Experiment: m.b. Polymyxin B sulfate 0.0019531 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1616 and B158DRAFT_1617 are separated by 16 nucleotides B158DRAFT_1617 and B158DRAFT_1618 are separated by 256 nucleotides B158DRAFT_1618 and B158DRAFT_1619 are separated by 44 nucleotides
B158DRAFT_1616: B158DRAFT_1616 - copper-(or silver)-translocating P-type ATPase, at 1,675,449 to 1,677,701
_1616
B158DRAFT_1617: B158DRAFT_1617 - hypothetical protein, at 1,677,718 to 1,678,080
_1617
B158DRAFT_1618: B158DRAFT_1618 - sodium/proton antiporter, NhaD family (TC 2.A.62), at 1,678,337 to 1,679,740
_1618
B158DRAFT_1619: B158DRAFT_1619 - choline/carnitine/betaine transport, at 1,679,785 to 1,681,398
_1619
Position (kb)
1678
1679
1680 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 1677.339 kb on + strand, within B158DRAFT_1616 at 1677.340 kb on - strand, within B158DRAFT_1616 at 1677.383 kb on + strand, within B158DRAFT_1616 at 1677.446 kb on - strand, within B158DRAFT_1616 at 1677.446 kb on - strand, within B158DRAFT_1616 at 1677.457 kb on + strand, within B158DRAFT_1616 at 1677.457 kb on + strand, within B158DRAFT_1616 at 1677.465 kb on - strand, within B158DRAFT_1616 at 1677.470 kb on - strand, within B158DRAFT_1616 at 1677.477 kb on - strand at 1677.490 kb on + strand at 1677.517 kb on + strand at 1677.519 kb on - strand at 1677.573 kb on + strand at 1677.581 kb on - strand at 1677.581 kb on - strand at 1677.581 kb on - strand at 1677.581 kb on - strand at 1677.602 kb on + strand at 1677.605 kb on - strand at 1677.648 kb on - strand at 1677.651 kb on + strand at 1677.651 kb on + strand at 1677.651 kb on + strand at 1677.656 kb on + strand at 1677.659 kb on - strand at 1677.695 kb on + strand at 1677.703 kb on - strand at 1677.746 kb on + strand at 1677.746 kb on + strand at 1677.754 kb on - strand at 1677.754 kb on - strand at 1677.754 kb on - strand at 1677.754 kb on - strand at 1677.802 kb on - strand, within B158DRAFT_1617 at 1677.814 kb on + strand, within B158DRAFT_1617 at 1677.814 kb on + strand, within B158DRAFT_1617 at 1677.856 kb on - strand, within B158DRAFT_1617 at 1677.870 kb on - strand, within B158DRAFT_1617 at 1677.870 kb on - strand, within B158DRAFT_1617 at 1678.053 kb on + strand at 1678.053 kb on + strand at 1678.114 kb on + strand at 1678.120 kb on + strand at 1678.127 kb on + strand at 1678.128 kb on - strand at 1678.128 kb on - strand at 1678.154 kb on + strand at 1678.201 kb on + strand at 1678.209 kb on - strand at 1678.221 kb on - strand at 1678.277 kb on + strand at 1678.285 kb on - strand at 1678.293 kb on + strand at 1678.322 kb on + strand at 1678.480 kb on - strand, within B158DRAFT_1618 at 1678.516 kb on + strand, within B158DRAFT_1618 at 1678.547 kb on + strand, within B158DRAFT_1618 