Experiment: m.b. copper (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1811 and B158DRAFT_1812 are separated by 5 nucleotides B158DRAFT_1812 and B158DRAFT_1813 are separated by 35 nucleotides B158DRAFT_1813 and B158DRAFT_1814 are separated by 69 nucleotides
B158DRAFT_1811: B158DRAFT_1811 - arginine decarboxylase (EC 4.1.1.19), at 1,910,327 to 1,912,261
_1811
B158DRAFT_1812: B158DRAFT_1812 - Peptidylarginine deiminase and related enzymes, at 1,912,267 to 1,913,250
_1812
B158DRAFT_1813: B158DRAFT_1813 - N-carbamoylputrescine amidase, at 1,913,286 to 1,914,143
_1813
B158DRAFT_1814: B158DRAFT_1814 - Predicted enzyme related to lactoylglutathione lyase, at 1,914,213 to 1,914,590
_1814
Position (kb)
1912
1913
1914 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 1911.269 kb on + strand, within B158DRAFT_1811 at 1911.312 kb on - strand, within B158DRAFT_1811 at 1911.338 kb on + strand, within B158DRAFT_1811 at 1911.376 kb on + strand, within B158DRAFT_1811 at 1911.388 kb on + strand, within B158DRAFT_1811 at 1911.388 kb on + strand, within B158DRAFT_1811 at 1911.406 kb on - strand, within B158DRAFT_1811 at 1911.464 kb on + strand, within B158DRAFT_1811 at 1911.470 kb on + strand, within B158DRAFT_1811 at 1911.478 kb on - strand, within B158DRAFT_1811 at 1911.478 kb on - strand, within B158DRAFT_1811 at 1911.478 kb on - strand, within B158DRAFT_1811 at 1911.478 kb on - strand, within B158DRAFT_1811 at 1911.478 kb on - strand, within B158DRAFT_1811 at 1911.480 kb on + strand, within B158DRAFT_1811 at 1911.488 kb on - strand, within B158DRAFT_1811 at 1911.517 kb on - strand, within B158DRAFT_1811 at 1911.573 kb on + strand, within B158DRAFT_1811 at 1911.573 kb on + strand, within B158DRAFT_1811 at 1911.578 kb on + strand, within B158DRAFT_1811 at 1911.591 kb on - strand, within B158DRAFT_1811 at 1911.602 kb on + strand, within B158DRAFT_1811 at 1911.602 kb on + strand, within B158DRAFT_1811 at 1911.604 kb on - strand, within B158DRAFT_1811 at 1911.622 kb on + strand, within B158DRAFT_1811 at 1911.622 kb on + strand, within B158DRAFT_1811 at 1911.622 kb on + strand, within B158DRAFT_1811 at 1911.622 kb on + strand, within B158DRAFT_1811 at 1911.630 kb on - strand, within B158DRAFT_1811 at 1911.668 kb on - strand, within B158DRAFT_1811 at 1911.703 kb on - strand, within B158DRAFT_1811 at 1911.742 kb on - strand, within B158DRAFT_1811 at 1911.770 kb on + strand, within B158DRAFT_1811 at 1911.770 kb on + strand, within B158DRAFT_1811 at 1911.778 kb on + strand, within B158DRAFT_1811 at 1911.796 kb on + strand, within B158DRAFT_1811 at 1911.825 kb on - strand, within B158DRAFT_1811 at 1911.828 kb on + strand, within B158DRAFT_1811 at 1911.913 kb on - strand, within B158DRAFT_1811 at 1911.940 kb on + strand, within B158DRAFT_1811 at 1911.940 kb on + strand, within B158DRAFT_1811 at 1911.940 kb on + strand, within B158DRAFT_1811 at 1911.948 kb on - strand, within B158DRAFT_1811 at 1911.948 kb on - strand, within B158DRAFT_1811 at 1911.948 