Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2467

Experiment: m.b. Polymyxin B sulfate 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2466 and B158DRAFT_2467 are separated by 456 nucleotidesB158DRAFT_2467 and B158DRAFT_2468 are separated by 10 nucleotidesB158DRAFT_2468 and B158DRAFT_2469 are separated by 11 nucleotides B158DRAFT_2466: B158DRAFT_2466 - methionine synthase (B12-dependent) (EC 2.1.1.13), at 645,583 to 649,266 _2466 B158DRAFT_2467: B158DRAFT_2467 - Outer membrane cobalamin receptor protein, at 649,723 to 651,681 _2467 B158DRAFT_2468: B158DRAFT_2468 - ATP:cob(I)alamin adenosyltransferase, at 651,692 to 652,240 _2468 B158DRAFT_2469: B158DRAFT_2469 - hypothetical protein, at 652,252 to 652,779 _2469 Position (kb) 649 650 651 652Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 648.791 kb on + strand, within B158DRAFT_2466at 648.799 kb on - strand, within B158DRAFT_2466at 648.874 kb on + strand, within B158DRAFT_2466at 648.874 kb on + strand, within B158DRAFT_2466at 648.874 kb on + strand, within B158DRAFT_2466at 648.874 kb on + strand, within B158DRAFT_2466at 648.882 kb on - strand, within B158DRAFT_2466at 648.882 kb on - strand, within B158DRAFT_2466at 648.882 kb on - strand, within B158DRAFT_2466at 648.882 kb on - strand, within B158DRAFT_2466at 648.882 kb on - strand, within B158DRAFT_2466at 648.882 kb on - strand, within B158DRAFT_2466at 648.914 kb on + strandat 649.027 kb on + strandat 649.046 kb on - strandat 649.049 kb on + strandat 649.057 kb on - strandat 649.057 kb on - strandat 649.057 kb on - strandat 649.100 kb on + strandat 649.136 kb on - strandat 649.295 kb on + strandat 649.303 kb on - strandat 649.366 kb on - strandat 649.378 kb on - strandat 649.386 kb on - strandat 649.386 kb on - strandat 649.408 kb on + strandat 649.447 kb on + strandat 649.447 kb on + strandat 649.455 kb on - strandat 649.455 kb on - strandat 649.615 kb on + strandat 649.615 kb on + strandat 649.615 kb on + strandat 649.615 kb on + strandat 649.623 kb on - strandat 649.623 kb on - strandat 649.623 kb on - strandat 649.623 kb on - strandat 649.623 kb on - strandat 649.635 kb on - strandat 649.635 kb on - strandat 649.635 kb on - strandat 649.651 kb on + strandat 649.767 kb on - strandat 649.769 kb on + strandat 649.769 kb on + strandat 649.769 kb on + strandat 649.769 kb on + strandat 649.777 kb on - strandat 649.777 kb on - strandat 649.777 kb on - strandat 649.777 kb on - strandat 649.796 kb on + strandat 649.867 kb on + strandat 649.881 kb on + strandat 649.967 kb on - strand, within B158DRAFT_2467at 650.160 kb on - strand, within B158DRAFT_2467at 650.179 kb on + strand, within B158DRAFT_2467at 650.234 kb on - strand, within B158DRAFT_2467at 650.238 kb on + strand, within B158DRAFT_2467at 650.246 kb on - strand, within B158DRAFT_2467at 650.317 kb on - strand, within B158DRAFT_2467at 650.490 kb on + strand, within B158DRAFT_2467at 650.490 kb on + strand, within B158DRAFT_2467at 650.495 kb on + strand, within B158DRAFT_2467at 650.505 kb on + strand, within B158DRAFT_2467at 650.505 kb on + strand, within B158DRAFT_2467at 650.818 kb on - strand, within B158DRAFT_2467at 650.902 kb on + strand, within B158DRAFT_2467at 651.063 kb on + strand, within B158DRAFT_2467at 651.071 kb on - strand, within B158DRAFT_2467at 651.089 kb on + strand, within B158DRAFT_2467at 651.097 kb on - strand, within B158DRAFT_2467at 651.097 kb on - strand, within B158DRAFT_2467at 651.159 kb on + strand, within