Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1843

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1841 and B158DRAFT_1842 are separated by 10 nucleotidesB158DRAFT_1842 and B158DRAFT_1843 overlap by 8 nucleotidesB158DRAFT_1843 and B158DRAFT_1844 are separated by 143 nucleotides B158DRAFT_1841: B158DRAFT_1841 - hypothetical protein, at 1,939,688 to 1,940,557 _1841 B158DRAFT_1842: B158DRAFT_1842 - hypothetical protein, at 1,940,568 to 1,941,086 _1842 B158DRAFT_1843: B158DRAFT_1843 - RNA polymerase sigma factor, sigma-70 family, at 1,941,079 to 1,941,645 _1843 B158DRAFT_1844: B158DRAFT_1844 - hypothetical protein, at 1,941,789 to 1,942,373 _1844 Position (kb) 1941 1942Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1940.082 kb on - strand, within B158DRAFT_1841at 1940.082 kb on - strand, within B158DRAFT_1841at 1940.089 kb on - strand, within B158DRAFT_1841at 1940.122 kb on - strand, within B158DRAFT_1841at 1940.143 kb on - strand, within B158DRAFT_1841at 1940.143 kb on - strand, within B158DRAFT_1841at 1940.163 kb on - strand, within B158DRAFT_1841at 1940.193 kb on + strand, within B158DRAFT_1841at 1940.262 kb on - strand, within B158DRAFT_1841at 1940.326 kb on - strand, within B158DRAFT_1841at 1940.398 kb on + strand, within B158DRAFT_1841at 1940.398 kb on + strand, within B158DRAFT_1841at 1940.398 kb on + strand, within B158DRAFT_1841at 1940.398 kb on + strand, within B158DRAFT_1841at 1940.406 kb on - strand, within B158DRAFT_1841at 1940.517 kb on - strandat 1940.570 kb on + strandat 1940.668 kb on + strand, within B158DRAFT_1842at 1940.668 kb on + strand, within B158DRAFT_1842at 1940.676 kb on - strand, within B158DRAFT_1842at 1940.678 kb on + strand, within B158DRAFT_1842at 1940.723 kb on - strand, within B158DRAFT_1842at 1940.858 kb on - strand, within B158DRAFT_1842at 1940.992 kb on + strand, within B158DRAFT_1842at 1941.115 kb on + strandat 1941.180 kb on + strand, within B158DRAFT_1843at 1941.188 kb on - strand, within B158DRAFT_1843at 1941.310 kb on + strand, within B158DRAFT_1843at 1941.318 kb on - strand, within B158DRAFT_1843at 1941.320 kb on + strand, within B158DRAFT_1843at 1941.354 kb on + strand, within B158DRAFT_1843at 1941.454 kb on + strand, within B158DRAFT_1843at 1941.461 kb on - strand, within B158DRAFT_1843at 1941.463 kb on + strand, within B158DRAFT_1843at 1941.463 kb on + strand, within B158DRAFT_1843at 1941.463 kb on + strand, within B158DRAFT_1843at 1941.471 kb on - strand, within B158DRAFT_1843at 1941.486 kb on + strand, within B158DRAFT_1843at 1941.532 kb on + strand, within B158DRAFT_1843at 1941.594 kb on - strandat 1941.596 kb on + strandat 1941.693 kb on - strandat 1941.693 kb on - strandat 1941.731 kb on - strandat 1941.731 kb on - strandat 1941.774 kb on + strandat 1941.805 kb on + strandat 1941.813 kb on - strandat 1941.813 kb on - strandat 1941.813 kb on - strandat 1941.853 kb on + strand, within B158DRAFT_1844at 1941.853 kb on + strand, within B158DRAFT_1844at 1941.966 kb on + strand, within B158DRAFT_1844at 1941.966 kb on + strand, within B158DRAFT_1844at 1941.971 kb on + strand, within B158DRAFT_1844at 1941.974 kb on - strand, within B158DRAFT_1844at 1942.127 kb on + strand, within B158DRAFT_1844at 1942.158 kb on - strand, within B158DRAFT_1844at 1942.193 kb