Experiment: m.b. Fusidic 0.00049 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1338 and B158DRAFT_1339 are separated by 141 nucleotides B158DRAFT_1339 and B158DRAFT_1340 are separated by 130 nucleotides B158DRAFT_1340 and B158DRAFT_1341 overlap by 8 nucleotides
B158DRAFT_1338: B158DRAFT_1338 - TIGR01777 family protein, at 1,379,528 to 1,380,424
_1338
B158DRAFT_1339: B158DRAFT_1339 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 1,380,566 to 1,381,939
_1339
B158DRAFT_1340: B158DRAFT_1340 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 1,382,070 to 1,382,633
_1340
B158DRAFT_1341: B158DRAFT_1341 - aminodeoxychorismate synthase, component I, bacterial clade, at 1,382,626 to 1,384,044
_1341
Position (kb)
1380
1381
1382 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1379.580 kb on + strand at 1379.590 kb on + strand at 1379.658 kb on - strand, within B158DRAFT_1338 at 1379.669 kb on + strand, within B158DRAFT_1338 at 1379.669 kb on + strand, within B158DRAFT_1338 at 1379.677 kb on - strand, within B158DRAFT_1338 at 1379.677 kb on - strand, within B158DRAFT_1338 at 1379.677 kb on - strand, within B158DRAFT_1338 at 1379.677 kb on - strand, within B158DRAFT_1338 at 1379.677 kb on - strand, within B158DRAFT_1338 at 1379.696 kb on + strand, within B158DRAFT_1338 at 1379.696 kb on + strand, within B158DRAFT_1338 at 1379.696 kb on + strand, within B158DRAFT_1338 at 1379.696 kb on + strand, within B158DRAFT_1338 at 1379.704 kb on - strand, within B158DRAFT_1338 at 1379.704 kb on - strand, within B158DRAFT_1338 at 1379.778 kb on + strand, within B158DRAFT_1338 at 1379.778 kb on + strand, within B158DRAFT_1338 at 1379.786 kb on - strand, within B158DRAFT_1338 at 1379.786 kb on - strand, within B158DRAFT_1338 at 1379.803 kb on - strand, within B158DRAFT_1338 at 1379.853 kb on - strand, within B158DRAFT_1338 at 1379.893 kb on - strand, within B158DRAFT_1338 at 1379.919 kb on + strand, within B158DRAFT_1338 at 1379.919 kb on + strand, within B158DRAFT_1338 at 1379.923 kb on + strand, within B158DRAFT_1338 at 1379.923 kb on + strand, within B158DRAFT_1338 at 1379.923 kb on + strand, within B158DRAFT_1338 at 1379.923 kb on + strand, within B158DRAFT_1338 at 1379.931 kb on - strand, within B158DRAFT_1338 at 1379.931 kb on - strand, within B158DRAFT_1338 at 1379.958 kb on + strand, within B158DRAFT_1338 at 1379.964 kb on - strand, within B158DRAFT_1338 at 1380.029 kb on + strand, within B158DRAFT_1338 at 1380.104 kb on + strand, within B158DRAFT_1338 at 1380.104 kb on + strand, within B158DRAFT_1338 at 1380.104 kb on + strand, within B158DRAFT_1338 at 1380.112 kb on - strand, within B158DRAFT_1338 at 1380.112 kb on - strand, within B158DRAFT_1338 at 1380.112 kb on - strand, within B158DRAFT_1338 at 1380.145 kb on + strand, within B158DRAFT_1338 at 1380.160 kb on - strand, within B158DRAFT_1338 at 1380.165 kb on - strand, within B158DRAFT_1338 at 1380.193 kb on + strand, within B158DRAFT_1338 at 1380.198 kb on + strand, within B158DRAFT_1338 at 1380.198 kb on + strand, within B158DRAFT_1338 at 1380.206 kb on - strand, within B158DRAFT_1338 at 1380.206 kb on - strand, within B158DRAFT_1338 at 1380.206 kb on - strand, within B158DRAFT_1338 at 1380.206 kb on - strand, within B158DRAFT_1338 at 1380.217 kb on + strand, within B158DRAFT_1338 at 1380.287 kb on - strand, within B158DRAFT_1338 at 1380.322 kb on + strand, within B158DRAFT_1338 at 1380.324 kb on + strand, within B158DRAFT_1338 at 1380.458 kb on - strand at 1380.474 kb on - strand at 1380.526 kb on + strand at 1380.526 kb on + strand at 1380.526 kb on + strand at 1380.526 kb on + strand at 1380.526 kb on + strand at 1380.534 kb on - strand at 1380.534 kb on - strand at 1380.534 kb on - strand at 1380.534 kb on - strand at 1380.578 kb on + strand at 1380.624 kb on + strand at 1380.660 kb on + strand at 1380.685 kb on + strand at 1380.791 kb on + strand, within B158DRAFT_1339 at 1380.811 kb on - strand, within B158DRAFT_1339 at 1380.811 kb on - strand, within B158DRAFT_1339 at 1380.818 kb on + strand, within B158DRAFT_1339 at 1380.841 kb on + strand, within B158DRAFT_1339 at 1380.841 kb on + strand, within B158DRAFT_1339 at 1380.841 kb on + strand, within B158DRAFT_1339 at 1380.841 kb on + strand, within B158DRAFT_1339 at 1380.849 kb on - strand, within B158DRAFT_1339 at 1380.849 kb on - strand, within B158DRAFT_1339 at 1380.905 kb on - strand, within B158DRAFT_1339 at 1380.930 kb on - strand, within B158DRAFT_1339 at 1380.978 kb on + strand, within B158DRAFT_1339 at 1381.073 kb on + strand, within B158DRAFT_1339 at 1381.135 kb on + strand, within B158DRAFT_1339 at 1381.135 kb on + strand, within B158DRAFT_1339 at 1381.135 kb on + strand, within B158DRAFT_1339 at 1381.135 kb on + strand, within B158DRAFT_1339 at 1381.135 kb on + strand, within B158DRAFT_1339 at 1381.135 kb on + strand, within B158DRAFT_1339 at 1381.135 kb on + strand, within B158DRAFT_1339 at 1381.143 kb on - strand, within B158DRAFT_1339 at 1381.143 kb on - strand, within B158DRAFT_1339 at 1381.143 kb on - strand, within B158DRAFT_1339 at 1381.143 kb on - strand, within B158DRAFT_1339 at 1381.143 kb on - strand, within B158DRAFT_1339 at 1381.143 kb on - strand, within B158DRAFT_1339 at 1381.143 kb on - strand, within B158DRAFT_1339 at 1381.143 kb on - strand, within B158DRAFT_1339 at 1381.153 kb on - strand, within B158DRAFT_1339 at 1381.222 kb on + strand, within B158DRAFT_1339 at 1381.282 kb on - strand, within B158DRAFT_1339 at 1381.402 kb on - strand, within B158DRAFT_1339 at 1381.410 kb on + strand, within B158DRAFT_1339 at 1381.741 kb on - strand, within B158DRAFT_1339 at 1381.761 kb on + strand, within B158DRAFT_1339 at 1381.762 kb on - strand, within B158DRAFT_1339 at 1381.762 kb on - strand, within B158DRAFT_1339 at 1381.774 kb on + strand, within B158DRAFT_1339 at 1381.854 kb on - strand at 1381.854 kb on - strand at 1381.868 kb on + strand at 1381.873 kb on + strand at 1381.873 kb on + strand at 1381.873 