Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1198

Experiment: m.b. Fusidic 0.00049 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1196 and B158DRAFT_1197 are separated by 74 nucleotidesB158DRAFT_1197 and B158DRAFT_1198 overlap by 1 nucleotidesB158DRAFT_1198 and B158DRAFT_1199 are separated by 56 nucleotidesB158DRAFT_1199 and B158DRAFT_1200 are separated by 99 nucleotides B158DRAFT_1196: B158DRAFT_1196 - Uncharacterized protein conserved in bacteria, at 1,235,460 to 1,235,945 _1196 B158DRAFT_1197: B158DRAFT_1197 - ABC-type multidrug transport system, ATPase component, at 1,236,020 to 1,236,865 _1197 B158DRAFT_1198: B158DRAFT_1198 - ABC-type multidrug transport system, permease component, at 1,236,865 to 1,238,166 _1198 B158DRAFT_1199: B158DRAFT_1199 - Uncharacterized protein conserved in bacteria, at 1,238,223 to 1,238,450 _1199 B158DRAFT_1200: B158DRAFT_1200 - fumarase, class II (EC 4.2.1.2), at 1,238,550 to 1,239,911 _1200 Position (kb) 1236 1237 1238 1239Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1235.940 kb on + strandat 1235.940 kb on + strandat 1235.973 kb on - strandat 1236.028 kb on + strandat 1236.034 kb on + strandat 1236.046 kb on + strandat 1236.129 kb on - strand, within B158DRAFT_1197at 1236.167 kb on - strand, within B158DRAFT_1197at 1236.174 kb on + strand, within B158DRAFT_1197at 1236.174 kb on + strand, within B158DRAFT_1197at 1236.177 kb on - strand, within B158DRAFT_1197at 1236.177 kb on - strand, within B158DRAFT_1197at 1236.182 kb on - strand, within B158DRAFT_1197at 1236.184 kb on + strand, within B158DRAFT_1197at 1236.191 kb on + strand, within B158DRAFT_1197at 1236.191 kb on + strand, within B158DRAFT_1197at 1236.204 kb on + strand, within B158DRAFT_1197at 1236.284 kb on + strand, within B158DRAFT_1197at 1236.375 kb on + strand, within B158DRAFT_1197at 1236.375 kb on + strand, within B158DRAFT_1197at 1236.377 kb on + strand, within B158DRAFT_1197at 1236.623 kb on - strand, within B158DRAFT_1197at 1236.623 kb on - strand, within B158DRAFT_1197at 1236.623 kb on - strand, within B158DRAFT_1197at 1236.623 kb on - strand, within B158DRAFT_1197at 1236.689 kb on - strand, within B158DRAFT_1197at 1236.691 kb on + strand, within B158DRAFT_1197at 1236.698 kb on - strand, within B158DRAFT_1197at 1236.706 kb on - strand, within B158DRAFT_1197at 1236.708 kb on + strand, within B158DRAFT_1197at 1236.708 kb on + strand, within B158DRAFT_1197at 1236.708 kb on + strand, within B158DRAFT_1197at 1236.716 kb on - strand, within B158DRAFT_1197at 1237.035 kb on + strand, within B158DRAFT_1198at 1237.074 kb on - strand, within B158DRAFT_1198at 1237.141 kb on + strand, within B158DRAFT_1198at 1237.185 kb on + strand, within B158DRAFT_1198at 1237.240 kb on - strand, within B158DRAFT_1198at 1237.384 kb on - strand, within B158DRAFT_1198at 1237.395 kb on + strand, within B158DRAFT_1198at 1237.489 kb on - strand, within B158DRAFT_1198at 1237.489 kb on - strand, within B158DRAFT_1198at 1237.572 kb on + strand, within B158DRAFT_1198at 1237.638 kb on - strand, within B158DRAFT_1198at 