on - strand, within B158DRAFT_1844at 1942.201 kb on + strand, within B158DRAFT_1844at 1942.201 kb on + strand, within B158DRAFT_1844at 1942.209 kb on - strand, within B158DRAFT_1844at 1942.216 kb on + strand, within B158DRAFT_1844at 1942.216 kb on + strand, within B158DRAFT_1844at 1942.219 kb on - strand, within B158DRAFT_1844at 1942.223 kb on - strand, within B158DRAFT_1844at 1942.224 kb on - strand, within B158DRAFT_1844at 1942.284 kb on - strand, within B158DRAFT_1844at 1942.482 kb on + strandat 1942.571 kb on - strandat 1942.590 kb on - strandat 1942.596 kb on - strandat 1942.596 kb on - strandat 1942.596 kb on - strandat 1942.596 kb on - strandat 1942.624 kb on + strandat 1942.632 kb on + strandat 1942.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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1,940,082 - B158DRAFT_1841 0.45 -0.2
1,940,082 - B158DRAFT_1841 0.45 +0.6
1,940,089 - B158DRAFT_1841 0.46 +0.1
1,940,122 - B158DRAFT_1841 0.50 +0.6
1,940,143 - B158DRAFT_1841 0.52 -0.4
1,940,143 - B158DRAFT_1841 0.52 +1.1
1,940,163 - B158DRAFT_1841 0.55 +1.0
1,940,193 + B158DRAFT_1841 0.58 -0.8
1,940,262 - B158DRAFT_1841 0.66 +0.9
1,940,326 - B158DRAFT_1841 0.73 +1.0
1,940,398 + B158DRAFT_1841 0.82 +0.1
1,940,398 + B158DRAFT_1841 0.82 +1.9
1,940,398 + B158DRAFT_1841 0.82 +0.2
1,940,398 + B158DRAFT_1841 0.82 +0.0
1,940,406 - B158DRAFT_1841 0.83 -1.2
1,940,517 - +1.3
1,940,570 + -1.9
1,940,668 + B158DRAFT_1842 0.19 +2.4
1,940,668 + B158DRAFT_1842 0.19 +1.4
1,940,676 - B158DRAFT_1842 0.21 +0.7
1,940,678 + B158DRAFT_1842 0.21 +1.9
1,940,723 - B158DRAFT_1842 0.30 +2.4
1,940,858 - B158DRAFT_1842 0.56 +0.3
1,940,992 + B158DRAFT_1842 0.82 +1.7
1,941,115 + -0.5
1,941,180 + B158DRAFT_1843 0.18 -2.2
1,941,188 - B158DRAFT_1843 0.19 -2.0
1,941,310 + B158DRAFT_1843 0.41 -0.3
1,941,318 - B158DRAFT_1843 0.42 -0.9
1,941,320 + B158DRAFT_1843 0.43 -2.2
1,941,354 + B158DRAFT_1843 0.49 -0.1
1,941,454 + B158DRAFT_1843 0.66 -0.8
1,941,461 - B158DRAFT_1843 0.67 +0.6
1,941,463 + B158DRAFT_1843 0.68 -0.4
1,941,463 + B158DRAFT_1843 0.68 -0.3
1,941,463 + B158DRAFT_1843 0.68 -0.6
1,941,471 - B158DRAFT_1843 0.69 -1.2
1,941,486 + B158DRAFT_1843 0.72 -1.9
1,941,532 + B158DRAFT_1843 0.80 -0.9
1,941,594 - -1.9
1,941,596 + -0.0
1,941,693 - +0.8
1,941,693 - -1.9
1,941,731 - -0.1
1,941,731 - -0.6
1,941,774 + -0.3
1,941,805 + +0.6
1,941,813 - +0.0
1,941,813 - -1.6
1,941,813 - -0.0
1,941,853 + B158DRAFT_1844 0.11 -2.6
1,941,853 + B158DRAFT_1844 0.11 -0.0
1,941,966 + B158DRAFT_1844 0.30 -0.8
1,941,966 + B158DRAFT_1844 0.30 -0.9
1,941,971 + B158DRAFT_1844 0.31 -0.9
1,941,974 - B158DRAFT_1844 0.32 -2.9
1,942,127 + B158DRAFT_1844 0.58 -1.0
1,942,158 - B158DRAFT_1844 0.63 +0.2
1,942,193 - B158DRAFT_1844 0.69 -1.2
1,942,201 + B158DRAFT_1844 0.70 +1.3
1,942,201 + B158DRAFT_1844 0.70 -0.3
1,942,209 - B158DRAFT_1844 0.72 +1.2
1,942,216 + B158DRAFT_1844 0.73 -1.1
1,942,216 + B158DRAFT_1844 0.73 -1.8
1,942,219 - B158DRAFT_1844 0.74 -0.9
1,942,223 - B158DRAFT_1844 0.74 -1.4
1,942,224 - B158DRAFT_1844 0.74 -0.4
1,942,284 - B158DRAFT_1844 0.85 -2.7
1,942,482 + -0.3
1,942,571 - +0.7
1,942,590 - -1.0
1,942,596 - -0.1
1,942,596 - +1.1
1,942,596 - -0.6
1,942,596 - -0.1
1,942,624 + -0.8
1,942,632 + +0.6
1,942,637 + +0.6

Or see this region's nucleotide sequence