Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0838

Experiment: m.b. Polymyxin B sulfate 0.00390625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0836 and B158DRAFT_0837 overlap by 1 nucleotidesB158DRAFT_0837 and B158DRAFT_0838 overlap by 11 nucleotidesB158DRAFT_0838 and B158DRAFT_0839 are separated by 66 nucleotides B158DRAFT_0836: B158DRAFT_0836 - Type II secretory pathway, component ExeA (predicted ATPase), at 846,046 to 847,779 _0836 B158DRAFT_0837: B158DRAFT_0837 - hypothetical protein, at 847,779 to 848,597 _0837 B158DRAFT_0838: B158DRAFT_0838 - Predicted Zn-dependent peptidases, at 848,587 to 851,451 _0838 B158DRAFT_0839: B158DRAFT_0839 - NOL1/NOP2/sun family putative RNA methylase, at 851,518 to 852,984 _0839 Position (kb) 848 849 850 851 852Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 847.865 kb on - strand, within B158DRAFT_0837at 848.000 kb on - strand, within B158DRAFT_0837at 848.084 kb on + strand, within B158DRAFT_0837at 848.220 kb on - strand, within B158DRAFT_0837at 848.318 kb on - strand, within B158DRAFT_0837at 848.330 kb on - strand, within B158DRAFT_0837at 848.404 kb on + strand, within B158DRAFT_0837at 848.411 kb on - strand, within B158DRAFT_0837at 848.416 kb on - strand, within B158DRAFT_0837at 848.479 kb on + strand, within B158DRAFT_0837at 848.479 kb on + strand, within B158DRAFT_0837at 848.487 kb on - strand, within B158DRAFT_0837at 848.568 kb on + strandat 848.574 kb on + strandat 848.804 kb on + strandat 848.804 kb on + strandat 848.804 kb on + strandat 848.829 kb on - strandat 848.855 kb on + strandat 848.864 kb on - strandat 849.093 kb on + strand, within B158DRAFT_0838at 849.101 kb on - strand, within B158DRAFT_0838at 849.101 kb on - strand, within B158DRAFT_0838at 849.101 kb on - strand, within B158DRAFT_0838at 849.155 kb on + strand, within B158DRAFT_0838at 849.220 kb on - strand, within B158DRAFT_0838at 849.400 kb on + strand, within B158DRAFT_0838at 849.418 kb on - strand, within B158DRAFT_0838at 849.464 kb on + strand, within B158DRAFT_0838at 849.464 kb on + strand, within B158DRAFT_0838at 849.469 kb on + strand, within B158DRAFT_0838at 849.469 kb on + strand, within B158DRAFT_0838at 849.469 kb on + strand, within B158DRAFT_0838at 849.474 kb on + strand, within B158DRAFT_0838at 849.507 kb on + strand, within B158DRAFT_0838at 849.624 kb on + strand, within B158DRAFT_0838at 849.632 kb on - strand, within B158DRAFT_0838at 849.632 kb on - strand, within B158DRAFT_0838at 849.658 kb on - strand, within B158DRAFT_0838at 849.673 kb on - strand, within B158DRAFT_0838at 849.732 kb on - strand, within B158DRAFT_0838at 849.754 kb on + strand, within B158DRAFT_0838at 849.787 kb on - strand, within B158DRAFT_0838at 849.792 kb on + strand, within B158DRAFT_0838at 849.818 kb on + strand, within B158DRAFT_0838at 849.896 kb on + strand, within