1237.711 kb on + strand, within B158DRAFT_1198at 1237.732 kb on + strand, within B158DRAFT_1198at 1237.732 kb on + strand, within B158DRAFT_1198at 1237.740 kb on - strand, within B158DRAFT_1198at 1237.757 kb on + strand, within B158DRAFT_1198at 1237.776 kb on - strand, within B158DRAFT_1198at 1237.878 kb on - strand, within B158DRAFT_1198at 1238.017 kb on + strand, within B158DRAFT_1198at 1238.070 kb on - strandat 1238.262 kb on + strand, within B158DRAFT_1199at 1238.591 kb on + strandat 1238.791 kb on - strand, within B158DRAFT_1200at 1238.860 kb on + strand, within B158DRAFT_1200at 1238.940 kb on + strand, within B158DRAFT_1200at 1239.015 kb on - strand, within B158DRAFT_1200at 1239.082 kb on - strand, within B158DRAFT_1200at 1239.142 kb on + strand, within B158DRAFT_1200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.00049 mg/ml
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1,235,940 + -1.5
1,235,940 + -0.6
1,235,973 - -1.6
1,236,028 + +1.0
1,236,034 + -1.8
1,236,046 + -1.8
1,236,129 - B158DRAFT_1197 0.13 +0.1
1,236,167 - B158DRAFT_1197 0.17 -0.8
1,236,174 + B158DRAFT_1197 0.18 -0.1
1,236,174 + B158DRAFT_1197 0.18 -0.3
1,236,177 - B158DRAFT_1197 0.19 -2.0
1,236,177 - B158DRAFT_1197 0.19 +1.9
1,236,182 - B158DRAFT_1197 0.19 -0.8
1,236,184 + B158DRAFT_1197 0.19 -1.3
1,236,191 + B158DRAFT_1197 0.20 -0.6
1,236,191 + B158DRAFT_1197 0.20 -1.8
1,236,204 + B158DRAFT_1197 0.22 +0.1
1,236,284 + B158DRAFT_1197 0.31 -0.4
1,236,375 + B158DRAFT_1197 0.42 -1.7
1,236,375 + B158DRAFT_1197 0.42 -2.5
1,236,377 + B158DRAFT_1197 0.42 +0.2
1,236,623 - B158DRAFT_1197 0.71 +1.3
1,236,623 - B158DRAFT_1197 0.71 -0.9
1,236,623 - B158DRAFT_1197 0.71 -2.2
1,236,623 - B158DRAFT_1197 0.71 +0.6
1,236,689 - B158DRAFT_1197 0.79 +0.2
1,236,691 + B158DRAFT_1197 0.79 -0.6
1,236,698 - B158DRAFT_1197 0.80 -0.6
1,236,706 - B158DRAFT_1197 0.81 -0.8
1,236,708 + B158DRAFT_1197 0.81 -2.3
1,236,708 + B158DRAFT_1197 0.81 -2.1
1,236,708 + B158DRAFT_1197 0.81 +4.4
1,236,716 - B158DRAFT_1197 0.82 -1.5
1,237,035 + B158DRAFT_1198 0.13 -1.1
1,237,074 - B158DRAFT_1198 0.16 -1.0
1,237,141 + B158DRAFT_1198 0.21 -0.6
1,237,185 + B158DRAFT_1198 0.25 +0.2
1,237,240 - B158DRAFT_1198 0.29 +0.3
1,237,384 - B158DRAFT_1198 0.40 +3.1
1,237,395 + B158DRAFT_1198 0.41 -0.1
1,237,489 - B158DRAFT_1198 0.48 -1.1
1,237,489 - B158DRAFT_1198 0.48 -0.2
1,237,572 + B158DRAFT_1198 0.54 -1.8
1,237,638 - B158DRAFT_1198 0.59 -0.9
1,237,711 + B158DRAFT_1198 0.65 +0.3
1,237,732 + B158DRAFT_1198 0.67 -0.7
1,237,732 + B158DRAFT_1198 0.67 -1.5
1,237,740 - B158DRAFT_1198 0.67 -0.8
1,237,757 + B158DRAFT_1198 0.69 -0.8
1,237,776 - B158DRAFT_1198 0.70 -1.8
1,237,878 - B158DRAFT_1198 0.78 -0.5
1,238,017 + B158DRAFT_1198 0.88 +0.3
1,238,070 - +0.5
1,238,262 + B158DRAFT_1199 0.17 +0.7
1,238,591 + -1.6
1,238,791 - B158DRAFT_1200 0.18 +0.4
1,238,860 + B158DRAFT_1200 0.23 +1.1
1,238,940 + B158DRAFT_1200 0.29 -1.5
1,239,015 - B158DRAFT_1200 0.34 -0.5
1,239,082 - B158DRAFT_1200 0.39 +2.4
1,239,142 + B158DRAFT_1200 0.43 +0.0

Or see this region's nucleotide sequence