kb on + strand at 1381.873 kb on + strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.892 kb on + strand at 1381.892 kb on + strand at 1381.898 kb on + strand at 1381.916 kb on - strand at 1381.990 kb on + strand at 1382.000 kb on + strand at 1382.003 kb on - strand at 1382.068 kb on + strand at 1382.068 kb on + strand at 1382.075 kb on - strand at 1382.077 kb on - strand at 1382.077 kb on - strand at 1382.138 kb on + strand, within B158DRAFT_1340 at 1382.166 kb on + strand, within B158DRAFT_1340 at 1382.199 kb on - strand, within B158DRAFT_1340 at 1382.204 kb on - strand, within B158DRAFT_1340 at 1382.242 kb on - strand, within B158DRAFT_1340 at 1382.267 kb on + strand, within B158DRAFT_1340 at 1382.299 kb on + strand, within B158DRAFT_1340 at 1382.300 kb on + strand, within B158DRAFT_1340 at 1382.382 kb on - strand, within B158DRAFT_1340 at 1382.395 kb on + strand, within B158DRAFT_1340 at 1382.395 kb on + strand, within B158DRAFT_1340 at 1382.400 kb on + strand, within B158DRAFT_1340 at 1382.403 kb on - strand, within B158DRAFT_1340 at 1382.405 kb on + strand, within B158DRAFT_1340 at 1382.405 kb on + strand, within B158DRAFT_1340 at 1382.405 kb on + strand, within B158DRAFT_1340 at 1382.405 kb on + strand, within B158DRAFT_1340 at 1382.408 kb on - strand, within B158DRAFT_1340 at 1382.410 kb on + strand, within B158DRAFT_1340 at 1382.413 kb on - strand, within B158DRAFT_1340 at 1382.413 kb on - strand, within B158DRAFT_1340 at 1382.418 kb on - strand, within B158DRAFT_1340 at 1382.460 kb on + strand, within B158DRAFT_1340 at 1382.460 kb on + strand, within B158DRAFT_1340 at 1382.503 kb on + strand, within B158DRAFT_1340 at 1382.503 kb on + strand, within B158DRAFT_1340 at 1382.556 kb on + strand, within B158DRAFT_1340 at 1382.558 kb on + strand, within B158DRAFT_1340 at 1382.558 kb on + strand, within B158DRAFT_1340 at 1382.598 kb on + strand at 1382.604 kb on + strand at 1382.609 kb on + strand at 1382.612 kb on - strand at 1382.614 kb on + strand at 1382.644 kb on + strand at 1382.645 kb on + strand at 1382.653 kb on - strand at 1382.701 kb on - strand at 1382.707 kb on + strand at 1382.715 kb on - strand at 1382.715 kb on - strand at 1382.758 kb on + strand at 1382.803 kb on + strand, within B158DRAFT_1341 at 1382.803 kb on + strand, within B158DRAFT_1341 at 1382.803 kb on + strand, within B158DRAFT_1341 at 1382.808 kb on + strand, within B158DRAFT_1341 at 1382.816 kb on - strand, within B158DRAFT_1341 at 1382.823 kb on + strand, within B158DRAFT_1341 at 1382.834 kb on - strand, within B158DRAFT_1341 at 1382.859 kb on + strand, within B158DRAFT_1341 at 1382.867 kb on - strand, within B158DRAFT_1341 at 1382.872 kb on + strand, within B158DRAFT_1341 at 1382.872 kb on + strand, within B158DRAFT_1341 at 1382.872 kb on + strand, within B158DRAFT_1341 at 1382.880 kb on - strand, within B158DRAFT_1341 at 1382.880 kb on - strand, within B158DRAFT_1341