B158DRAFT_0838at 849.896 kb on + strand, within B158DRAFT_0838at 849.904 kb on - strand, within B158DRAFT_0838at 849.904 kb on - strand, within B158DRAFT_0838at 849.933 kb on + strand, within B158DRAFT_0838at 849.982 kb on - strand, within B158DRAFT_0838at 850.069 kb on + strand, within B158DRAFT_0838at 850.077 kb on - strand, within B158DRAFT_0838at 850.077 kb on - strand, within B158DRAFT_0838at 850.204 kb on + strand, within B158DRAFT_0838at 850.275 kb on - strand, within B158DRAFT_0838at 850.351 kb on + strand, within B158DRAFT_0838at 850.352 kb on + strand, within B158DRAFT_0838at 850.359 kb on - strand, within B158DRAFT_0838at 850.359 kb on - strand, within B158DRAFT_0838at 850.377 kb on + strand, within B158DRAFT_0838at 850.377 kb on + strand, within B158DRAFT_0838at 850.377 kb on + strand, within B158DRAFT_0838at 850.377 kb on + strand, within B158DRAFT_0838at 850.385 kb on - strand, within B158DRAFT_0838at 850.385 kb on - strand, within B158DRAFT_0838at 850.422 kb on + strand, within B158DRAFT_0838at 850.430 kb on - strand, within B158DRAFT_0838at 850.439 kb on - strand, within B158DRAFT_0838at 850.560 kb on + strand, within B158DRAFT_0838at 850.657 kb on + strand, within B158DRAFT_0838at 850.665 kb on - strand, within B158DRAFT_0838at 850.690 kb on - strand, within B158DRAFT_0838at 850.755 kb on + strand, within B158DRAFT_0838at 850.793 kb on + strand, within B158DRAFT_0838at 850.793 kb on + strand, within B158DRAFT_0838at 850.793 kb on + strand, within B158DRAFT_0838at 850.793 kb on + strand, within B158DRAFT_0838at 850.793 kb on + strand, within B158DRAFT_0838at 850.801 kb on - strand, within B158DRAFT_0838at 850.801 kb on - strand, within B158DRAFT_0838at 850.801 kb on - strand, within B158DRAFT_0838at 850.901 kb on - strand, within B158DRAFT_0838at 850.902 kb on + strand, within B158DRAFT_0838at 850.908 kb on + strand, within B158DRAFT_0838at 850.909 kb on + strand, within B158DRAFT_0838at 850.910 kb on + strand, within B158DRAFT_0838at 850.911 kb on - strand, within B158DRAFT_0838at 850.916 kb on - strand, within B158DRAFT_0838at 850.917 kb on - strand, within B158DRAFT_0838at 850.917 kb on - strand, within B158DRAFT_0838at 850.947 kb on - strand, within B158DRAFT_0838at 850.949 kb on - strand, within B158DRAFT_0838at 850.988 kb on + strand, within B158DRAFT_0838at 851.115 kb on + strand, within B158DRAFT_0838at 851.132 kb on + strand, within B158DRAFT_0838at 851.204 kb on - strandat 851.204 kb on - strandat 851.535 kb on + strandat 851.558 kb on - strandat 851.606 kb on + strandat 851.606 kb on + strandat 851.807 kb on - strand, within B158DRAFT_0839at 851.807 kb on - strand, within B158DRAFT_0839at 851.807 kb on - strand, within B158DRAFT_0839at 851.827 kb on - strand, within B158DRAFT_0839at 851.827 kb on - strand, within B158DRAFT_0839at 851.849 kb on - strand, within B158DRAFT_0839at 