Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0228

Experiment: m.b. Polymyxin B sulfate 0.00390625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0227 and B158DRAFT_0228 are separated by 15 nucleotidesB158DRAFT_0228 and B158DRAFT_0229 are separated by 28 nucleotides B158DRAFT_0227: B158DRAFT_0227 - TRAP transporter, DctM subunit, at 231,177 to 232,565 _0227 B158DRAFT_0228: B158DRAFT_0228 - glutamate racemase (EC 5.1.1.3), at 232,581 to 233,399 _0228 B158DRAFT_0229: B158DRAFT_0229 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 233,428 to 234,531 _0229 Position (kb) 232 233 234Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 231.649 kb on + strand, within B158DRAFT_0227at 231.673 kb on + strand, within B158DRAFT_0227at 231.704 kb on + strand, within B158DRAFT_0227at 231.704 kb on + strand, within B158DRAFT_0227at 231.730 kb on + strand, within B158DRAFT_0227at 231.851 kb on + strand, within B158DRAFT_0227at 231.908 kb on + strand, within B158DRAFT_0227at 231.918 kb on + strand, within B158DRAFT_0227at 231.957 kb on + strand, within B158DRAFT_0227at 231.964 kb on + strand, within B158DRAFT_0227at 231.964 kb on + strand, within B158DRAFT_0227at 231.964 kb on + strand, within B158DRAFT_0227at 231.964 kb on + strand, within B158DRAFT_0227at 231.964 kb on + strand, within B158DRAFT_0227at 231.964 kb on + strand, within B158DRAFT_0227at 231.964 kb on + strand, within B158DRAFT_0227at 231.964 kb on + strand, within B158DRAFT_0227at 231.964 kb on + strand, within B158DRAFT_0227at 232.067 kb on + strand, within B158DRAFT_0227at 232.067 kb on + strand, within B158DRAFT_0227at 232.067 kb on + strand, within B158DRAFT_0227at 232.067 kb on + strand, within B158DRAFT_0227at 232.322 kb on + strand, within B158DRAFT_0227at 232.330 kb on + strand, within B158DRAFT_0227at 232.426 kb on + strand, within B158DRAFT_0227at 232.426 kb on + strand, within B158DRAFT_0227at 232.452 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.474 kb on + strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.482 kb on - strandat 233.511 kb on - strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.531 kb on + strandat 233.536 kb on + strandat 233.536 kb on + strandat 233.539 kb on - strand, within B158DRAFT_0229at 233.539 kb on - strand, within B158DRAFT_0229at 233.539 kb on - strand, within B158DRAFT_0229at 233.645 kb on + strand, within B158DRAFT_0229at 233.672 kb on + strand, within B158DRAFT_0229at 233.707 kb on - strand, within B158DRAFT_0229at 233.778 kb on - strand, within B158DRAFT_0229at 233.816 kb on + strand, within B158DRAFT_0229at 233.816 kb on + strand, within B158DRAFT_0229at 233.816 kb on + strand, within B158DRAFT_0229at 233.849 kb on + strand, within B158DRAFT_0229at 233.877 kb on - strand, within B158DRAFT_0229at 233.893 kb on + strand, within B158DRAFT_0229at 233.941 kb on + strand, within B158DRAFT_0229at 233.941 kb on + strand, within B158DRAFT_0229at 233.949 kb on - strand, within B158DRAFT_0229at 233.961 kb on + strand, within B158DRAFT_0229at 233.969 kb on - strand, within B158DRAFT_0229at 234.070 kb on + strand, within B158DRAFT_0229at 234.078 kb on - strand, within B158DRAFT_0229at 234.125 kb on - strand, within B158DRAFT_0229at 234.160 kb on - strand, within B158DRAFT_0229at 234.231 kb on - strand, within B158DRAFT_0229at 234.231 kb on - strand, within B158DRAFT_0229at 234.231 kb on - strand, within B158DRAFT_0229at 234.236 kb on - strand, within B158DRAFT_0229at 234.241 kb on - strand, within B158DRAFT_0229at 234.264 kb on - strand, within B158DRAFT_0229at 234.314 kb on + strand, within B158DRAFT_0229at 234.314 kb on + strand, within B158DRAFT_0229at 234.314 kb on + strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.322 kb on - strand, within B158DRAFT_0229at 234.327 kb on - strand, within B158DRAFT_0229at 234.345 kb on + strand, within B158DRAFT_0229at 234.345 kb on + strand, within B158DRAFT_0229at 234.357 kb on + strand, within B158DRAFT_0229at 234.357 kb on + strand, within B158DRAFT_0229at 234.357 kb on + strand, within B158DRAFT_0229

