Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0623

Experiment: m.b. Polymyxin B sulfate 0.00390625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0621 and B158DRAFT_0622 are separated by 33 nucleotidesB158DRAFT_0622 and B158DRAFT_0623 overlap by 20 nucleotidesB158DRAFT_0623 and B158DRAFT_0624 are separated by 263 nucleotides B158DRAFT_0621: B158DRAFT_0621 - Deoxyribodipyrimidine photolyase, at 630,062 to 631,441 _0621 B158DRAFT_0622: B158DRAFT_0622 - hypothetical protein, at 631,475 to 632,071 _0622 B158DRAFT_0623: B158DRAFT_0623 - hypothetical protein, at 632,052 to 632,540 _0623 B158DRAFT_0624: B158DRAFT_0624 - Fatty-acid desaturase, at 632,804 to 633,715 _0624 Position (kb) 632 633Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 631.380 kb on + strandat 631.422 kb on + strandat 631.522 kb on + strandat 631.585 kb on + strand, within B158DRAFT_0622at 631.593 kb on - strand, within B158DRAFT_0622at 631.593 kb on - strand, within B158DRAFT_0622at 631.612 kb on + strand, within B158DRAFT_0622at 631.612 kb on + strand, within B158DRAFT_0622at 631.612 kb on + strand, within B158DRAFT_0622at 631.619 kb on + strand, within B158DRAFT_0622at 631.620 kb on - strand, within B158DRAFT_0622at 631.632 kb on - strand, within B158DRAFT_0622at 631.632 kb on - strand, within B158DRAFT_0622at 631.678 kb on - strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.680 kb on + strand, within B158DRAFT_0622at 631.688 kb on - strand, within B158DRAFT_0622at 631.688 kb on - strand, within B158DRAFT_0622at 631.688 kb on - strand, within B158DRAFT_0622at 631.688 kb on - strand, within B158DRAFT_0622at 631.725 kb on + strand, within B158DRAFT_0622at 631.725 kb on + strand, within B158DRAFT_0622at 631.725 kb on + strand, within B158DRAFT_0622at 631.761 kb on + strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.862 kb on - strand, within B158DRAFT_0622at 631.959 kb on + strand, within B158DRAFT_0622at 631.959 kb on + strand, within B158DRAFT_0622at 631.959 kb on + strand, within B158DRAFT_0622at 631.959 kb on + strand, within B158DRAFT_0622at 631.962 kb on - strand, within B158DRAFT_0622at 631.965 kb on + strand, within B158DRAFT_0622at 631.967 kb on - strand, within B158DRAFT_0622at 631.967 kb on - strand, within B158DRAFT_0622at 631.968 kb on - strand, within B158DRAFT_0622at 631.973 kb on - strand, within B158DRAFT_0622at 631.973 kb on - strand, within B158DRAFT_0622at 631.975 kb on + strand, within B158DRAFT_0622at 631.994 kb on + strand, within B158DRAFT_0622at 632.047 kb on + strandat 632.242 kb on - strand, within B158DRAFT_0623at 632.242 kb on - strand, within B158DRAFT_0623at 632.266 kb on + strand, within B158DRAFT_0623at 632.295 kb on + strand, within B158DRAFT_0623at 632.325 kb on - strand, within B158DRAFT_0623at 632.331 kb on - strand, within B158DRAFT_0623at 632.359 kb on - strand, within B158DRAFT_0623at 632.428 kb