kb on - strand, within B158DRAFT_1811 at 1911.948 kb on - strand, within B158DRAFT_1811 at 1911.948 kb on - strand, within B158DRAFT_1811 at 1911.948 kb on - strand, within B158DRAFT_1811 at 1911.948 kb on - strand, within B158DRAFT_1811 at 1911.988 kb on - strand, within B158DRAFT_1811 at 1912.010 kb on + strand, within B158DRAFT_1811 at 1912.082 kb on + strand at 1912.095 kb on + strand at 1912.112 kb on + strand at 1912.182 kb on + strand at 1912.182 kb on + strand at 1912.190 kb on - strand at 1912.190 kb on - strand at 1912.190 kb on - strand at 1912.196 kb on + strand at 1912.202 kb on + strand at 1912.204 kb on - strand at 1912.204 kb on - strand at 1912.210 kb on - strand at 1912.263 kb on - strand at 1912.279 kb on + strand at 1912.279 kb on + strand at 1912.317 kb on - strand at 1912.318 kb on + strand at 1912.395 kb on + strand, within B158DRAFT_1812 at 1912.403 kb on - strand, within B158DRAFT_1812 at 1912.403 kb on - strand, within B158DRAFT_1812 at 1912.442 kb on - strand, within B158DRAFT_1812 at 1912.491 kb on + strand, within B158DRAFT_1812 at 1912.499 kb on - strand, within B158DRAFT_1812 at 1912.499 kb on - strand, within B158DRAFT_1812 at 1912.560 kb on + strand, within B158DRAFT_1812 at 1912.560 kb on + strand, within B158DRAFT_1812 at 1912.568 kb on - strand, within B158DRAFT_1812 at 1912.613 kb on + strand, within B158DRAFT_1812 at 1912.650 kb on + strand, within B158DRAFT_1812 at 1912.672 kb on - strand, within B158DRAFT_1812 at 1912.728 kb on - strand, within B158DRAFT_1812 at 1912.780 kb on - strand, within B158DRAFT_1812 at 1912.810 kb on - strand, within B158DRAFT_1812 at 1912.839 kb on + strand, within B158DRAFT_1812 at 1912.869 kb on - strand, within B158DRAFT_1812 at 1912.884 kb on - strand, within B158DRAFT_1812 at 1912.917 kb on - strand, within B158DRAFT_1812 at 1912.971 kb on - strand, within B158DRAFT_1812 at 1913.046 kb on + strand, within B158DRAFT_1812 at 1913.161 kb on + strand at 1913.173 kb on + strand at 1913.220 kb on + strand at 1913.345 kb on - strand at 1913.355 kb on + strand at 1913.369 kb on - strand at 1913.377 kb on + strand, within B158DRAFT_1813 at 1913.383 kb on - strand, within B158DRAFT_1813 at 1913.405 kb on + strand, within B158DRAFT_1813 at 1913.425 kb on - strand, within B158DRAFT_1813 at 1913.432 kb on - strand, within B158DRAFT_1813 at 1913.496 kb on + strand, within B158DRAFT_1813 at 1913.504 kb on - strand, within B158DRAFT_1813 at 1913.512 kb on - strand, within B158DRAFT_1813 at 1913.515 kb on + strand, within B158DRAFT_1813 at 1913.523 kb on - strand, within B158DRAFT_1813 at 1913.533 kb on - strand, within B158DRAFT_1813 at 1913.576 kb on + strand, within B158DRAFT_1813 at 1913.582 kb on - strand, within B158DRAFT_1813 at 1913.584 kb on - strand, within B158DRAFT_1813 at 1913.584 kb on - strand, within B158DRAFT_1813 at 1913.594 kb on + strand, within B158DRAFT_1813 at 1913.596 kb on - strand, within B158DRAFT_1813 at 1913.604 kb on + strand, within B158DRAFT_1813 