at 1678.547 kb on + strand, within B158DRAFT_1618 at 1678.555 kb on - strand, within B158DRAFT_1618 at 1678.555 kb on - strand, within B158DRAFT_1618 at 1678.555 kb on - strand, within B158DRAFT_1618 at 1678.674 kb on + strand, within B158DRAFT_1618 at 1678.713 kb on - strand, within B158DRAFT_1618 at 1678.739 kb on + strand, within B158DRAFT_1618 at 1678.754 kb on + strand, within B158DRAFT_1618 at 1678.767 kb on - strand, within B158DRAFT_1618 at 1678.767 kb on - strand, within B158DRAFT_1618 at 1678.770 kb on + strand, within B158DRAFT_1618 at 1678.808 kb on + strand, within B158DRAFT_1618 at 1678.808 kb on + strand, within B158DRAFT_1618 at 1678.808 kb on + strand, within B158DRAFT_1618 at 1678.816 kb on - strand, within B158DRAFT_1618 at 1678.816 kb on - strand, within B158DRAFT_1618 at 1678.816 kb on - strand, within B158DRAFT_1618 at 1678.816 kb on - strand, within B158DRAFT_1618 at 1678.818 kb on - strand, within B158DRAFT_1618 at 1678.818 kb on - strand, within B158DRAFT_1618 at 1678.820 kb on + strand, within B158DRAFT_1618 at 1678.877 kb on + strand, within B158DRAFT_1618 at 1678.885 kb on - strand, within B158DRAFT_1618 at 1678.885 kb on - strand, within B158DRAFT_1618 at 1678.895 kb on - strand, within B158DRAFT_1618 at 1679.002 kb on + strand, within B158DRAFT_1618 at 1679.071 kb on + strand, within B158DRAFT_1618 at 1679.079 kb on + strand, within B158DRAFT_1618 at 1679.087 kb on - strand, within B158DRAFT_1618 at 1679.089 kb on + strand, within B158DRAFT_1618 at 1679.089 kb on + strand, within B158DRAFT_1618 at 1679.089 kb on + strand, within B158DRAFT_1618 at 1679.097 kb on - strand, within B158DRAFT_1618 at 1679.097 kb on - strand, within B158DRAFT_1618 at 1679.111 kb on - strand, within B158DRAFT_1618 at 1679.214 kb on + strand, within B158DRAFT_1618 at 1679.283 kb on + strand, within B158DRAFT_1618 at 1679.307 kb on - strand, within B158DRAFT_1618 at 1679.325 kb on + strand, within B158DRAFT_1618 at 1679.325 kb on + strand, within B158DRAFT_1618 at 1679.333 kb on - strand, within B158DRAFT_1618 at 1679.335 kb on + strand, within B158DRAFT_1618 at 1679.343 kb on - strand, within B158DRAFT_1618 at 1679.367 kb on + strand, within B158DRAFT_1618 at 1679.367 kb on + strand, within B158DRAFT_1618 at 1679.367 kb on + strand, within B158DRAFT_1618 at 1679.367 kb on + strand, within B158DRAFT_1618 at 1679.375 kb on - strand, within B158DRAFT_1618 at 1679.375 kb on - strand, within B158DRAFT_1618 at 1679.375 kb on - strand, within B158DRAFT_1618 at 1679.375 kb on - strand, within B158DRAFT_1618 at 1679.375 kb on - strand, within B158DRAFT_1618 at 1679.423 kb on + strand, within B158DRAFT_1618 at 1679.487 kb on - strand, within B158DRAFT_1618 at 1679.511 kb on + strand, within B158DRAFT_1618 at 