on + strand, within B158DRAFT_0623at 632.428 kb on + strand, within B158DRAFT_0623at 632.436 kb on - strand, within B158DRAFT_0623at 632.851 kb on + strandat 632.856 kb on + strandat 632.856 kb on + strandat 632.866 kb on + strandat 632.906 kb on + strand, within B158DRAFT_0624at 632.906 kb on + strand, within B158DRAFT_0624at 632.947 kb on + strand, within B158DRAFT_0624at 632.947 kb on + strand, within B158DRAFT_0624at 632.955 kb on - strand, within B158DRAFT_0624at 632.955 kb on - strand, within B158DRAFT_0624at 632.955 kb on - strand, within B158DRAFT_0624at 633.087 kb on - strand, within B158DRAFT_0624at 633.090 kb on + strand, within B158DRAFT_0624at 633.098 kb on - strand, within B158DRAFT_0624at 633.098 kb on - strand, within B158DRAFT_0624at 633.098 kb on - strand, within B158DRAFT_0624at 633.098 kb on - strand, within B158DRAFT_0624at 633.100 kb on + strand, within B158DRAFT_0624at 633.100 kb on - strand, within B158DRAFT_0624at 633.108 kb on - strand, within B158DRAFT_0624at 633.108 kb on - strand, within B158DRAFT_0624at 633.182 kb on - strand, within B158DRAFT_0624at 633.182 kb on - strand, within B158DRAFT_0624at 633.251 kb on + strand, within B158DRAFT_0624at 633.259 kb on - strand, within B158DRAFT_0624at 633.270 kb on + strand, within B158DRAFT_0624at 633.278 kb on - strand, within B158DRAFT_0624at 633.326 kb on + strand, within B158DRAFT_0624at 633.326 kb on + strand, within B158DRAFT_0624at 633.326 kb on + strand, within B158DRAFT_0624at 633.326 kb on + strand, within B158DRAFT_0624at 633.339 kb on + strand, within B158DRAFT_0624at 633.366 kb on + strand, within B158DRAFT_0624at 633.366 kb on + strand, within B158DRAFT_0624at 633.374 kb on - strand, within B158DRAFT_0624at 633.395 kb on + strand, within B158DRAFT_0624at 633.395 kb on + strand, within B158DRAFT_0624at 633.403 kb on - strand, within B158DRAFT_0624at 633.530 kb on + strand, within B158DRAFT_0624at 633.530 kb on + strand, within B158DRAFT_0624at 633.530 kb on + strand, within B158DRAFT_0624at 633.538 kb on - strand, within B158DRAFT_0624

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.00390625 mg/ml
remove
631,380 + -2.2
631,422 + -2.1
631,522 + +0.1
631,585 + B158DRAFT_0622 0.18 -2.0
631,593 - B158DRAFT_0622 0.20 +0.4
631,593 - B158DRAFT_0622 0.20 +1.0
631,612 + B158DRAFT_0622 0.23 -0.6
631,612 + B158DRAFT_0622 0.23 -0.0
631,612 + B158DRAFT_0622 0.23 +0.6
631,619 + B158DRAFT_0622 0.24 -1.0
631,620 - B158DRAFT_0622 0.24 -0.1
631,632 - B158DRAFT_0622 0.26 +0.3
631,632 - B158DRAFT_0622 0.26 -0.8
631,678 - B158DRAFT_0622 0.34 +0.0
631,680 + B158DRAFT_0622 0.34 -1.3
631,680 + B158DRAFT_0622 0.34 -0.2
631,680 + B158DRAFT_0622 0.34 +1.0
631,680 + B158DRAFT_0622 0.34 +0.6
631,680 + B158DRAFT_0622 0.34 +1.0
631,680 + B158DRAFT_0622 0.34 +0.5
631,680 + B158DRAFT_0622 0.34 -3.6
631,680 + B158DRAFT_0622 0.34 +0.2
631,680 + B158DRAFT_0622 0.34 -0.1