B158DRAFT_2467at 651.281 kb on - strand, within B158DRAFT_2467at 651.325 kb on - strand, within B158DRAFT_2467at 651.405 kb on - strand, within B158DRAFT_2467at 651.407 kb on + strand, within B158DRAFT_2467at 651.407 kb on + strand, within B158DRAFT_2467at 651.514 kb on + strandat 651.627 kb on + strandat 651.627 kb on + strandat 651.627 kb on + strandat 651.635 kb on - strandat 651.635 kb on - strandat 651.712 kb on + strandat 651.712 kb on + strandat 651.712 kb on + strandat 651.717 kb on + strandat 651.717 kb on + strandat 651.717 kb on + strandat 651.720 kb on - strandat 651.722 kb on + strandat 651.725 kb on - strandat 651.725 kb on - strandat 651.725 kb on - strandat 651.725 kb on - strandat 651.725 kb on - strandat 651.725 kb on - strandat 651.745 kb on - strandat 651.812 kb on - strand, within B158DRAFT_2468at 651.863 kb on + strand, within B158DRAFT_2468at 651.871 kb on - strand, within B158DRAFT_2468at 651.907 kb on + strand, within B158DRAFT_2468at 651.923 kb on + strand, within B158DRAFT_2468at 651.928 kb on + strand, within B158DRAFT_2468at 651.928 kb on + strand, within B158DRAFT_2468at 651.931 kb on - strand, within B158DRAFT_2468at 651.933 kb on + strand, within B158DRAFT_2468at 651.933 kb on + strand, within B158DRAFT_2468at 651.933 kb on + strand, within B158DRAFT_2468at 651.933 kb on + strand, within B158DRAFT_2468at 651.941 kb on - strand, within B158DRAFT_2468at 651.941 kb on - strand, within B158DRAFT_2468at 651.941 kb on - strand, within B158DRAFT_2468at 651.941 kb on - strand, within B158DRAFT_2468at 651.941 kb on - strand, within B158DRAFT_2468at 651.963 kb on - strand, within B158DRAFT_2468at 651.965 kb on - strand, within B158DRAFT_2468at 652.049 kb on - strand, within B158DRAFT_2468at 652.075 kb on + strand, within B158DRAFT_2468at 652.089 kb on + strand, within B158DRAFT_2468at 652.141 kb on + strand, within B158DRAFT_2468at 652.274 kb on + strandat 652.274 kb on + strandat 652.280 kb on + strandat 652.280 kb on + strandat 652.280 kb on + strandat 652.280 kb on + strandat 652.288 kb on - strandat 652.288 kb on - strandat 652.288 kb on - strandat 652.359 kb on + strand, within B158DRAFT_2469at 652.452 kb on + strand, within B158DRAFT_2469at 652.480 kb on + strand, within B158DRAFT_2469at 652.495 kb on - strand, within B158DRAFT_2469at 652.497 kb on + strand, within B158DRAFT_2469at 652.497 kb on + strand, within B158DRAFT_2469at 652.497 kb on + strand, within B158DRAFT_2469at 652.497 kb on + strand, within B158DRAFT_2469at 652.497 kb on + strand, within B158DRAFT_2469at 652.505 kb on - strand, within B158DRAFT_2469at 652.505 kb on - strand, within B158DRAFT_2469at 652.505 kb on - strand, within B158DRAFT_2469at 652.655 kb on - strand, within B158DRAFT_2469at 652.660 kb on + strand, within B158DRAFT_2469at 652.660 kb on + strand, within B158DRAFT_2469at 652.660 kb on + strand, within B158DRAFT_2469at 652.668 kb on - strand, within B158DRAFT_2469

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.00390625 mg/ml
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648,791 + B158DRAFT_2466 0.87 -0.2
648,799 - B158DRAFT_2466 0.87 -0.5
648,874 + B158DRAFT_2466 0.89 +0.6
648,874 + B158DRAFT_2466 0.89 -0.7
648,874 + B158DRAFT_2466 0.89 -0.9
648,874 + B158DRAFT_2466 0.89 -3.3
648,882 - B158DRAFT_2466 0.90 +0.2
648,882 - B158DRAFT_2466 0.90 -0.5
648,882 - B158DRAFT_2466 0.90 -1.3
648,882 - B158DRAFT_2466 0.90 -0.1
648,882 - B158DRAFT_2466 0.90 -1.6
648,882 - B158DRAFT_2466 0.90 +0.3