1679.516 kb on + strand, within B158DRAFT_1618 at 1679.524 kb on - strand, within B158DRAFT_1618 at 1679.576 kb on + strand, within B158DRAFT_1618 at 1679.576 kb on + strand, within B158DRAFT_1618 at 1679.630 kb on + strand at 1679.695 kb on - strand at 1679.695 kb on - strand at 1679.695 kb on - strand at 1679.827 kb on - strand at 1679.856 kb on - strand at 1679.872 kb on + strand at 1679.880 kb on - strand at 1679.935 kb on + strand at 1679.943 kb on - strand at 1679.977 kb on - strand, within B158DRAFT_1619 at 1679.996 kb on + strand, within B158DRAFT_1619 at 1680.004 kb on - strand, within B158DRAFT_1619 at 1680.015 kb on + strand, within B158DRAFT_1619 at 1680.015 kb on + strand, within B158DRAFT_1619 at 1680.023 kb on - strand, within B158DRAFT_1619 at 1680.099 kb on + strand, within B158DRAFT_1619 at 1680.169 kb on - strand, within B158DRAFT_1619 at 1680.192 kb on - strand, within B158DRAFT_1619 at 1680.195 kb on + strand, within B158DRAFT_1619 at 1680.195 kb on + strand, within B158DRAFT_1619 at 1680.203 kb on - strand, within B158DRAFT_1619 at 1680.231 kb on - strand, within B158DRAFT_1619 at 1680.238 kb on + strand, within B158DRAFT_1619 at 1680.241 kb on - strand, within B158DRAFT_1619 at 1680.253 kb on + strand, within B158DRAFT_1619 at 1680.253 kb on + strand, within B158DRAFT_1619 at 1680.253 kb on + strand, within B158DRAFT_1619 at 1680.261 kb on - strand, within B158DRAFT_1619 at 1680.261 kb on - strand, within B158DRAFT_1619 at 1680.261 kb on - strand, within B158DRAFT_1619 at 1680.282 kb on + strand, within B158DRAFT_1619 at 1680.290 kb on - strand, within B158DRAFT_1619 at 1680.298 kb on - strand, within B158DRAFT_1619 at 1680.329 kb on - strand, within B158DRAFT_1619 at 1680.357 kb on + strand, within B158DRAFT_1619 at 1680.371 kb on + strand, within B158DRAFT_1619 at 1680.379 kb on - strand, within B158DRAFT_1619 at 1680.380 kb on + strand, within B158DRAFT_1619 at 1680.387 kb on - strand, within B158DRAFT_1619 at 1680.387 kb on - strand, within B158DRAFT_1619 at 1680.388 kb on - strand, within B158DRAFT_1619 at 1680.389 kb on + strand, within B158DRAFT_1619 at 1680.512 kb on + strand, within B158DRAFT_1619 at 1680.527 kb on + strand, within B158DRAFT_1619 at 1680.540 kb on + strand, within B158DRAFT_1619 at 1680.548 kb on - strand, within B158DRAFT_1619 at 1680.548 kb on - strand, within B158DRAFT_1619 at 1680.548 kb on - strand, within B158DRAFT_1619 at 1680.552 kb on + strand, within B158DRAFT_1619 at 1680.560 kb on - strand, within B158DRAFT_1619 at 1680.560 kb on - strand, within B158DRAFT_1619 at 1680.588 kb on + strand, within B158DRAFT_1619 at 1680.594 kb on + strand, within B158DRAFT_1619 at 1680.609 kb on - strand, within B158DRAFT_1619 at 1680.668 kb on + strand, within B158DRAFT_1619
