Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1841

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1839 and B158DRAFT_1840 are separated by 1 nucleotidesB158DRAFT_1840 and B158DRAFT_1841 are separated by 33 nucleotidesB158DRAFT_1841 and B158DRAFT_1842 are separated by 10 nucleotidesB158DRAFT_1842 and B158DRAFT_1843 overlap by 8 nucleotides B158DRAFT_1839: B158DRAFT_1839 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 1,937,935 to 1,939,038 _1839 B158DRAFT_1840: B158DRAFT_1840 - Uncharacterized protein involved in purine metabolism, at 1,939,040 to 1,939,654 _1840 B158DRAFT_1841: B158DRAFT_1841 - hypothetical protein, at 1,939,688 to 1,940,557 _1841 B158DRAFT_1842: B158DRAFT_1842 - hypothetical protein, at 1,940,568 to 1,941,086 _1842 B158DRAFT_1843: B158DRAFT_1843 - RNA polymerase sigma factor, sigma-70 family, at 1,941,079 to 1,941,645 _1843 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -2 -1 0 1 2at 1939.125 kb on - strand, within B158DRAFT_1840at 1939.350 kb on - strand, within B158DRAFT_1840at 1939.391 kb on - strand, within B158DRAFT_1840at 1939.403 kb on + strand, within B158DRAFT_1840at 1939.411 kb on - strand, within B158DRAFT_1840at 1939.412 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.568 kb on - strand, within B158DRAFT_1840at 1939.568 kb on - strand, within B158DRAFT_1840at 1939.694 kb on - strandat 1939.712 kb on - strandat 1939.770 kb on + strandat 1939.780 kb on + strand, within B158DRAFT_1841at 1939.865 kb on + strand, within B158DRAFT_1841at 1939.883 kb on - strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.897 kb on + strand, within B158DRAFT_1841at 1939.897 kb on + strand, within B158DRAFT_1841at 1939.899 kb on - strand, within B158DRAFT_1841at 1939.899 kb on - strand, within B158DRAFT_1841at 1939.899 kb on - strand, within B158DRAFT_1841at 1939.899 kb on - strand, within B158DRAFT_1841at 1939.901 kb on + strand, within B158DRAFT_1841at 1940.038 kb on + strand, within B158DRAFT_1841at 1940.052 kb on + strand, within B158DRAFT_1841at 1940.053 kb on - strand, within B158DRAFT_1841at 1940.074 kb on + strand, within B158DRAFT_1841at 1940.074 kb on + strand, within B158DRAFT_1841at 1940.082 kb on - strand, within B158DRAFT_1841at 1940.082 kb on - strand, within B158DRAFT_1841at 1940.089 kb on - strand, within B158DRAFT_1841at 1940.122 kb on - strand, within B158DRAFT_1841at 1940.143 kb on - strand, within B158DRAFT_1841at 1940.143 kb on - strand, within B158DRAFT_1841at 1940.163 kb on - strand, within B158DRAFT_1841at 1940.193 kb on + strand, within B158DRAFT_1841at 1940.262 kb on - strand, within B158DRAFT_1841at 1940.326 kb on - strand, within B158DRAFT_1841at 1940.398 kb on + strand, within B158DRAFT_1841at 1940.398 kb on + strand, within B158DRAFT_1841at 1940.398 kb on + strand, within B158DRAFT_1841at 1940.398 kb on + strand, within B158DRAFT_1841at 1940.406 kb on - strand, within B158DRAFT_1841at 1940.517 kb on - strandat 1940.570 kb on + strandat 1940.668 kb on + strand, within B158DRAFT_1842at 1940.668 kb on + strand, within B158DRAFT_1842at 1940.676 kb on - strand, within B158DRAFT_1842at 1940.678 kb on + strand, within B158DRAFT_1842at 1940.723 kb on - strand, within B158DRAFT_1842at 1940.858 kb on - strand, within B158DRAFT_1842at 1940.992 kb on + strand, within B158DRAFT_1842at 1941.115 kb on + strandat 1941.180 kb on + strand, within B158DRAFT_1843at 1941.188 kb on - strand, within B158DRAFT_1843at 1941.310 kb on + strand, within B158DRAFT_1843at 1941.318 kb on - strand, within B158DRAFT_1843at 1941.320 kb on + strand, within B158DRAFT_1843at 1941.354 kb on + strand, within B158DRAFT_1843at 1941.454 kb on + strand, within B158DRAFT_1843at 1941.461 kb on - strand, within B158DRAFT_1843at 1941.463 kb on + strand, within B158DRAFT_1843at 1941.463 kb on + strand, within B158DRAFT_1843at 1941.463 kb on + strand, within B158DRAFT_1843at 1941.471 kb on - strand, within B158DRAFT_1843at 1941.486 kb on + strand, within B158DRAFT_1843at 1941.532 kb on + strand, within B158DRAFT_1843