at 1913.695 kb on + strand, within B158DRAFT_1813 at 1913.695 kb on + strand, within B158DRAFT_1813 at 1913.695 kb on + strand, within B158DRAFT_1813 at 1913.703 kb on + strand, within B158DRAFT_1813 at 1913.703 kb on - strand, within B158DRAFT_1813 at 1913.703 kb on - strand, within B158DRAFT_1813 at 1913.711 kb on - strand, within B158DRAFT_1813 at 1913.734 kb on - strand, within B158DRAFT_1813 at 1913.748 kb on + strand, within B158DRAFT_1813 at 1913.748 kb on + strand, within B158DRAFT_1813 at 1913.748 kb on + strand, within B158DRAFT_1813 at 1913.748 kb on + strand, within B158DRAFT_1813 at 1913.756 kb on - strand, within B158DRAFT_1813 at 1913.756 kb on - strand, within B158DRAFT_1813 at 1913.756 kb on - strand, within B158DRAFT_1813 at 1913.756 kb on - strand, within B158DRAFT_1813 at 1913.756 kb on - strand, within B158DRAFT_1813 at 1913.756 kb on - strand, within B158DRAFT_1813 at 1913.791 kb on + strand, within B158DRAFT_1813 at 1913.791 kb on + strand, within B158DRAFT_1813 at 1913.791 kb on + strand, within B158DRAFT_1813 at 1913.791 kb on + strand, within B158DRAFT_1813 at 1913.791 kb on - strand, within B158DRAFT_1813 at 1913.799 kb on - strand, within B158DRAFT_1813 at 1913.799 kb on - strand, within B158DRAFT_1813 at 1913.799 kb on - strand, within B158DRAFT_1813 at 1913.799 kb on - strand, within B158DRAFT_1813 at 1913.824 kb on + strand, within B158DRAFT_1813 at 1913.824 kb on + strand, within B158DRAFT_1813 at 1913.824 kb on + strand, within B158DRAFT_1813 at 1913.832 kb on - strand, within B158DRAFT_1813 at 1913.832 kb on - strand, within B158DRAFT_1813 at 1913.832 kb on - strand, within B158DRAFT_1813 at 1913.837 kb on - strand, within B158DRAFT_1813 at 1913.846 kb on - strand, within B158DRAFT_1813 at 1913.854 kb on + strand, within B158DRAFT_1813 at 1913.856 kb on + strand, within B158DRAFT_1813 at 1913.864 kb on - strand, within B158DRAFT_1813 at 1913.877 kb on + strand, within B158DRAFT_1813 at 1913.883 kb on + strand, within B158DRAFT_1813 at 1913.885 kb on - strand, within B158DRAFT_1813 at 1913.891 kb on - strand, within B158DRAFT_1813 at 1913.932 kb on + strand, within B158DRAFT_1813 at 1913.937 kb on + strand, within B158DRAFT_1813 at 1913.940 kb on - strand, within B158DRAFT_1813 at 1913.940 kb on - strand, within B158DRAFT_1813 at 1913.940 kb on - strand, within B158DRAFT_1813 at 1914.014 kb on - strand, within B158DRAFT_1813 at 1914.034 kb on + strand, within B158DRAFT_1813 at 1914.041 kb on - strand, within B158DRAFT_1813 at 1914.051 kb on - strand, within B158DRAFT_1813 at 1914.095 kb on + strand at 1914.095 kb on + strand at 1914.095 kb on + strand at 1914.095 kb on + strand at 1914.103 kb on - strand at 1914.103 kb on - strand at 1914.103 kb on - strand at 1914.103 kb on - strand at 1914.103 kb on - strand at 1914.104 kb on + strand at 1914.123 kb on - strand at 1914.127 kb on + strand at 1914.135 kb on - strand at 1914.188 kb on - strand at 1914.