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.00390625 mg/ml
remove
231,649 + B158DRAFT_0227 0.34 +2.1
231,673 + B158DRAFT_0227 0.36 -4.3
231,704 + B158DRAFT_0227 0.38 -0.1
231,704 + B158DRAFT_0227 0.38 +0.3
231,730 + B158DRAFT_0227 0.40 -1.0
231,851 + B158DRAFT_0227 0.49 -2.3
231,908 + B158DRAFT_0227 0.53 -1.4
231,918 + B158DRAFT_0227 0.53 -4.1
231,957 + B158DRAFT_0227 0.56 -0.6
231,964 + B158DRAFT_0227 0.57 -1.2
231,964 + B158DRAFT_0227 0.57 -1.2
231,964 + B158DRAFT_0227 0.57 -0.7
231,964 + B158DRAFT_0227 0.57 +1.3
231,964 + B158DRAFT_0227 0.57 +0.9
231,964 + B158DRAFT_0227 0.57 -0.3
231,964 + B158DRAFT_0227 0.57 -3.5
231,964 + B158DRAFT_0227 0.57 -0.3
231,964 + B158DRAFT_0227 0.57 -2.8
232,067 + B158DRAFT_0227 0.64 +0.0
232,067 + B158DRAFT_0227 0.64 -0.8
232,067 + B158DRAFT_0227 0.64 -0.0
232,067 + B158DRAFT_0227 0.64 +1.2
232,322 + B158DRAFT_0227 0.82 +0.2
232,330 + B158DRAFT_0227 0.83 +1.7
232,426 + B158DRAFT_0227 0.90 +0.8
232,426 + B158DRAFT_0227 0.90 +0.3
232,452 + -2.7
233,474 + +0.2
233,474 + +0.4
233,474 + -0.3
233,474 + +0.8
233,474 + +0.9
233,474 + -0.2
233,474 + +0.1
233,474 + -0.2
233,482 - +0.1
233,482 - +0.8
233,482 - +1.5
233,482 - +0.0
233,482 - +0.8
233,482 - -0.5
233,511 - +0.7
233,531 + -0.5
233,531 + -3.7
233,531 + +0.4
233,531 + -1.8
233,531 + +0.4
233,531 + -3.5
233,531 + +1.3
233,531 + +1.6
233,531 + -0.7
233,531 + +1.2
233,536 + -0.3
233,536 + +1.8
233,539 - B158DRAFT_0229 0.10 +0.2
233,539 - B158DRAFT_0229 0.10 -0.3
233,539 - B158DRAFT_0229 0.10 -0.2
233,645 + B158DRAFT_0229 0.20 +0.0
233,672 + B158DRAFT_0229 0.22 -0.1
233,707 - B158DRAFT_0229 0.25 -0.6
233,778 - B158DRAFT_0229 0.32 -0.7
233,816 + B158DRAFT_0229 0.35 +0.8
233,816 + B158DRAFT_0229 0.35 +0.2
233,816 + B158DRAFT_0229 0.35 -0.2
233,849 + B158DRAFT_0229 0.38 +1.8
233,877 - B158DRAFT_0229 0.41 -0.8
233,893 + B158DRAFT_0229 0.42 -0.6
233,941 + B158DRAFT_0229 0.46 -0.1
233,941 + B158DRAFT_0229 0.46 +0.1
233,949 - B158DRAFT_0229 0.47 -5.4
233,961 + B158DRAFT_0229 0.48 -6.7
233,969 - B158DRAFT_0229 0.49 +0.3
234,070 + B158DRAFT_0229 0.58 -0.3
234,078 - B158DRAFT_0229 0.59 +0.1
234,125 - B158DRAFT_0229 0.63 -0.3
234,160 - B158DRAFT_0229 0.66 +0.5
234,231 - B158DRAFT_0229 0.73 +0.1
234,231 - B158DRAFT_0229 0.73 -1.1
234,231 - B158DRAFT_0229 0.73 +1.0
234,236 - B158DRAFT_0229 0.73 +0.9
234,241 - B158DRAFT_0229 0.74 +0.4
234,264 - B158DRAFT_0229 0.76 -4.7
234,314 + B158DRAFT_0229 0.80 -0.9
234,314 + B158DRAFT_0229 0.80 -0.9
234,314 + B158DRAFT_0229 0.80 +1.5
234,322 - B158DRAFT_0229 0.81 +2.2
234,322 - B158DRAFT_0229 0.81 +0.4
234,322 - B158DRAFT_0229 0.81 -0.0
234,322 - B158DRAFT_0229 0.81 -0.7
234,322 - B158DRAFT_0229 0.81 -0.5
234,322 - B158DRAFT_0229 0.81 -0.8
234,327 - B158DRAFT_0229 0.81 -0.5
234,345 + B158DRAFT_0229 0.83 -4.6
234,345 + B158DRAFT_0229 0.83 +0.1
234,357 + B158DRAFT_0229 0.84 +1.6
234,357 + B158DRAFT_0229 0.84 -0.6
234,357 + B158DRAFT_0229 0.84 -0.4

Or see this region's nucleotide sequence