Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1738

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1736 and B158DRAFT_1737 are separated by 0 nucleotidesB158DRAFT_1737 and B158DRAFT_1738 overlap by 4 nucleotidesB158DRAFT_1738 and B158DRAFT_1739 overlap by 8 nucleotides B158DRAFT_1736: B158DRAFT_1736 - hypothetical protein, at 1,814,325 to 1,814,726 _1736 B158DRAFT_1737: B158DRAFT_1737 - two component transcriptional regulator, LuxR family, at 1,814,727 to 1,815,365 _1737 B158DRAFT_1738: B158DRAFT_1738 - Histidine kinase/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 1,815,362 to 1,816,105 _1738 B158DRAFT_1739: B158DRAFT_1739 - Protein kinase domain., at 1,816,098 to 1,819,463 _1739 Position (kb) 1815 1816 1817Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1814.425 kb on + strand, within B158DRAFT_1736at 1814.433 kb on + strand, within B158DRAFT_1736at 1814.497 kb on + strand, within B158DRAFT_1736at 1814.568 kb on + strand, within B158DRAFT_1736at 1814.576 kb on - strand, within B158DRAFT_1736at 1814.658 kb on + strand, within B158DRAFT_1736at 1814.773 kb on + strandat 1814.909 kb on + strand, within B158DRAFT_1737at 1814.995 kb on - strand, within B158DRAFT_1737at 1814.999 kb on - strand, within B158DRAFT_1737at 1815.181 kb on + strand, within B158DRAFT_1737at 1815.204 kb on + strand, within B158DRAFT_1737at 1815.252 kb on + strand, within B158DRAFT_1737at 1815.283 kb on - strand, within B158DRAFT_1737at 1815.312 kb on + strandat 1815.312 kb on + strandat 1815.350 kb on + strandat 1815.384 kb on + strandat 1815.384 kb on + strandat 1815.385 kb on - strandat 1815.392 kb on - strandat 1815.419 kb on + strandat 1815.419 kb on + strandat 1815.427 kb on - strandat 1815.427 kb on - strandat 1815.427 kb on - strandat 1815.427 kb on - strandat 1815.427 kb on - strandat 1815.430 kb on + strandat 1815.430 kb on + strandat 1815.437 kb on - strand, within B158DRAFT_1738at 1815.455 kb on + strand, within B158DRAFT_1738at 1815.490 kb on + strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.498 kb on - strand, within B158DRAFT_1738at 1815.516 kb on - strand, within B158DRAFT_1738at 1815.523 kb on + strand, within B158DRAFT_1738at 1815.524 kb on + strand, within B158DRAFT_1738at 1815.537 kb on + strand, within B158DRAFT_1738at 1815.537 kb on + strand, within B158DRAFT_1738at 1815.545 kb on - strand, within B158DRAFT_1738at 1815.545 kb on - strand, within B158DRAFT_1738at 1815.581 kb on - strand, within B158DRAFT_1738at 1815.648 kb on + strand, within B158DRAFT_1738at 1815.703 kb on + strand, within B158DRAFT_1738at 1815.839 kb on - strand, within B158DRAFT_1738at 1815.851 kb on - strand, within B158DRAFT_1738at 1815.851 kb on - strand, within B158DRAFT_1738at 1815.867 kb on + strand, within B158DRAFT_1738at 1815.875 kb on - strand, within B158DRAFT_1738at 1815.926 kb on - strand, within B158DRAFT_1738at 1815.926 kb on - strand, within B158DRAFT_1738at 1815.936 kb on + strand, within B158DRAFT_1738at 1815.946 kb on - strand, within B158DRAFT_1738at 1815.992 kb on - strand, within