Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0771

Experiment: m.b. Polymyxin B sulfate 0.0019531 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0770 and B158DRAFT_0771 are separated by 44 nucleotidesB158DRAFT_0771 and B158DRAFT_0772 are separated by 105 nucleotidesB158DRAFT_0772 and B158DRAFT_0773 are separated by 59 nucleotides B158DRAFT_0770: B158DRAFT_0770 - Choline dehydrogenase and related flavoproteins, at 777,281 to 778,831 _0770 B158DRAFT_0771: B158DRAFT_0771 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 778,876 to 779,358 _0771 B158DRAFT_0772: B158DRAFT_0772 - Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I), at 779,464 to 779,724 _0772 B158DRAFT_0773: B158DRAFT_0773 - Predicted esterase of the alpha-beta hydrolase superfamily, at 779,784 to 780,548 _0773 Position (kb) 778 779 780Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 777.889 kb on - strand, within B158DRAFT_0770at 777.891 kb on - strand, within B158DRAFT_0770at 777.932 kb on + strand, within B158DRAFT_0770at 777.940 kb on - strand, within B158DRAFT_0770at 777.957 kb on + strand, within B158DRAFT_0770at 778.016 kb on + strand, within B158DRAFT_0770at 778.025 kb on + strand, within B158DRAFT_0770at 778.064 kb on + strand, within B158DRAFT_0770at 778.077 kb on + strand, within B158DRAFT_0770at 778.080 kb on - strand, within B158DRAFT_0770at 778.085 kb on - strand, within B158DRAFT_0770at 778.185 kb on - strand, within B158DRAFT_0770at 778.185 kb on - strand, within B158DRAFT_0770at 778.203 kb on - strand, within B158DRAFT_0770at 778.254 kb on - strand, within B158DRAFT_0770at 778.278 kb on + strand, within B158DRAFT_0770at 778.284 kb on - strand, within B158DRAFT_0770at 778.286 kb on + strand, within B158DRAFT_0770at 778.286 kb on + strand, within B158DRAFT_0770at 778.286 kb on - strand, within B158DRAFT_0770at 778.294 kb on - strand, within B158DRAFT_0770at 778.296 kb on + strand, within B158DRAFT_0770at 778.304 kb on - strand, within B158DRAFT_0770at 778.304 kb on - strand, within B158DRAFT_0770at 778.363 kb on - strand, within B158DRAFT_0770at 778.392 kb on + strand, within B158DRAFT_0770at 778.402 kb on - strand, within B158DRAFT_0770at 778.420 kb on - strand, within B158DRAFT_0770at 778.480 kb on + strand, within B158DRAFT_0770at 778.520 kb on - strand, within B158DRAFT_0770at 778.570 kb on + strand, within B158DRAFT_0770at 778.655 kb on - strand, within B158DRAFT_0770at 778.722 kb on - strandat 778.811 kb on + strandat 779.362 kb on - strandat 779.387 kb on + strandat 779.395 kb on - strandat 779.395 kb on - strandat 779.720 kb on + strandat 779.720 kb on + strandat 779.720 kb on + strandat 779.728 kb on - strandat 779.728 kb on - strandat 779.728 kb on - strandat 779.728 kb on - strandat 779.730 kb on + strandat 779.741 kb on + strandat 779.741 kb on + strandat 779.742 kb on + strandat 779.749 kb on - strandat 779.749 kb on - strandat 779.786 kb on + strandat 779.786 kb on + strandat 779.798 kb on + strandat 779.807 kb on + strandat 779.823 kb on + strandat 779.835 kb on + strandat 779.843 kb on - strandat 779.878 kb on - strand, within B158DRAFT_0773at 779.925 kb on + strand, within B158DRAFT_0773at 779.933 kb on - strand, within B158DRAFT_0773at 779.959 kb on + strand, within B158DRAFT_0773at 779.974 kb on + strand, within B158DRAFT_0773at 780.029 kb on + strand, within B158DRAFT_0773at 780.037 kb on - strand, within B158DRAFT_0773at 780.039 kb on + strand, within B158DRAFT_0773at 780.039 kb on + strand, within B158DRAFT_0773at 780.044 kb on + strand, within B158DRAFT_0773at 780.123 kb on + strand, within B158DRAFT_0773at 780.128 kb on + strand, within B158DRAFT_0773at 780.128 kb on + strand, within B158DRAFT_0773at 780.131 kb on - strand, within B158DRAFT_0773at 780.136 kb on - strand, within B158DRAFT_0773at 780.136 kb on - strand, within B158DRAFT_0773at 780.171 kb on - strand, within B158DRAFT_0773at 780.171 kb on - strand, within B158DRAFT_0773at 780.188 kb on + strand, within B158DRAFT_0773at 780.188 kb on + strand, within B158DRAFT_0773at 780.233 kb on + strand, within B158DRAFT_0773at 780.233 kb on + strand, within B158DRAFT_0773at 780.278 kb on + strand, within B158DRAFT_0773at 780.281 kb on - strand, within B158DRAFT_0773at 780.303 kb on - strand, within B158DRAFT_0773at 780.346 kb on + strand, within B158DRAFT_0773