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0019531 mg/ml remove 1,677,339 + B158DRAFT_1616 0.84 +0.2 1,677,340 - B158DRAFT_1616 0.84 -0.9 1,677,383 + B158DRAFT_1616 0.86 -0.0 1,677,446 - B158DRAFT_1616 0.89 -0.8 1,677,446 - B158DRAFT_1616 0.89 -2.3 1,677,457 + B158DRAFT_1616 0.89 -2.1 1,677,457 + B158DRAFT_1616 0.89 +0.3 1,677,465 - B158DRAFT_1616 0.89 -0.0 1,677,470 - B158DRAFT_1616 0.90 -1.7 1,677,477 - +0.2 1,677,490 + -0.0 1,677,517 + -0.3 1,677,519 - -0.0 1,677,573 + -3.8 1,677,581 - +0.8 1,677,581 - +1.7 1,677,581 - -0.6 1,677,581 - +0.6 1,677,602 + -0.5 1,677,605 - -5.0 1,677,648 - -1.3 1,677,651 + +1.3 1,677,651 + +0.3 1,677,651 + -2.2 1,677,656 + -1.3 1,677,659 - -0.9 1,677,695 + -1.6 1,677,703 - +0.6 1,677,746 + +0.6 1,677,746 + -4.8 1,677,754 - +1.9 1,677,754 - +0.5 1,677,754 - -3.4 1,677,754 - -0.1 1,677,802 - B158DRAFT_1617 0.23 -0.1 1,677,814 + B158DRAFT_1617 0.26 -2.8 1,677,814 + B158DRAFT_1617 0.26 -1.3 1,677,856 - B158DRAFT_1617 0.38 -3.8 1,677,870 - B158DRAFT_1617 0.42 -0.0 1,677,870 - B158DRAFT_1617 0.42 -0.4 1,678,053 + +0.1 1,678,053 + -4.0 1,678,114 + +0.6 1,678,120 + -1.4 1,678,127 + -2.3 1,678,128 - -1.0 1,678,128 - -1.4 1,678,154 + -2.3 1,678,201 + -0.5 1,678,209 - -0.8 1,678,221 - +0.3 1,678,277 + -2.2 1,678,285 - -1.0 1,678,293 + -0.3 1,678,322 + +0.6 1,678,480 - B158DRAFT_1618 0.10 -0.8 1,678,516 + B158DRAFT_1618 0.13 +1.2 1,678,547 + B158DRAFT_1618 0.15 +0.7 1,678,547 + B158DRAFT_1618 0.15 -0.4 1,678,555 - B158DRAFT_1618 0.16 -0.3 1,678,555 - B158DRAFT_1618 0.16 +0.5 1,678,555 - B158DRAFT_1618 0.16 -1.1 1,678,674 + B158DRAFT_1618 0.24 -1.7 1,678,713 - B158DRAFT_1618 0.27 -0.9 1,678,739 + B158DRAFT_1618 0.29 -0.9 1,678,754 + B158DRAFT_1618 0.30 +0.6 1,678,767 - B158DRAFT_1618 0.31 -1.6 1,678,767 - B158DRAFT_1618 0.31 +0.5 1,678,770 + B158DRAFT_1618 0.31 -0.4 1,678,808 + B158DRAFT_1618 0.34 +1.7 1,678,808 + B158DRAFT_1618 0.34 -3.1 1,678,808 + B158DRAFT_1618 0.34 -0.2 1,678,816 - B158DRAFT_1618 0.34 -4.5 1,678,816 - B158DRAFT_1618 0.34 +1.1 1,678,816 - B158DRAFT_1618 0.34 -0.8 1,678,816 - B158DRAFT_1618 0.34 -1.9 1,678,818 - B158DRAFT_1618 0.34 -0.4 1,678,818 - B158DRAFT_1618 0.34 +1.1 1,678,820 + B158DRAFT_1618 0.34 -1.9 1,678,877 + B158DRAFT_1618 0.38 -0.5 1,678,885 - B158DRAFT_1618 0.39 -0.2 1,678,885 - B158DRAFT_1618 0.39 -1.5 1,678,895 - B158DRAFT_1618 0.40 -1.0 1,679,002 + B158DRAFT_1618 0.47 +1.4 1,679,071 + B158DRAFT_1618 0.52 +0.3 1,679,079 + B158DRAFT_1618 0.53 -0.9 1,679,087 - B158DRAFT_1618 0.53 +0.3 1,679,089 + B158DRAFT_1618 0.54 -4.6 1,679,089 + B158DRAFT_1618 0.54 +0.2 1,679,089 + B158DRAFT_1618 0.54 -0.8 1,679,097 - B158DRAFT_1618 0.54 +0.2 1,679,097 - B158DRAFT_1618 0.54 -0.7 1,679,111 - B158DRAFT_1618 0.55 -0.9 1,679,214 + B158DRAFT_1618 0.62 +0.6 