Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0398

Experiment: m.b. Fusidic 0.00049 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0397 and B158DRAFT_0398 are separated by 11 nucleotidesB158DRAFT_0398 and B158DRAFT_0399 are separated by 294 nucleotides B158DRAFT_0397: B158DRAFT_0397 - methionyl-tRNA formyltransferase (EC 2.1.2.9), at 403,178 to 404,137 _0397 B158DRAFT_0398: B158DRAFT_0398 - peptide deformylase, at 404,149 to 404,649 _0398 B158DRAFT_0399: B158DRAFT_0399 - LysM domain., at 404,944 to 405,981 _0399 Position (kb) 404 405Strain fitness (log2 ratio) -2 -1 0 1 2 3at 403.150 kb on - strandat 403.160 kb on - strandat 404.205 kb on - strand, within B158DRAFT_0398at 404.727 kb on - strandat 404.779 kb on - strandat 404.831 kb on + strandat 404.844 kb on - strandat 404.861 kb on + strandat 404.911 kb on - strandat 405.008 kb on + strandat 405.008 kb on + strandat 405.036 kb on - strandat 405.038 kb on + strandat 405.044 kb on - strandat 405.054 kb on + strand, within B158DRAFT_0399at 405.054 kb on - strand, within B158DRAFT_0399at 405.198 kb on + strand, within B158DRAFT_0399at 405.206 kb on - strand, within B158DRAFT_0399at 405.227 kb on + strand, within B158DRAFT_0399at 405.235 kb on - strand, within B158DRAFT_0399at 405.278 kb on + strand, within B158DRAFT_0399at 405.414 kb on + strand, within B158DRAFT_0399at 405.414 kb on + strand, within B158DRAFT_0399at 405.469 kb on + strand, within B158DRAFT_0399at 405.645 kb on + strand, within B158DRAFT_0399

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.00049 mg/ml
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403,150 - -2.5
403,160 - +1.6
404,205 - B158DRAFT_0398 0.11 -1.4
404,727 - -0.4
404,779 - -1.3
404,831 + -0.5
404,844 - +1.5
404,861 + -0.0
404,911 - -0.0
405,008 + +0.6
405,008 + -0.5
405,036 - +3.4
405,038 + -1.6
405,044 - -1.1
405,054 + B158DRAFT_0399 0.11 +0.3
405,054 - B158DRAFT_0399 0.11 -1.3
405,198 + B158DRAFT_0399 0.24 +1.2
405,206 - B158DRAFT_0399 0.25 -1.9
405,227 + B158DRAFT_0399 0.27 -1.5
405,235 - B158DRAFT_0399 0.28 -1.1
405,278 + B158DRAFT_0399 0.32 -2.1
405,414 + B158DRAFT_0399 0.45 -1.0
405,414 + B158DRAFT_0399 0.45 -0.8
405,469 + B158DRAFT_0399 0.51 -1.7
405,645 + B158DRAFT_0399 0.68 -0.5

Or see this region's nucleotide sequence