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0019531 mg/ml
remove
777,889 - B158DRAFT_0770 0.39 +1.3
777,891 - B158DRAFT_0770 0.39 -0.3
777,932 + B158DRAFT_0770 0.42 +0.7
777,940 - B158DRAFT_0770 0.42 -0.3
777,957 + B158DRAFT_0770 0.44 -0.4
778,016 + B158DRAFT_0770 0.47 +1.2
778,025 + B158DRAFT_0770 0.48 -3.5
778,064 + B158DRAFT_0770 0.50 -0.6
778,077 + B158DRAFT_0770 0.51 -0.6
778,080 - B158DRAFT_0770 0.52 -2.7
778,085 - B158DRAFT_0770 0.52 +0.1
778,185 - B158DRAFT_0770 0.58 +1.3
778,185 - B158DRAFT_0770 0.58 +1.6
778,203 - B158DRAFT_0770 0.59 -1.3
778,254 - B158DRAFT_0770 0.63 -0.7
778,278 + B158DRAFT_0770 0.64 +0.8
778,284 - B158DRAFT_0770 0.65 +0.4
778,286 + B158DRAFT_0770 0.65 +0.1
778,286 + B158DRAFT_0770 0.65 -1.1
778,286 - B158DRAFT_0770 0.65 -0.1
778,294 - B158DRAFT_0770 0.65 -0.5
778,296 + B158DRAFT_0770 0.65 +0.4
778,304 - B158DRAFT_0770 0.66 -4.9
778,304 - B158DRAFT_0770 0.66 +0.7
778,363 - B158DRAFT_0770 0.70 -0.1
778,392 + B158DRAFT_0770 0.72 -2.0
778,402 - B158DRAFT_0770 0.72 +2.3
778,420 - B158DRAFT_0770 0.73 -0.2
778,480 + B158DRAFT_0770 0.77 +0.3
778,520 - B158DRAFT_0770 0.80 -5.1
778,570 + B158DRAFT_0770 0.83 -2.5
778,655 - B158DRAFT_0770 0.89 -3.8
778,722 - -1.1
778,811 + +0.3
779,362 - -0.4
779,387 + -3.7
779,395 - -3.8
779,395 - -4.8
779,720 + +2.2
779,720 + -3.3
779,720 + -0.4
779,728 - -0.8
779,728 - +0.4
779,728 - -0.0
779,728 - -0.6
779,730 + +0.6
779,741 + +3.0
779,741 + -3.9
779,742 + -0.1
779,749 - -0.4
779,749 - +0.4
779,786 + +0.6
779,786 + -0.5
779,798 + -0.1
779,807 + +0.5
779,823 + -1.4
779,835 + +1.1
779,843 - -4.7
779,878 - B158DRAFT_0773 0.12 -0.0
779,925 + B158DRAFT_0773 0.18 -1.1
779,933 - B158DRAFT_0773 0.19 +0.7
779,959 + B158DRAFT_0773 0.23 -0.4
779,974 + B158DRAFT_0773 0.25 -0.1
780,029 + B158DRAFT_0773 0.32 +0.4
780,037 - B158DRAFT_0773 0.33 -1.6
780,039 + B158DRAFT_0773 0.33 +0.7
780,039 + B158DRAFT_0773 0.33 -2.3
780,044 + B158DRAFT_0773 0.34 -0.8
780,123 + B158DRAFT_0773 0.44 -0.2
780,128 + B158DRAFT_0773 0.45 +0.3
780,128 + B158DRAFT_0773 0.45 +1.4
780,131 - B158DRAFT_0773 0.45 +0.6
780,136 - B158DRAFT_0773 0.46 -1.2
780,136 - B158DRAFT_0773 0.46 -0.4
780,171 - B158DRAFT_0773 0.51 +0.8
780,171 - B158DRAFT_0773 0.51 +0.0
780,188 + B158DRAFT_0773 0.53 -2.9
780,188 + B158DRAFT_0773 0.53 +0.5
780,233 + B158DRAFT_0773 0.59 -3.6
780,233 + B158DRAFT_0773 0.59 +0.8
780,278 + B158DRAFT_0773 0.65 +0.6
780,281 - B158DRAFT_0773 0.65 +1.2
780,303 - B158DRAFT_0773 0.68 -0.2
780,346 + B158DRAFT_0773 0.73 -4.5

Or see this region's nucleotide sequence