851.850 kb on - strand, within B158DRAFT_0839at 851.917 kb on + strand, within B158DRAFT_0839at 851.917 kb on + strand, within B158DRAFT_0839at 851.922 kb on + strand, within B158DRAFT_0839at 851.922 kb on + strand, within B158DRAFT_0839at 851.922 kb on + strand, within B158DRAFT_0839at 851.922 kb on + strand, within B158DRAFT_0839at 851.922 kb on + strand, within B158DRAFT_0839at 851.925 kb on - strand, within B158DRAFT_0839at 851.927 kb on + strand, within B158DRAFT_0839at 851.927 kb on + strand, within B158DRAFT_0839at 851.927 kb on + strand, within B158DRAFT_0839at 851.927 kb on + strand, within B158DRAFT_0839at 851.927 kb on + strand, within B158DRAFT_0839at 851.927 kb on + strand, within B158DRAFT_0839at 851.927 kb on + strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.930 kb on - strand, within B158DRAFT_0839at 851.935 kb on - strand, within B158DRAFT_0839at 851.935 kb on - strand, within B158DRAFT_0839at 851.935 kb on - strand, within B158DRAFT_0839at 851.937 kb on - strand, within B158DRAFT_0839at 852.083 kb on + strand, within B158DRAFT_0839at 852.083 kb on + strand, within B158DRAFT_0839at 852.095 kb on + strand, within B158DRAFT_0839at 852.095 kb on + strand, within B158DRAFT_0839at 852.103 kb on - strand, within B158DRAFT_0839at 852.155 kb on + strand, within B158DRAFT_0839at 852.186 kb on + strand, within B158DRAFT_0839at 852.212 kb on + strand, within B158DRAFT_0839at 852.220 kb on - strand, within B158DRAFT_0839at 852.222 kb on + strand, within B158DRAFT_0839at 852.222 kb on + strand, within B158DRAFT_0839at 852.233 kb on + strand, within B158DRAFT_0839at 852.233 kb on + strand, within B158DRAFT_0839at 852.233 kb on + strand, within B158DRAFT_0839at 852.233 kb on + strand, within B158DRAFT_0839at 852.233 kb on + strand, within B158DRAFT_0839at 852.241 kb on - strand, within B158DRAFT_0839at 852.241 kb on - strand, within B158DRAFT_0839at 852.241 kb on - strand, within B158DRAFT_0839at 852.245 kb on - strand, within B158DRAFT_0839at 852.256 kb on + strand, within B158DRAFT_0839at 852.271 kb on - strand, within B158DRAFT_0839at 852.297 kb on + strand, within B158DRAFT_0839at 852.305 kb on - strand, within B158DRAFT_0839at 852.307 kb on + strand, within B158DRAFT_0839at 852.307 kb on + strand, within B158DRAFT_0839at 852.307 kb on + strand, within B158DRAFT_0839at 852.315 kb on - strand, within B158DRAFT_0839at 852.352 kb on - strand, within B158DRAFT_0839at 852.364 kb on + strand, within B158DRAFT_0839at 852.390 kb on + strand, within B158DRAFT_0839at 852.406 kb on + strand, within B158DRAFT_0839at 852.406 kb on + strand, within B158DRAFT_0839at 852.414 kb on - strand, within B158DRAFT_0839

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.00390625 mg/ml
remove
847,865 - B158DRAFT_0837 0.11 +0.4
848,000 - B158DRAFT_0837 0.27 -0.2
848,084 + B158DRAFT_0837 0.37 +0.0
