
1,405,669 + B158DRAFT_1360 0.13 -2.1
1,405,685 - B158DRAFT_1360 0.16 +0.2
1,405,745 + B158DRAFT_1360 0.29 -0.3
1,405,746 + B158DRAFT_1360 0.29 -1.0
1,405,753 - B158DRAFT_1360 0.31 +0.6
1,405,753 - B158DRAFT_1360 0.31 -1.3
1,405,767 + B158DRAFT_1360 0.34 -1.2
1,405,767 + B158DRAFT_1360 0.34 -1.0
1,405,789 + B158DRAFT_1360 0.39 +1.4
1,405,837 + B158DRAFT_1360 0.49 -0.9
1,405,845 - B158DRAFT_1360 0.51 -1.7
1,406,019 - B158DRAFT_1360 0.89 +0.1
1,406,307 + -1.0
1,406,307 + +0.5
1,406,384 + B158DRAFT_1361 0.16 +0.6
1,406,520 + B158DRAFT_1361 0.28 +0.8
1,406,672 - B158DRAFT_1361 0.41 -0.8
1,406,674 + B158DRAFT_1361 0.41 -1.1
1,406,674 + B158DRAFT_1361 0.41 +0.1
1,406,748 + B158DRAFT_1361 0.47 +0.7
1,406,870 + B158DRAFT_1361 0.58 -0.6
1,407,040 + B158DRAFT_1361 0.72 -1.1
1,407,148 + B158DRAFT_1361 0.81 -0.1
1,407,150 - B158DRAFT_1361 0.82 -0.9
1,407,151 - B158DRAFT_1361 0.82 +1.0
1,407,153 + B158DRAFT_1361 0.82 +0.3
1,407,168 - B158DRAFT_1361 0.83 -0.5
1,407,246 + B158DRAFT_1361 0.90 -0.3
1,407,259 - +1.0
1,407,290 + -0.9
1,407,290 + +0.0
1,407,290 + -3.0
1,407,290 + -0.4
1,407,298 - +0.7
1,407,298 - +2.1
1,407,298 - -0.5
1,407,317 + +0.1
1,407,332 - -1.2
1,407,353 + +0.4
1,407,360 - -0.3
1,407,380 + -0.5
1,407,390 + -0.8
1,407,390 + -0.6
1,407,481 + B158DRAFT_1362 0.12 +0.9
1,407,490 - B158DRAFT_1362 0.15 -1.8
1,407,610 - B158DRAFT_1362 0.60 +0.2
1,407,610 - B158DRAFT_1362 0.60 -0.6
1,407,707 + +1.1
1,407,720 + -0.2
1,407,835 - +1.0
1,407,881 - B158DRAFT_1363 0.12 +1.5
1,407,901 + B158DRAFT_1363 0.14 +1.0
1,407,901 + B158DRAFT_1363 0.14 -2.0
1,407,909 - B158DRAFT_1363 0.15 -0.8
1,407,909 - B158DRAFT_1363 0.15 -2.2
1,407,909 - B158DRAFT_1363 0.15 +1.5
1,407,909 - B158DRAFT_1363 0.15 -0.9
1,407,909 - B158DRAFT_1363 0.15 +0.7
1,407,909 - B158DRAFT_1363 0.15 +1.5
1,407,909 - B158DRAFT_1363 0.15 +0.2
1,407,909 - B158DRAFT_1363 0.15 -1.1
1,407,939 + B158DRAFT_1363 0.19 -1.3
1,407,980 - B158DRAFT_1363 0.23 -1.5
1,407,985 + B158DRAFT_1363 0.24 -0.4
1,407,985 + B158DRAFT_1363 0.24 -0.3
1,407,993 - B158DRAFT_1363 0.25 -0.9
1,407,995 + B158DRAFT_1363 0.25 +0.8
1,408,003 - B158DRAFT_1363 0.26 -0.8
1,408,006 + B158DRAFT_1363 0.26 -0.8
1,408,014 - B158DRAFT_1363 0.27 -0.9
1,408,014 - B158DRAFT_1363 0.27 -2.3
1,408,025 + B158DRAFT_1363 0.28 -1.4
1,408,025 + B158DRAFT_1363 0.28 -2.0
1,408,033 - B158DRAFT_1363 0.29 -3.1
1,408,097 + B158DRAFT_1363 0.36 +0.2
1,408,161 + B158DRAFT_1363 0.43 -1.2
1,408,164 - B158DRAFT_1363 0.44 +0.2
1,408,168 + B158DRAFT_1363 0.44 -2.8
1,408,168 + B158DRAFT_1363 0.44 -0.4
1,408,176 - B158DRAFT_1363 0.45 -1.0
1,408,257 - B158DRAFT_1363 0.54 +0.4
1,408,270 + B158DRAFT_1363 0.55 -0.6

Or see this region's nucleotide sequence