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM remove 1,911,269 + B158DRAFT_1811 0.49 +0.3 1,911,312 - B158DRAFT_1811 0.51 -0.9 1,911,338 + B158DRAFT_1811 0.52 -0.2 1,911,376 + B158DRAFT_1811 0.54 +0.1 1,911,388 + B158DRAFT_1811 0.55 -1.4 1,911,388 + B158DRAFT_1811 0.55 +0.3 1,911,406 - B158DRAFT_1811 0.56 -0.8 1,911,464 + B158DRAFT_1811 0.59 +1.6 1,911,470 + B158DRAFT_1811 0.59 -2.4 1,911,478 - B158DRAFT_1811 0.59 +1.0 1,911,478 - B158DRAFT_1811 0.59 -2.1 1,911,478 - B158DRAFT_1811 0.59 +0.3 1,911,478 - B158DRAFT_1811 0.59 -1.7 1,911,478 - B158DRAFT_1811 0.59 +0.2 1,911,480 + B158DRAFT_1811 0.60 -1.3 1,911,488 - B158DRAFT_1811 0.60 -1.3 1,911,517 - B158DRAFT_1811 0.61 -0.8 1,911,573 + B158DRAFT_1811 0.64 -0.8 1,911,573 + B158DRAFT_1811 0.64 +0.0 1,911,578 + B158DRAFT_1811 0.65 -0.9 1,911,591 - B158DRAFT_1811 0.65 -0.6 1,911,602 + B158DRAFT_1811 0.66 -1.7 1,911,602 + B158DRAFT_1811 0.66 +0.0 1,911,604 - B158DRAFT_1811 0.66 +1.2 1,911,622 + B158DRAFT_1811 0.67 +0.1 1,911,622 + B158DRAFT_1811 0.67 -1.2 1,911,622 + B158DRAFT_1811 0.67 -0.7 1,911,622 + B158DRAFT_1811 0.67 -0.2 1,911,630 - B158DRAFT_1811 0.67 +0.2 1,911,668 - B158DRAFT_1811 0.69 -0.4 1,911,703 - B158DRAFT_1811 0.71 +0.4 1,911,742 - B158DRAFT_1811 0.73 +0.2 1,911,770 + B158DRAFT_1811 0.75 -0.7 1,911,770 + B158DRAFT_1811 0.75 +0.1 1,911,778 + B158DRAFT_1811 0.75 -0.7 1,911,796 + B158DRAFT_1811 0.76 -0.7 1,911,825 - B158DRAFT_1811 0.77 -0.2 1,911,828 + B158DRAFT_1811 0.78 -1.1 1,911,913 - B158DRAFT_1811 0.82 -0.5 1,911,940 + B158DRAFT_1811 0.83 +0.2 1,911,940 + B158DRAFT_1811 0.83 -1.0 1,911,940 + B158DRAFT_1811 0.83 +0.6 1,911,948 - B158DRAFT_1811 0.84 -0.6 1,911,948 - B158DRAFT_1811 0.84 +7.2 1,911,948 - B158DRAFT_1811 0.84 +0.1 1,911,948 - B158DRAFT_1811 0.84 -1.2 1,911,948 - B158DRAFT_1811 0.84 -1.0 1,911,948 - B158DRAFT_1811 0.84 -1.0 1,911,948 - B158DRAFT_1811 0.84 -1.3 1,911,988 - B158DRAFT_1811 0.86 -1.5 1,912,010 + B158DRAFT_1811 0.87 +0.9 1,912,082 + +0.7 1,912,095 + -2.1 1,912,112 + -0.3 1,912,182 + -2.9 1,912,182 + -0.1 1,912,190 - +0.3 1,912,190 - +0.4 1,912,190 - -0.8 1,912,196 + -0.7 1,912,202 + +0.7 1,912,204 - -1.1 1,912,204 - -1.2 1,912,210 - -1.1 1,912,263 - +0.8 1,912,279 + -1.8 1,912,279 + -0.7 1,912,317 - +1.1 1,912,318 + -0.3 1,912,395 + B158DRAFT_1812 0.13 +0.1 1,912,403 - B158DRAFT_1812 0.14 -1.1 1,912,403 - B158DRAFT_1812 0.14 +0.5 1,912,442 - B158DRAFT_1812 0.18 -1.3 1,912,491 + B158DRAFT_1812 0.23 +0.1 1,912,499 - B158DRAFT_1812 0.24 -0.5 1,912,499 - B158DRAFT_1812 0.24 -1.2 1,912,560 + B158DRAFT_1812 0.30 +2.0 1,912,560 + B158DRAFT_1812 0.30 -0.7 1,912,568 - B158DRAFT_1812 0.31 -0.8 1,912,613 + B158DRAFT_1812 0.35 -0.0 1,912,650 + B158DRAFT_1812 0.39 +0.4 1,912,672 - B158DRAFT_1812 0.41 +0.1 1,912,728 - B158DRAFT_1812 0.47 -2.9 1,912,780 - B158DRAFT_1812 0.52 -0.3 1,912,810 - B158DRAFT_1812 0.55 +1.1 1,912,839 + B158DRAFT_1812 0.58 -0.7 1,912,869 - B158DRAFT_1812 0.61 -0.4 1,912,884 - B158DRAFT_1812 0.63 -2.1 1,912,917 - B158DRAFT_1812 0.66 +1.3 1,912,971 - B158DRAFT_1812 0.72 -0.3 