631,680 + B158DRAFT_0622 0.34 -4.6
631,680 + B158DRAFT_0622 0.34 +0.4
631,680 + B158DRAFT_0622 0.34 -0.4
631,680 + B158DRAFT_0622 0.34 -0.5
631,680 + B158DRAFT_0622 0.34 -0.1
631,688 - B158DRAFT_0622 0.36 -0.6
631,688 - B158DRAFT_0622 0.36 -0.8
631,688 - B158DRAFT_0622 0.36 -2.2
631,688 - B158DRAFT_0622 0.36 -0.3
631,725 + B158DRAFT_0622 0.42 +0.1
631,725 + B158DRAFT_0622 0.42 -4.1
631,725 + B158DRAFT_0622 0.42 -0.6
631,761 + B158DRAFT_0622 0.48 -0.1
631,862 - B158DRAFT_0622 0.65 +1.1
631,862 - B158DRAFT_0622 0.65 -0.7
631,862 - B158DRAFT_0622 0.65 -0.1
631,862 - B158DRAFT_0622 0.65 -0.1
631,862 - B158DRAFT_0622 0.65 -1.7
631,959 + B158DRAFT_0622 0.81 +1.8
631,959 + B158DRAFT_0622 0.81 -0.2
631,959 + B158DRAFT_0622 0.81 -0.5
631,959 + B158DRAFT_0622 0.81 -0.5
631,962 - B158DRAFT_0622 0.82 -1.4
631,965 + B158DRAFT_0622 0.82 +0.7
631,967 - B158DRAFT_0622 0.82 +0.2
631,967 - B158DRAFT_0622 0.82 +0.3
631,968 - B158DRAFT_0622 0.83 -0.5
631,973 - B158DRAFT_0622 0.83 -0.4
631,973 - B158DRAFT_0622 0.83 -0.6
631,975 + B158DRAFT_0622 0.84 +1.6
631,994 + B158DRAFT_0622 0.87 +0.2
632,047 + +1.2
632,242 - B158DRAFT_0623 0.39 +1.0
632,242 - B158DRAFT_0623 0.39 -3.1
632,266 + B158DRAFT_0623 0.44 -4.7
632,295 + B158DRAFT_0623 0.50 -0.9
632,325 - B158DRAFT_0623 0.56 -0.3
632,331 - B158DRAFT_0623 0.57 -2.0
632,359 - B158DRAFT_0623 0.63 +0.1
632,428 + B158DRAFT_0623 0.77 -0.0
632,428 + B158DRAFT_0623 0.77 -1.4
632,436 - B158DRAFT_0623 0.79 -1.6
632,851 + -0.3
632,856 + -2.2
632,856 + +0.4
632,866 + +0.2
632,906 + B158DRAFT_0624 0.11 -0.1
632,906 + B158DRAFT_0624 0.11 -0.5
632,947 + B158DRAFT_0624 0.16 +0.3
632,947 + B158DRAFT_0624 0.16 -0.4
632,955 - B158DRAFT_0624 0.17 +0.0
632,955 - B158DRAFT_0624 0.17 -0.2
632,955 - B158DRAFT_0624 0.17 +0.2
633,087 - B158DRAFT_0624 0.31 -0.5
633,090 + B158DRAFT_0624 0.31 +0.7
633,098 - B158DRAFT_0624 0.32 -0.4
633,098 - B158DRAFT_0624 0.32 +1.2
633,098 - B158DRAFT_0624 0.32 +0.1
633,098 - B158DRAFT_0624 0.32 -1.2
633,100 + B158DRAFT_0624 0.32 +0.2
633,100 - B158DRAFT_0624 0.32 -0.0
633,108 - B158DRAFT_0624 0.33 +0.2
633,108 - B158DRAFT_0624 0.33 +0.4
633,182 - B158DRAFT_0624 0.41 -1.9
633,182 - B158DRAFT_0624 0.41 +0.8
633,251 + B158DRAFT_0624 0.49 -0.0
633,259 - B158DRAFT_0624 0.50 +0.4
633,270 + B158DRAFT_0624 0.51 -0.9
633,278 - B158DRAFT_0624 0.52 -0.2
633,326 + B158DRAFT_0624 0.57 +1.8
633,326 + B158DRAFT_0624 0.57 +0.6
633,326 + B158DRAFT_0624 0.57 -1.1
633,326 + B158DRAFT_0624 0.57 -1.3
633,339 + B158DRAFT_0624 0.59 -0.3
633,366 + B158DRAFT_0624 0.62 -1.5
633,366 + B158DRAFT_0624 0.62 -0.7
633,374 - B158DRAFT_0624 0.62 +0.4
633,395 + B158DRAFT_0624 0.65 -0.5
633,395 + B158DRAFT_0624 0.65 -0.8
633,403 - B158DRAFT_0624 0.66 +1.4
633,530 + B158DRAFT_0624 0.80 -1.1
633,530 + B158DRAFT_0624 0.80 +0.0
633,530 + B158DRAFT_0624 0.80 +0.3
633,538 - B158DRAFT_0624 0.80 -0.2

Or see this region's nucleotide sequence