648,914 + +0.5
649,027 + +0.2
649,046 - -1.0
649,049 + +0.3
649,057 - -2.5
649,057 - +0.2
649,057 - -1.1
649,100 + -0.0
649,136 - -0.0
649,295 + -0.2
649,303 - -0.9
649,366 - -1.8
649,378 - -0.4
649,386 - +1.5
649,386 - -0.3
649,408 + -0.3
649,447 + -0.9
649,447 + +2.7
649,455 - -3.4
649,455 - -0.5
649,615 + -0.2
649,615 + +0.3
649,615 + -0.6
649,615 + -0.2
649,623 - +0.2
649,623 - -1.4
649,623 - +0.1
649,623 - -0.6
649,623 - -3.2
649,635 - +0.3
649,635 - +0.2
649,635 - -0.6
649,651 + +0.6
649,767 - +0.2
649,769 + -0.5
649,769 + -0.0
649,769 + +0.4
649,769 + +0.5
649,777 - -0.5
649,777 - +0.0
649,777 - +0.8
649,777 - -0.1
649,796 + -3.9
649,867 + +0.3
649,881 + -4.5
649,967 - B158DRAFT_2467 0.12 -0.4
650,160 - B158DRAFT_2467 0.22 -4.6
650,179 + B158DRAFT_2467 0.23 +1.8
650,234 - B158DRAFT_2467 0.26 -1.2
650,238 + B158DRAFT_2467 0.26 -0.8
650,246 - B158DRAFT_2467 0.27 -0.3
650,317 - B158DRAFT_2467 0.30 -0.5
650,490 + B158DRAFT_2467 0.39 +0.1
650,490 + B158DRAFT_2467 0.39 +1.3
650,495 + B158DRAFT_2467 0.39 +0.6
650,505 + B158DRAFT_2467 0.40 +0.6
650,505 + B158DRAFT_2467 0.40 +0.8
650,818 - B158DRAFT_2467 0.56 -3.0
650,902 + B158DRAFT_2467 0.60 -1.2
651,063 + B158DRAFT_2467 0.68 -1.6
651,071 - B158DRAFT_2467 0.69 -0.7
651,089 + B158DRAFT_2467 0.70 -0.9
651,097 - B158DRAFT_2467 0.70 -0.5
651,097 - B158DRAFT_2467 0.70 +0.2
651,159 + B158DRAFT_2467 0.73 +0.6
651,281 - B158DRAFT_2467 0.80 +0.1
651,325 - B158DRAFT_2467 0.82 -0.1
651,405 - B158DRAFT_2467 0.86 +0.3
651,407 + B158DRAFT_2467 0.86 -4.6
651,407 + B158DRAFT_2467 0.86 +1.2
651,514 + -0.2
651,627 + +0.7
651,627 + +0.3
651,627 + -0.4
651,635 - +0.1
651,635 - -3.2
651,712 + +0.3
651,712 + +0.3
651,712 + -1.8
651,717 + +0.3
651,717 + +0.3
651,717 + -0.2
651,720 - +1.1
651,722 + -0.2
651,725 - -1.0
651,725 - +0.6
651,725 - +1.5
651,725 - +1.0
651,725 - +0.5
651,725 - -1.5
651,745 - +0.4
651,812 - B158DRAFT_2468 0.22 +0.3
651,863 + B158DRAFT_2468 0.31 -0.5
651,871 - B158DRAFT_2468 0.33 +1.6
651,907 + B158DRAFT_2468 0.39 -3.1
651,923 + B158DRAFT_2468 0.42 -2.1
651,928 + B158DRAFT_2468 0.43 -0.8
651,928 + B158DRAFT_2468 0.43 -0.6
651,931 - B158DRAFT_2468 0.44 -0.1
651,933 + B158DRAFT_2468 0.44 +0.6
651,933 + B158DRAFT_2468 0.44 +0.2
651,933 + B158DRAFT_2468 0.44 -2.1
651,933 + B158DRAFT_2468 0.44 -5.5
651,941 - B158DRAFT_2468 0.45 -2.3
651,941 - B158DRAFT_2468 0.45 -0.9
651,941 - B158DRAFT_2468 0.45 +0.1
651,941 - B158DRAFT_2468 0.45 +0.6
651,941 - B158DRAFT_2468 0.45 +0.5
651,963 - B158DRAFT_2468 0.49 +0.3
651,965 - B158DRAFT_2468 0.50 -0.1
652,049 - B158DRAFT_2468 0.65 +0.9
652,075 + B158DRAFT_2468 0.70 -4.8
652,089 + B158DRAFT_2468 0.72 +0.3
652,141 + B158DRAFT_2468 0.82 -1.5
652,274 + -3.2
652,274 + -5.2
652,280 + -0.2
652,280 + -1.3
652,280 + -4.7
652,280 + -1.0
652,288 - +0.9
652,288 - -0.2
652,288 - -0.4
652,359 + B158DRAFT_2469 0.20 +0.8
652,452 + B158DRAFT_2469 0.38 +0.6
652,480 + B158DRAFT_2469 0.43 -1.1
652,495 - B158DRAFT_2469 0.46 +0.0
652,497 + B158DRAFT_2469 0.46 +0.6
652,497 + B158DRAFT_2469 0.46 -0.1
652,497 + B158DRAFT_2469 0.46 -0.1
652,497 + B158DRAFT_2469 0.46 +0.2
652,497 + B158DRAFT_2469 0.46 -0.0
652,505 - B158DRAFT_2469 0.48 +0.5
652,505 - B158DRAFT_2469 0.48 -0.1
652,505 - B158DRAFT_2469 0.48 -2.3
652,655 - B158DRAFT_2469 0.76 -4.3
652,660 + B158DRAFT_2469 0.77 +0.7
652,660 + B158DRAFT_2469 0.77 -0.2
652,660 + B158DRAFT_2469 0.77 -0.2
652,668 - B158DRAFT_2469 0.79 -3.7

Or see this region's nucleotide sequence