1,913,046 + B158DRAFT_1812 0.79 -0.8 1,913,161 + -1.9 1,913,173 + -0.9 1,913,220 + +1.0 1,913,345 - -2.9 1,913,355 + -0.9 1,913,369 - +0.3 1,913,377 + B158DRAFT_1813 0.11 -0.6 1,913,383 - B158DRAFT_1813 0.11 -0.1 1,913,405 + B158DRAFT_1813 0.14 -0.3 1,913,425 - B158DRAFT_1813 0.16 -1.0 1,913,432 - B158DRAFT_1813 0.17 -0.6 1,913,496 + B158DRAFT_1813 0.24 +1.1 1,913,504 - B158DRAFT_1813 0.25 -1.1 1,913,512 - B158DRAFT_1813 0.26 +0.3 1,913,515 + B158DRAFT_1813 0.27 -1.5 1,913,523 - B158DRAFT_1813 0.28 -1.0 1,913,533 - B158DRAFT_1813 0.29 +4.7 1,913,576 + B158DRAFT_1813 0.34 -0.6 1,913,582 - B158DRAFT_1813 0.34 +0.1 1,913,584 - B158DRAFT_1813 0.35 -1.4 1,913,584 - B158DRAFT_1813 0.35 -0.3 1,913,594 + B158DRAFT_1813 0.36 -0.7 1,913,596 - B158DRAFT_1813 0.36 -0.2 1,913,604 + B158DRAFT_1813 0.37 -1.1 1,913,695 + B158DRAFT_1813 0.48 +0.0 1,913,695 + B158DRAFT_1813 0.48 +0.1 1,913,695 + B158DRAFT_1813 0.48 +3.7 1,913,703 + B158DRAFT_1813 0.49 -0.4 1,913,703 - B158DRAFT_1813 0.49 -1.5 1,913,703 - B158DRAFT_1813 0.49 -0.2 1,913,711 - B158DRAFT_1813 0.50 +1.4 1,913,734 - B158DRAFT_1813 0.52 -0.3 1,913,748 + B158DRAFT_1813 0.54 -1.2 1,913,748 + B158DRAFT_1813 0.54 +1.4 1,913,748 + B158DRAFT_1813 0.54 -0.7 1,913,748 + B158DRAFT_1813 0.54 -0.6 1,913,756 - B158DRAFT_1813 0.55 -0.0 1,913,756 - B158DRAFT_1813 0.55 -1.0 1,913,756 - B158DRAFT_1813 0.55 -0.4 1,913,756 - B158DRAFT_1813 0.55 +0.1 1,913,756 - B158DRAFT_1813 0.55 +0.2 1,913,756 - B158DRAFT_1813 0.55 +0.2 1,913,791 + B158DRAFT_1813 0.59 +1.3 1,913,791 + B158DRAFT_1813 0.59 +0.8 1,913,791 + B158DRAFT_1813 0.59 -0.2 1,913,791 + B158DRAFT_1813 0.59 +0.2 1,913,791 - B158DRAFT_1813 0.59 -0.0 1,913,799 - B158DRAFT_1813 0.60 -1.3 1,913,799 - B158DRAFT_1813 0.60 -0.1 1,913,799 - B158DRAFT_1813 0.60 -1.2 1,913,799 - B158DRAFT_1813 0.60 +0.4 1,913,824 + B158DRAFT_1813 0.63 +3.1 1,913,824 + B158DRAFT_1813 0.63 -1.4 1,913,824 + B158DRAFT_1813 0.63 -1.1 1,913,832 - B158DRAFT_1813 0.64 -0.4 1,913,832 - B158DRAFT_1813 0.64 +0.1 1,913,832 - B158DRAFT_1813 0.64 +0.8 1,913,837 - B158DRAFT_1813 0.64 -0.4 1,913,846 - B158DRAFT_1813 0.65 -1.0 1,913,854 + B158DRAFT_1813 0.66 +0.6 1,913,856 + B158DRAFT_1813 0.66 +0.3 1,913,864 - B158DRAFT_1813 0.67 +0.4 1,913,877 + B158DRAFT_1813 0.69 -1.9 1,913,883 + B158DRAFT_1813 0.70 -1.7 1,913,885 - B158DRAFT_1813 0.70 -0.8 1,913,891 - B158DRAFT_1813 0.71 +0.3 1,913,932 + B158DRAFT_1813 0.75 -0.3 1,913,937 + B158DRAFT_1813 0.76 -1.1 1,913,940 - B158DRAFT_1813 0.76 -1.2 1,913,940 - B158DRAFT_1813 0.76 -0.6 1,913,940 - B158DRAFT_1813 0.76 +1.0 1,914,014 - B158DRAFT_1813 0.85 -2.8 1,914,034 + B158DRAFT_1813 0.87 -1.1 1,914,041 - B158DRAFT_1813 0.88 -1.3 1,914,051 - B158DRAFT_1813 0.89 -0.7 1,914,095 + +1.2 1,914,095 + -0.1 1,914,095 + -0.2 1,914,095 + -0.7 1,914,103 - -2.0 1,914,103 - -0.6 1,914,103 - +0.7 1,914,103 - +0.4 1,914,103 - +4.5 1,914,104 + -0.4 1,914,123 - -1.1 1,914,127 + -1.0 1,914,135 - -1.4 1,914,188 - -0.4 1,914,203 - -1.4
Or see this region's nucleotide sequence