848,220 - B158DRAFT_0837 0.54 +0.4
848,318 - B158DRAFT_0837 0.66 +0.6
848,330 - B158DRAFT_0837 0.67 -0.3
848,404 + B158DRAFT_0837 0.76 -0.3
848,411 - B158DRAFT_0837 0.77 +1.4
848,416 - B158DRAFT_0837 0.78 -0.3
848,479 + B158DRAFT_0837 0.85 +1.5
848,479 + B158DRAFT_0837 0.85 -0.7
848,487 - B158DRAFT_0837 0.86 +0.8
848,568 + +0.6
848,574 + -0.3
848,804 + -0.9
848,804 + -1.7
848,804 + -1.3
848,829 - -4.1
848,855 + -0.9
848,864 - -0.7
849,093 + B158DRAFT_0838 0.18 -0.2
849,101 - B158DRAFT_0838 0.18 +0.1
849,101 - B158DRAFT_0838 0.18 -3.4
849,101 - B158DRAFT_0838 0.18 -0.2
849,155 + B158DRAFT_0838 0.20 -1.4
849,220 - B158DRAFT_0838 0.22 -0.8
849,400 + B158DRAFT_0838 0.28 +0.1
849,418 - B158DRAFT_0838 0.29 +0.2
849,464 + B158DRAFT_0838 0.31 +0.1
849,464 + B158DRAFT_0838 0.31 -0.2
849,469 + B158DRAFT_0838 0.31 -0.5
849,469 + B158DRAFT_0838 0.31 -0.1
849,469 + B158DRAFT_0838 0.31 -0.4
849,474 + B158DRAFT_0838 0.31 +1.5
849,507 + B158DRAFT_0838 0.32 -5.6
849,624 + B158DRAFT_0838 0.36 -3.4
849,632 - B158DRAFT_0838 0.36 -1.4
849,632 - B158DRAFT_0838 0.36 +0.0
849,658 - B158DRAFT_0838 0.37 -0.8
849,673 - B158DRAFT_0838 0.38 -0.6
849,732 - B158DRAFT_0838 0.40 -4.0
849,754 + B158DRAFT_0838 0.41 -0.6
849,787 - B158DRAFT_0838 0.42 +0.0
849,792 + B158DRAFT_0838 0.42 -0.3
849,818 + B158DRAFT_0838 0.43 -0.1
849,896 + B158DRAFT_0838 0.46 +0.6
849,896 + B158DRAFT_0838 0.46 +0.2
849,904 - B158DRAFT_0838 0.46 +1.4
849,904 - B158DRAFT_0838 0.46 -0.2
849,933 + B158DRAFT_0838 0.47 -0.4
849,982 - B158DRAFT_0838 0.49 +0.1
850,069 + B158DRAFT_0838 0.52 -2.1
850,077 - B158DRAFT_0838 0.52 -0.4
850,077 - B158DRAFT_0838 0.52 -1.2
850,204 + B158DRAFT_0838 0.56 -0.8
850,275 - B158DRAFT_0838 0.59 +0.1
850,351 + B158DRAFT_0838 0.62 +0.5
850,352 + B158DRAFT_0838 0.62 -0.1
850,359 - B158DRAFT_0838 0.62 +0.3
850,359 - B158DRAFT_0838 0.62 +0.1
850,377 + B158DRAFT_0838 0.62 -1.2
850,377 + B158DRAFT_0838 0.62 -1.2
850,377 + B158DRAFT_0838 0.62 +0.5
850,377 + B158DRAFT_0838 0.62 -1.7
850,385 - B158DRAFT_0838 0.63 +0.4
850,385 - B158DRAFT_0838 0.63 -0.0
850,422 + B158DRAFT_0838 0.64 -0.5
850,430 - B158DRAFT_0838 0.64 -3.1
850,439 - B158DRAFT_0838 0.65 +0.7
850,560 + B158DRAFT_0838 0.69 +0.1
850,657 + B158DRAFT_0838 0.72 -2.9
850,665 - B158DRAFT_0838 0.73 +0.2
850,690 - B158DRAFT_0838 0.73 +0.1
850,755 + B158DRAFT_0838 0.76 -1.2
850,793 + B158DRAFT_0838 0.77 -2.4
850,793 + B158DRAFT_0838 0.77 +0.5
850,793 + B158DRAFT_0838 0.77 +1.1
850,793 + B158DRAFT_0838 0.77 -0.8
850,793 + B158DRAFT_0838 0.77 -0.9
850,801 - B158DRAFT_0838 0.77 +0.3
850,801 - B158DRAFT_0838 0.77 -0.2
850,801 - B158DRAFT_0838 0.77 +0.6
850,901 - B158DRAFT_0838 0.81 -0.7
850,902 + B158DRAFT_0838 0.81 +0.0
850,908 + B158DRAFT_0838 0.81 -0.6
850,909 + B158DRAFT_0838 0.81 -0.1
850,910 + B158DRAFT_0838 0.81 -0.5
850,911 - B158DRAFT_0838 0.81 -0.7
850,916 - B158DRAFT_0838 0.81 +0.7