1,679,283 + B158DRAFT_1618 0.67 +0.1 1,679,307 - B158DRAFT_1618 0.69 -0.2 1,679,325 + B158DRAFT_1618 0.70 -4.3 1,679,325 + B158DRAFT_1618 0.70 -0.8 1,679,333 - B158DRAFT_1618 0.71 +0.1 1,679,335 + B158DRAFT_1618 0.71 +0.2 1,679,343 - B158DRAFT_1618 0.72 -1.2 1,679,367 + B158DRAFT_1618 0.73 -3.5 1,679,367 + B158DRAFT_1618 0.73 -2.4 1,679,367 + B158DRAFT_1618 0.73 +0.0 1,679,367 + B158DRAFT_1618 0.73 -1.1 1,679,375 - B158DRAFT_1618 0.74 +1.0 1,679,375 - B158DRAFT_1618 0.74 +0.8 1,679,375 - B158DRAFT_1618 0.74 -1.4 1,679,375 - B158DRAFT_1618 0.74 -0.6 1,679,375 - B158DRAFT_1618 0.74 +0.3 1,679,423 + B158DRAFT_1618 0.77 -0.5 1,679,487 - B158DRAFT_1618 0.82 -0.9 1,679,511 + B158DRAFT_1618 0.84 +0.7 1,679,516 + B158DRAFT_1618 0.84 +0.0 1,679,524 - B158DRAFT_1618 0.85 +0.4 1,679,576 + B158DRAFT_1618 0.88 +0.6 1,679,576 + B158DRAFT_1618 0.88 -0.1 1,679,630 + +0.1 1,679,695 - -0.7 1,679,695 - +1.1 1,679,695 - +1.2 1,679,827 - -1.7 1,679,856 - -0.1 1,679,872 + +1.0 1,679,880 - -5.0 1,679,935 + -3.2 1,679,943 - -0.8 1,679,977 - B158DRAFT_1619 0.12 +0.2 1,679,996 + B158DRAFT_1619 0.13 -0.1 1,680,004 - B158DRAFT_1619 0.14 -0.6 1,680,015 + B158DRAFT_1619 0.14 +0.1 1,680,015 + B158DRAFT_1619 0.14 +0.8 1,680,023 - B158DRAFT_1619 0.15 -0.8 1,680,099 + B158DRAFT_1619 0.19 -0.5 1,680,169 - B158DRAFT_1619 0.24 -4.5 1,680,192 - B158DRAFT_1619 0.25 -0.1 1,680,195 + B158DRAFT_1619 0.25 +0.3 1,680,195 + B158DRAFT_1619 0.25 +0.3 1,680,203 - B158DRAFT_1619 0.26 +0.4 1,680,231 - B158DRAFT_1619 0.28 -3.6 1,680,238 + B158DRAFT_1619 0.28 -2.0 1,680,241 - B158DRAFT_1619 0.28 -1.0 1,680,253 + B158DRAFT_1619 0.29 -0.7 1,680,253 + B158DRAFT_1619 0.29 +0.9 1,680,253 + B158DRAFT_1619 0.29 +2.0 1,680,261 - B158DRAFT_1619 0.29 -1.2 1,680,261 - B158DRAFT_1619 0.29 -1.0 1,680,261 - B158DRAFT_1619 0.29 +0.3 1,680,282 + B158DRAFT_1619 0.31 -0.3 1,680,290 - B158DRAFT_1619 0.31 -6.2 1,680,298 - B158DRAFT_1619 0.32 -0.6 1,680,329 - B158DRAFT_1619 0.34 -1.1 1,680,357 + B158DRAFT_1619 0.35 +0.6 1,680,371 + B158DRAFT_1619 0.36 -0.3 1,680,379 - B158DRAFT_1619 0.37 -0.5 1,680,380 + B158DRAFT_1619 0.37 +0.9 1,680,387 - B158DRAFT_1619 0.37 -0.0 1,680,387 - B158DRAFT_1619 0.37 -0.3 1,680,388 - B158DRAFT_1619 0.37 -4.5 1,680,389 + B158DRAFT_1619 0.37 -3.5 1,680,512 + B158DRAFT_1619 0.45 -4.3 1,680,527 + B158DRAFT_1619 0.46 -3.9 1,680,540 + B158DRAFT_1619 0.47 +2.5 1,680,548 - B158DRAFT_1619 0.47 +0.5 1,680,548 - B158DRAFT_1619 0.47 -0.6 1,680,548 - B158DRAFT_1619 0.47 +0.8 1,680,552 + B158DRAFT_1619 0.48 +0.2 1,680,560 - B158DRAFT_1619 0.48 -0.6 1,680,560 - B158DRAFT_1619 0.48 +0.5 1,680,588 + B158DRAFT_1619 0.50 -1.2 1,680,594 + B158DRAFT_1619 0.50 +0.2 1,680,609 - B158DRAFT_1619 0.51 +0.1 1,680,668 + B158DRAFT_1619 0.55 -1.0
Or see this region's nucleotide sequence