Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0689

Experiment: m.b. Fusidic 0.00049 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0688 and B158DRAFT_0689 overlap by 4 nucleotidesB158DRAFT_0689 and B158DRAFT_0690 overlap by 1 nucleotides B158DRAFT_0688: B158DRAFT_0688 - type II secretion system protein C (GspC), at 689,289 to 690,242 _0688 B158DRAFT_0689: B158DRAFT_0689 - general secretion pathway protein D, at 690,239 to 692,371 _0689 B158DRAFT_0690: B158DRAFT_0690 - general secretory pathway protein E, at 692,371 to 693,900 _0690 Position (kb) 690 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 689.259 kb on + strandat 689.441 kb on - strand, within B158DRAFT_0688at 689.501 kb on - strand, within B158DRAFT_0688at 689.619 kb on + strand, within B158DRAFT_0688at 689.725 kb on + strand, within B158DRAFT_0688at 689.725 kb on + strand, within B158DRAFT_0688at 689.725 kb on - strand, within B158DRAFT_0688at 689.834 kb on + strand, within B158DRAFT_0688at 689.834 kb on + strand, within B158DRAFT_0688at 689.842 kb on - strand, within B158DRAFT_0688at 689.842 kb on - strand, within B158DRAFT_0688at 689.842 kb on - strand, within B158DRAFT_0688at 689.866 kb on + strand, within B158DRAFT_0688at 689.877 kb on + strand, within B158DRAFT_0688at 689.877 kb on + strand, within B158DRAFT_0688at 690.052 kb on - strand, within B158DRAFT_0688at 690.094 kb on + strand, within B158DRAFT_0688at 690.114 kb on + strand, within B158DRAFT_0688at 690.119 kb on + strand, within B158DRAFT_0688at 690.124 kb on + strand, within B158DRAFT_0688at 690.124 kb on + strand, within B158DRAFT_0688at 690.154 kb on + strandat 690.166 kb on + strandat 690.319 kb on - strandat 690.348 kb on + strandat 690.348 kb on + strandat 690.348 kb on + strandat 690.428 kb on - strandat 690.441 kb on + strandat 690.441 kb on + strandat 690.441 kb on + strandat 690.524 kb on + strand, within B158DRAFT_0689at 690.526 kb on - strand, within B158DRAFT_0689at 690.650 kb on + strand, within B158DRAFT_0689at 690.728 kb on - strand, within B158DRAFT_0689at 690.756 kb on + strand, within B158DRAFT_0689at 690.777 kb on + strand, within B158DRAFT_0689at 690.873 kb on + strand, within B158DRAFT_0689at 690.987 kb on + strand, within B158DRAFT_0689at 690.987 kb on + strand, within B158DRAFT_0689at 690.987 kb on + strand, within B158DRAFT_0689at 690.987 kb on + strand, within B158DRAFT_0689at 690.995 kb on - strand, within B158DRAFT_0689at 691.024 kb on + strand, within B158DRAFT_0689at 691.024 kb on + strand, within B158DRAFT_0689at 691.032 kb on + strand, within B158DRAFT_0689at 691.032 kb on - strand, within B158DRAFT_0689at 691.032 kb on - strand, within B158DRAFT_0689at 691.110 kb on - strand, within B158DRAFT_0689at 691.407 kb on - strand, within B158DRAFT_0689at 691.407 kb on - strand, within B158DRAFT_0689at 691.419 kb on + strand, within B158DRAFT_0689at 691.427 kb on - strand, within B158DRAFT_0689at 691.472 kb on - strand, within B158DRAFT_0689at 691.587 kb on + strand, within B158DRAFT_0689at 691.604 kb on + strand, within B158DRAFT_0689at 691.612 kb on - strand, within B158DRAFT_0689at 691.621 kb on - strand, within B158DRAFT_0689at 691.623 kb on + strand, within B158DRAFT_0689at 691.628 kb on + strand, within B158DRAFT_0689at 691.652 kb on - strand, within B158DRAFT_0689at 691.659 kb on + strand, within B158DRAFT_0689at 691.659 kb on + strand, within B158DRAFT_0689at 691.659 kb on + strand, within B158DRAFT_0689at 691.659 kb on + strand, within B158DRAFT_0689at 691.667 kb on - strand, within B158DRAFT_0689at 691.667 kb on - strand, within B158DRAFT_0689at 691.667 kb on - strand, within B158DRAFT_0689at 691.727 kb on + strand, within B158DRAFT_0689at 691.794 kb on + strand, within B158DRAFT_0689at 691.802 kb on - strand, within B158DRAFT_0689at 691.802 kb on - strand, within B158DRAFT_0689at 692.154 kb on + strand, within B158DRAFT_0689at 692.285 kb on - strandat 692.303 kb on + strandat 692.311 kb on - strandat 692.332 kb on + strandat 692.356 kb on + strandat 692.634 kb on + strand, within B158DRAFT_0690at 692.634 kb on + strand, within B158DRAFT_0690at 692.642 kb on + strand, within B158DRAFT_0690at 692.642 kb on - strand, within B158DRAFT_0690at 692.686 kb on + strand, within B158DRAFT_0690at 692.771 kb on + strand, within B158DRAFT_0690at 693.161 kb on + strand, within B158DRAFT_0690at 693.298 kb on - strand, within B158DRAFT_0690at 693.308 kb on - strand, within B158DRAFT_0690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.00049 mg/ml
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689,259 + +0.2
689,441 - B158DRAFT_0688 0.16 +2.3
689,501 - B158DRAFT_0688 0.22 +3.6
689,619 + B158DRAFT_0688 0.35 +1.8
689,725 + B158DRAFT_0688 0.46 +3.6
689,725 + B158DRAFT_0688 0.46 +3.1
689,725 - B158DRAFT_0688 0.46 +3.1
689,834 + B158DRAFT_0688 0.57 +0.6
689,834 + B158DRAFT_0688 0.57 +1.1
689,842 - B158DRAFT_0688 0.58 +1.8
689,842 - B158DRAFT_0688 0.58 +0.8
689,842 - B158DRAFT_0688 0.58 +3.6
689,866 + B158DRAFT_0688 0.60 -0.6
689,877 + B158DRAFT_0688 0.62 +1.5
689,877 + B158DRAFT_0688 0.62 +0.5
690,052 - B158DRAFT_0688 0.80 +1.5
690,094 + B158DRAFT_0688 0.84 +2.3
690,114 + B158DRAFT_0688 0.86 -0.5
690,119 + B158DRAFT_0688 0.87 +2.3
690,124 + B158DRAFT_0688 0.88 +0.9
690,124 + B158DRAFT_0688 0.88 -2.1
690,154 + -0.7
690,166 + +2.6
690,319 - +1.6
690,348 + +2.3
690,348 + +1.8
690,348 + +2.1
690,428 - +3.6
690,441 + +1.6
690,441 + +4.6
690,441 + +2.1
690,524 + B158DRAFT_0689 0.13 +2.6
690,526 - B158DRAFT_0689 0.13 +0.5
690,650 + B158DRAFT_0689 0.19 +3.1
690,728 - B158DRAFT_0689 0.23 +4.6
690,756 + B158DRAFT_0689 0.24 +2.3
690,777 + B158DRAFT_0689 0.25 +5.1
690,873 + B158DRAFT_0689 0.30 -0.2
690,987 + B158DRAFT_0689 0.35 +2.1
690,987 + B158DRAFT_0689 0.35 +2.1
690,987 + B158DRAFT_0689 0.35 +2.3
690,987 + B158DRAFT_0689 0.35 +2.3
690,995 - B158DRAFT_0689 0.35 -0.2
691,024 + B158DRAFT_0689 0.37 +2.1
691,024 + B158DRAFT_0689 0.37 +2.1
691,032 + B158DRAFT_0689 0.37 +2.1
691,032 - B158DRAFT_0689 0.37 +2.1
691,032 - B158DRAFT_0689 0.37 +1.3
691,110 - B158DRAFT_0689 0.41 +3.8
691,407 - B158DRAFT_0689 0.55 +2.6
691,407 - B158DRAFT_0689 0.55 +2.6
691,419 + B158DRAFT_0689 0.55 +0.5
691,427 - B158DRAFT_0689 0.56 +0.8
691,472 - B158DRAFT_0689 0.58 +1.1
691,587 + B158DRAFT_0689 0.63 +3.6
691,604 + B158DRAFT_0689 0.64 +4.6
691,612 - B158DRAFT_0689 0.64 +2.6
691,621 - B158DRAFT_0689 0.65 +3.6
691,623 + B158DRAFT_0689 0.65 +3.1
691,628 + B158DRAFT_0689 0.65 +2.3
691,652 - B158DRAFT_0689 0.66 +3.6
691,659 + B158DRAFT_0689 0.67 +0.8
691,659 + B158DRAFT_0689 0.67 +1.3
691,659 + B158DRAFT_0689 0.67 +3.6
691,659 + B158DRAFT_0689 0.67 +1.6
691,667 - B158DRAFT_0689 0.67 -0.4
691,667 - B158DRAFT_0689 0.67 +2.3
691,667 - B158DRAFT_0689 0.67 +1.1
691,727 + B158DRAFT_0689 0.70 +2.3
691,794 + B158DRAFT_0689 0.73 +2.1
691,802 - B158DRAFT_0689 0.73 +3.6
691,802 - B158DRAFT_0689 0.73 +2.1
692,154 + B158DRAFT_0689 0.90 +2.6
692,285 - +1.1
692,303 + +1.8
692,311 - +2.6
692,332 + +1.6
692,356 + -3.0
692,634 + B158DRAFT_0690 0.17 +2.3
692,634 + B158DRAFT_0690 0.17 +2.6
692,642 + B158DRAFT_0690 0.18 +2.6
692,642 - B158DRAFT_0690 0.18 +3.1
692,686 + B158DRAFT_0690 0.21 +1.5
692,771 + B158DRAFT_0690 0.26 +3.6
693,161 + B158DRAFT_0690 0.52 +3.1
693,298 - B158DRAFT_0690 0.61 +1.6
693,308 - B158DRAFT_0690 0.61 +3.1

Or see this region's nucleotide sequence