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.00049 mg/ml remove 1,379,580 + -0.9 1,379,590 + +0.3 1,379,658 - B158DRAFT_1338 0.14 +0.4 1,379,669 + B158DRAFT_1338 0.16 -0.3 1,379,669 + B158DRAFT_1338 0.16 -2.2 1,379,677 - B158DRAFT_1338 0.17 -0.8 1,379,677 - B158DRAFT_1338 0.17 -1.4 1,379,677 - B158DRAFT_1338 0.17 +1.4 1,379,677 - B158DRAFT_1338 0.17 +0.9 1,379,677 - B158DRAFT_1338 0.17 -0.6 1,379,696 + B158DRAFT_1338 0.19 -0.1 1,379,696 + B158DRAFT_1338 0.19 +0.1 1,379,696 + B158DRAFT_1338 0.19 -0.7 1,379,696 + B158DRAFT_1338 0.19 -1.2 1,379,704 - B158DRAFT_1338 0.20 +0.3 1,379,704 - B158DRAFT_1338 0.20 -1.0 1,379,778 + B158DRAFT_1338 0.28 -2.0 1,379,778 + B158DRAFT_1338 0.28 -1.9 1,379,786 - B158DRAFT_1338 0.29 -1.1 1,379,786 - B158DRAFT_1338 0.29 +2.6 1,379,803 - B158DRAFT_1338 0.31 -0.6 1,379,853 - B158DRAFT_1338 0.36 +1.9 1,379,893 - B158DRAFT_1338 0.41 -0.7 1,379,919 + B158DRAFT_1338 0.44 -0.6 1,379,919 + B158DRAFT_1338 0.44 +0.0 1,379,923 + B158DRAFT_1338 0.44 -0.8 1,379,923 + B158DRAFT_1338 0.44 -2.8 1,379,923 + B158DRAFT_1338 0.44 +1.4 1,379,923 + B158DRAFT_1338 0.44 -1.0 1,379,931 - B158DRAFT_1338 0.45 -1.6 1,379,931 - B158DRAFT_1338 0.45 -2.5 1,379,958 + B158DRAFT_1338 0.48 -1.3 1,379,964 - B158DRAFT_1338 0.49 -0.9 1,380,029 + B158DRAFT_1338 0.56 -0.6 1,380,104 + B158DRAFT_1338 0.64 -1.0 1,380,104 + B158DRAFT_1338 0.64 -0.9 1,380,104 + B158DRAFT_1338 0.64 -0.8 1,380,112 - B158DRAFT_1338 0.65 +0.1 1,380,112 - B158DRAFT_1338 0.65 -0.7 1,380,112 - B158DRAFT_1338 0.65 -2.3 1,380,145 + B158DRAFT_1338 0.69 -1.3 1,380,160 - B158DRAFT_1338 0.70 -0.5 1,380,165 - B158DRAFT_1338 0.71 -1.0 1,380,193 + B158DRAFT_1338 0.74 +0.1 1,380,198 + B158DRAFT_1338 0.75 +1.2 1,380,198 + B158DRAFT_1338 0.75 -1.1 1,380,206 - B158DRAFT_1338 0.76 -1.3 1,380,206 - B158DRAFT_1338 0.76 +0.3 1,380,206 - B158DRAFT_1338 0.76 -0.9 1,380,206 - B158DRAFT_1338 0.76 +0.5 1,380,217 + B158DRAFT_1338 0.77 -1.6 1,380,287 - B158DRAFT_1338 0.85 +0.1 1,380,322 + B158DRAFT_1338 0.89 -1.6 1,380,324 + B158DRAFT_1338 0.89 -1.2 1,380,458 - -1.1 1,380,474 - -0.6 1,380,526 + +0.4 1,380,526 + -1.5 1,380,526 + -0.1 1,380,526 + -0.6 1,380,526 + +2.9 1,380,534 - +0.4 1,380,534 - -1.5 1,380,534 - -2.1 1,380,534 - -0.3 1,380,578 + -0.7 1,380,624 + -1.7 1,380,660 + -2.0 1,380,685 + -1.1 1,380,791 + B158DRAFT_1339 0.16 -1.0 1,380,811 - B158DRAFT_1339 0.18 -0.8 1,380,811 - B158DRAFT_1339 0.18 +2.0 1,380,818 + B158DRAFT_1339 0.18 +0.8 1,380,841 + B158DRAFT_1339 0.20 -0.3 1,380,841 + B158DRAFT_1339 0.20 -1.2 1,380,841 + B158DRAFT_1339 0.20 +2.2 1,380,841 + B158DRAFT_1339 0.20 -1.8 1,380,849 - B158DRAFT_1339 0.21 -1.3 1,380,849 - B158DRAFT_1339 0.21 -1.0 1,380,905 - B158DRAFT_1339 0.25 -0.6 1,380,930 - B158DRAFT_1339 0.26 -1.3 1,380,978 + B158DRAFT_1339 0.30 -0.7 1,381,073 + B158DRAFT_1339 0.37 -0.2 1,381,135 + B158DRAFT_1339 0.41 -1.3 1,381,135 + B158DRAFT_1339 0.41 +0.1 1,381,135 + B158DRAFT_1339 0.41 +0.7 1,381,135 + B158DRAFT_1339 0.41 +0.7 1,381,135 + B158DRAFT_1339 0.41 +0.0 1,381,135 + B158DRAFT_1339 0.41 -1.4 1,381,135 + B158DRAFT_1339 0.41 -2.6 1,381,143 - B158DRAFT_1339 0.42 -1.0 1,381,143 - B158DRAFT_1339 0.42 -1.4 1,381,143 - B158DRAFT_1339 0.42 -0.9 1,381,143 - B158DRAFT_1339 0.42 -1.1 1,381,143 - B158DRAFT_1339 0.42 -1.5 1,381,143 - B158DRAFT_1339 0.42 +1.0 1,381,143 - B158DRAFT_1339 0.42 -1.4 1,381,143 - B158DRAFT_1339 0.42 -0.9 1,381,153 - B158DRAFT_1339 0.43 -0.6 1,381,222 + B158DRAFT_1339 0.48 +0.1 1,381,282 - B158DRAFT_1339 0.52 +0.7 1,381,402 - B158DRAFT_1339 0.61 -0.7 1,381,410 + B158DRAFT_1339 0.61 -0.3 1,381,741 - B158DRAFT_1339 0.86 +1.7 1,381,761 + B158DRAFT_1339 0.87 -1.5 1,381,762 - B158DRAFT_1339 0.87 +0.5 1,381,762 - B158DRAFT_1339 0.87 -1.2 1,381,774 + B158DRAFT_1339 0.88 +0.1 1,381,854 - +0.8 1,381,854 - -1.2 1,381,868 + -1.0 1,381,873 + +1.3 1,381,873 + +0.2 1,381,873 + -1.7 1,381,873 + -0.1 1,381,881 - -2.1 1,381,881 - +0.8 1,381,881 - -1.9 1,381,881 - -0.4 1,381,881 - -1.4 1,381,881 - -0.7 1,381,892 + -1.1 1,381,892 + -0.6 1,381,898 + -0.8 1,381,916 - -0.3 1,381,990 + -1.3 1,382,000 + -2.9 1,382,003 - -2.1 1,382,068 + +1.2 1,382,068 + -1.3 1,382,075 - -1.8 1,382,077 - -0.3 1,382,077 - -0.9 1,382,138 + B158DRAFT_1340 0.12 -0.6 1,382,166 + B158DRAFT_1340 0.17 -1.6 1,382,199 - B158DRAFT_1340 0.23 -0.0 1,382,204 - B158DRAFT_1340 0.24 -0.3 1,382,242 - B158DRAFT_1340 0.30 +0.8 1,382,267 + B158DRAFT_1340 0.35 -0.2 1,382,299 + B158DRAFT_1340 0.41 +0.2 1,382,300 + B158DRAFT_1340 0.41 -1.1 1,382,382 - B158DRAFT_1340 0.55 -0.2 1,382,395 + B158DRAFT_1340 0.58 -0.1 1,382,395 + B158DRAFT_1340 0.58 -1.3 1,382,400 + B158DRAFT_1340 0.59 -2.3 1,382,403 - B158DRAFT_1340 0.59 -2.3 1,382,405 + B158DRAFT_1340 0.59 -1.2 1,382,405 + B158DRAFT_1340 0.59 -0.9 1,382,405 + B158DRAFT_1340 0.59 -0.4 1,382,405 + B158DRAFT_1340 0.59 -0.4 1,382,408 - B158DRAFT_1340 0.60 -1.5 1,382,410 + B158DRAFT_1340 0.60 +0.3 1,382,413 - B158DRAFT_1340 0.61 +0.7 1,382,413 - B158DRAFT_1340 0.61 -0.7 1,382,418 - B158DRAFT_1340 0.62 -0.7 1,382,460 + B158DRAFT_1340 0.69 -0.8 1,382,460 + B158DRAFT_1340 0.69 -1.0 1,382,503 + B158DRAFT_1340 0.77 -0.6 1,382,503 + B158DRAFT_1340 0.77 +0.9 1,382,556 + B158DRAFT_1340 0.86 +1.0 1,382,558 + B158DRAFT_1340 0.87 -0.5 1,382,558 + B158DRAFT_1340 0.87 -0.9 1,382,598 + -0.1 1,382,604 + +1.6 1,382,609 + -3.2 1,382,612 - -0.8 1,382,614 + -0.6 1,382,644 + -0.2 1,382,645 + +2.4 1,382,653 - -0.9 1,382,701 - -0.3 1,382,707 + +0.0 1,382,715 - +1.1 1,382,715 - -0.2 1,382,758 + -0.2 1,382,803 + B158DRAFT_1341 0.12 -2.0 1,382,803 + B158DRAFT_1341 0.12 +0.1 1,382,803 + B158DRAFT_1341 0.12 +0.2 1,382,808 + B158DRAFT_1341 0.13 +1.1 1,382,816 - B158DRAFT_1341 0.13 +0.4 1,382,823 + B158DRAFT_1341 0.14 -1.2 1,382,834 - B158DRAFT_1341 0.15 -0.7 1,382,859 + B158DRAFT_1341 0.16 +0.4 1,382,867 - B158DRAFT_1341 0.17 +0.5 1,382,872 + B158DRAFT_1341 0.17 +0.6 1,382,872 + B158DRAFT_1341 0.17 -0.4 1,382,872 + B158DRAFT_1341 0.17 -1.2 1,382,880 - B158DRAFT_1341 0.18 +0.2 1,382,880 - B158DRAFT_1341 0.18 -1.1
Or see this region's nucleotide sequence