850,917 - B158DRAFT_0838 0.81 -0.2
850,917 - B158DRAFT_0838 0.81 +0.6
850,947 - B158DRAFT_0838 0.82 +0.4
850,949 - B158DRAFT_0838 0.82 -0.6
850,988 + B158DRAFT_0838 0.84 -0.1
851,115 + B158DRAFT_0838 0.88 -0.4
851,132 + B158DRAFT_0838 0.89 +0.2
851,204 - -2.9
851,204 - -3.4
851,535 + -2.2
851,558 - +1.1
851,606 + -0.2
851,606 + -0.8
851,807 - B158DRAFT_0839 0.20 -3.3
851,807 - B158DRAFT_0839 0.20 +0.1
851,807 - B158DRAFT_0839 0.20 -0.9
851,827 - B158DRAFT_0839 0.21 +0.4
851,827 - B158DRAFT_0839 0.21 +0.0
851,849 - B158DRAFT_0839 0.23 -1.5
851,850 - B158DRAFT_0839 0.23 +0.6
851,917 + B158DRAFT_0839 0.27 -2.0
851,917 + B158DRAFT_0839 0.27 +1.1
851,922 + B158DRAFT_0839 0.28 +0.6
851,922 + B158DRAFT_0839 0.28 +0.5
851,922 + B158DRAFT_0839 0.28 -1.0
851,922 + B158DRAFT_0839 0.28 -0.0
851,922 + B158DRAFT_0839 0.28 -0.1
851,925 - B158DRAFT_0839 0.28 +0.3
851,927 + B158DRAFT_0839 0.28 +0.7
851,927 + B158DRAFT_0839 0.28 -2.5
851,927 + B158DRAFT_0839 0.28 +0.2
851,927 + B158DRAFT_0839 0.28 -2.2
851,927 + B158DRAFT_0839 0.28 -0.4
851,927 + B158DRAFT_0839 0.28 -0.1
851,927 + B158DRAFT_0839 0.28 -1.0
851,930 - B158DRAFT_0839 0.28 -0.2
851,930 - B158DRAFT_0839 0.28 -0.8
851,930 - B158DRAFT_0839 0.28 -0.2
851,930 - B158DRAFT_0839 0.28 -0.2
851,930 - B158DRAFT_0839 0.28 +0.3
851,930 - B158DRAFT_0839 0.28 -0.3
851,930 - B158DRAFT_0839 0.28 +0.8
851,930 - B158DRAFT_0839 0.28 +0.3
851,930 - B158DRAFT_0839 0.28 -5.2
851,930 - B158DRAFT_0839 0.28 -0.0
851,935 - B158DRAFT_0839 0.28 +2.1
851,935 - B158DRAFT_0839 0.28 +0.8
851,935 - B158DRAFT_0839 0.28 -1.2
851,937 - B158DRAFT_0839 0.29 +0.0
852,083 + B158DRAFT_0839 0.39 -1.5
852,083 + B158DRAFT_0839 0.39 -0.6
852,095 + B158DRAFT_0839 0.39 -4.0
852,095 + B158DRAFT_0839 0.39 -0.6
852,103 - B158DRAFT_0839 0.40 -0.4
852,155 + B158DRAFT_0839 0.43 -1.3
852,186 + B158DRAFT_0839 0.46 -0.7
852,212 + B158DRAFT_0839 0.47 -4.1
852,220 - B158DRAFT_0839 0.48 -2.6
852,222 + B158DRAFT_0839 0.48 -0.3
852,222 + B158DRAFT_0839 0.48 -1.9
852,233 + B158DRAFT_0839 0.49 +0.1
852,233 + B158DRAFT_0839 0.49 -0.3
852,233 + B158DRAFT_0839 0.49 -0.8
852,233 + B158DRAFT_0839 0.49 -0.2
852,233 + B158DRAFT_0839 0.49 -1.4
852,241 - B158DRAFT_0839 0.49 -0.8
852,241 - B158DRAFT_0839 0.49 -0.2
852,241 - B158DRAFT_0839 0.49 -0.1
852,245 - B158DRAFT_0839 0.50 +0.2
852,256 + B158DRAFT_0839 0.50 +0.5
852,271 - B158DRAFT_0839 0.51 +0.9
852,297 + B158DRAFT_0839 0.53 +0.8
852,305 - B158DRAFT_0839 0.54 -4.0
852,307 + B158DRAFT_0839 0.54 +0.1
852,307 + B158DRAFT_0839 0.54 -4.1
852,307 + B158DRAFT_0839 0.54 -0.6
852,315 - B158DRAFT_0839 0.54 +0.4
852,352 - B158DRAFT_0839 0.57 -5.0
852,364 + B158DRAFT_0839 0.58 -0.1
852,390 + B158DRAFT_0839 0.59 -2.0
852,406 + B158DRAFT_0839 0.61 -5.2
852,406 + B158DRAFT_0839 0.61 -4.3
852,414 - B158DRAFT_0839 0.61 +1.4

Or see this region's nucleotide sequence