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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1,939,125 - B158DRAFT_1840 0.14 +1.2
1,939,350 - B158DRAFT_1840 0.50 +0.7
1,939,391 - B158DRAFT_1840 0.57 +0.4
1,939,403 + B158DRAFT_1840 0.59 -1.3
1,939,411 - B158DRAFT_1840 0.60 -0.4
1,939,412 - B158DRAFT_1840 0.60 -0.6
1,939,508 - B158DRAFT_1840 0.76 -1.7
1,939,508 - B158DRAFT_1840 0.76 -0.2
1,939,508 - B158DRAFT_1840 0.76 +1.6
1,939,508 - B158DRAFT_1840 0.76 +0.6
1,939,508 - B158DRAFT_1840 0.76 -2.4
1,939,508 - B158DRAFT_1840 0.76 +1.0
1,939,568 - B158DRAFT_1840 0.86 -1.9
1,939,568 - B158DRAFT_1840 0.86 +0.3
1,939,694 - +0.1
1,939,712 - +1.5
1,939,770 + -0.7
1,939,780 + B158DRAFT_1841 0.11 -0.1
1,939,865 + B158DRAFT_1841 0.20 +0.0
1,939,883 - B158DRAFT_1841 0.22 +0.2
1,939,891 + B158DRAFT_1841 0.23 -0.8
1,939,891 + B158DRAFT_1841 0.23 +0.3
1,939,891 + B158DRAFT_1841 0.23 -0.6
1,939,891 + B158DRAFT_1841 0.23 +0.7
1,939,891 + B158DRAFT_1841 0.23 -1.4
1,939,897 + B158DRAFT_1841 0.24 +1.0
1,939,897 + B158DRAFT_1841 0.24 -1.5
1,939,899 - B158DRAFT_1841 0.24 +2.4
1,939,899 - B158DRAFT_1841 0.24 +1.0
1,939,899 - B158DRAFT_1841 0.24 -1.0
1,939,899 - B158DRAFT_1841 0.24 -0.3
1,939,901 + B158DRAFT_1841 0.24 -0.9
1,940,038 + B158DRAFT_1841 0.40 -0.4
1,940,052 + B158DRAFT_1841 0.42 +1.9
1,940,053 - B158DRAFT_1841 0.42 +0.5
1,940,074 + B158DRAFT_1841 0.44 +0.3
1,940,074 + B158DRAFT_1841 0.44 +0.3
1,940,082 - B158DRAFT_1841 0.45 -0.2
1,940,082 - B158DRAFT_1841 0.45 +0.6
1,940,089 - B158DRAFT_1841 0.46 +0.1
1,940,122 - B158DRAFT_1841 0.50 +0.6
1,940,143 - B158DRAFT_1841 0.52 -0.4
1,940,143 - B158DRAFT_1841 0.52 +1.1
1,940,163 - B158DRAFT_1841 0.55 +1.0
1,940,193 + B158DRAFT_1841 0.58 -0.8
1,940,262 - B158DRAFT_1841 0.66 +0.9
1,940,326 - B158DRAFT_1841 0.73 +1.0
1,940,398 + B158DRAFT_1841 0.82 +0.1
1,940,398 + B158DRAFT_1841 0.82 +1.9
1,940,398 + B158DRAFT_1841 0.82 +0.2
1,940,398 + B158DRAFT_1841 0.82 +0.0
1,940,406 - B158DRAFT_1841 0.83 -1.2
1,940,517 - +1.3
1,940,570 + -1.9
1,940,668 + B158DRAFT_1842 0.19 +2.4
1,940,668 + B158DRAFT_1842 0.19 +1.4
1,940,676 - B158DRAFT_1842 0.21 +0.7
1,940,678 + B158DRAFT_1842 0.21 +1.9
1,940,723 - B158DRAFT_1842 0.30 +2.4
1,940,858 - B158DRAFT_1842 0.56 +0.3
1,940,992 + B158DRAFT_1842 0.82 +1.7
1,941,115 + -0.5
1,941,180 + B158DRAFT_1843 0.18 -2.2
1,941,188 - B158DRAFT_1843 0.19 -2.0
1,941,310 + B158DRAFT_1843 0.41 -0.3
1,941,318 - B158DRAFT_1843 0.42 -0.9
1,941,320 + B158DRAFT_1843 0.43 -2.2
1,941,354 + B158DRAFT_1843 0.49 -0.1
1,941,454 + B158DRAFT_1843 0.66 -0.8
1,941,461 - B158DRAFT_1843 0.67 +0.6
1,941,463 + B158DRAFT_1843 0.68 -0.4
1,941,463 + B158DRAFT_1843 0.68 -0.3
1,941,463 + B158DRAFT_1843 0.68 -0.6
1,941,471 - B158DRAFT_1843 0.69 -1.2
1,941,486 + B158DRAFT_1843 0.72 -1.9
1,941,532 + B158DRAFT_1843 0.80 -0.9

Or see this region's nucleotide sequence