B158DRAFT_1738at 1816.111 kb on + strandat 1816.353 kb on + strandat 1816.360 kb on - strandat 1816.509 kb on - strand, within B158DRAFT_1739at 1816.648 kb on - strand, within B158DRAFT_1739at 1816.700 kb on - strand, within B158DRAFT_1739at 1816.719 kb on - strand, within B158DRAFT_1739at 1816.895 kb on + strand, within B158DRAFT_1739at 1816.898 kb on + strand, within B158DRAFT_1739at 1816.898 kb on + strand, within B158DRAFT_1739at 1816.906 kb on - strand, within B158DRAFT_1739at 1816.906 kb on - strand, within B158DRAFT_1739at 1816.939 kb on - strand, within B158DRAFT_1739at 1817.067 kb on + strand, within B158DRAFT_1739at 1817.090 kb on + strand, within B158DRAFT_1739

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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1,814,425 + B158DRAFT_1736 0.25 -0.9
1,814,433 + B158DRAFT_1736 0.27 -1.3
1,814,497 + B158DRAFT_1736 0.43 -0.4
1,814,568 + B158DRAFT_1736 0.60 +0.2
1,814,576 - B158DRAFT_1736 0.62 -0.7
1,814,658 + B158DRAFT_1736 0.83 -0.4
1,814,773 + +1.6
1,814,909 + B158DRAFT_1737 0.28 +1.7
1,814,995 - B158DRAFT_1737 0.42 +1.1
1,814,999 - B158DRAFT_1737 0.43 +0.8
1,815,181 + B158DRAFT_1737 0.71 -1.8
1,815,204 + B158DRAFT_1737 0.75 +0.7
1,815,252 + B158DRAFT_1737 0.82 -0.4
1,815,283 - B158DRAFT_1737 0.87 -0.8
1,815,312 + -1.1
1,815,312 + -1.2
1,815,350 + -0.3
1,815,384 + -1.3
1,815,384 + -1.2
1,815,385 - +1.0
1,815,392 - -0.2
1,815,419 + -1.4
1,815,419 + -0.6
1,815,427 - -2.2
1,815,427 - -0.3
1,815,427 - -1.5
1,815,427 - -0.8
1,815,427 - -0.6
1,815,430 + +0.9
1,815,430 + +0.7
1,815,437 - B158DRAFT_1738 0.10 +1.1
1,815,455 + B158DRAFT_1738 0.12 -1.6
1,815,490 + B158DRAFT_1738 0.17 -1.4
1,815,498 - B158DRAFT_1738 0.18 -0.9
1,815,498 - B158DRAFT_1738 0.18 -0.1
1,815,498 - B158DRAFT_1738 0.18 +0.5
1,815,498 - B158DRAFT_1738 0.18 -1.8
1,815,498 - B158DRAFT_1738 0.18 -0.8
1,815,516 - B158DRAFT_1738 0.21 -0.5
1,815,523 + B158DRAFT_1738 0.22 -1.2
1,815,524 + B158DRAFT_1738 0.22 -1.8
1,815,537 + B158DRAFT_1738 0.24 -2.8
1,815,537 + B158DRAFT_1738 0.24 -0.3
1,815,545 - B158DRAFT_1738 0.25 +1.6
1,815,545 - B158DRAFT_1738 0.25 -0.7
1,815,581 - B158DRAFT_1738 0.29 -0.7
1,815,648 + B158DRAFT_1738 0.38 -1.4
1,815,703 + B158DRAFT_1738 0.46 -0.5
1,815,839 - B158DRAFT_1738 0.64 -0.7
1,815,851 - B158DRAFT_1738 0.66 -0.9
1,815,851 - B158DRAFT_1738 0.66 +0.1
1,815,867 + B158DRAFT_1738 0.68 -1.6
1,815,875 - B158DRAFT_1738 0.69 -0.7
1,815,926 - B158DRAFT_1738 0.76 -0.3
1,815,926 - B158DRAFT_1738 0.76 +0.1
1,815,936 + B158DRAFT_1738 0.77 -0.6
1,815,946 - B158DRAFT_1738 0.78 -0.6
1,815,992 - B158DRAFT_1738 0.85 -1.3
1,816,111 + +2.4
1,816,353 + -1.0
1,816,360 - -0.3
1,816,509 - B158DRAFT_1739 0.12 -0.7
1,816,648 - B158DRAFT_1739 0.16 +1.3
1,816,700 - B158DRAFT_1739 0.18 -3.1
1,816,719 - B158DRAFT_1739 0.18 -0.3
1,816,895 + B158DRAFT_1739 0.24 +0.4
1,816,898 + B158DRAFT_1739 0.24 -2.0
1,816,898 + B158DRAFT_1739 0.24 -2.2
1,816,906 - B158DRAFT_1739 0.24 -0.7
1,816,906 - B158DRAFT_1739 0.24 -0.2
1,816,939 - B158DRAFT_1739 0.25 -0.0
1,817,067 + B158DRAFT_1739 0.29 +0.5
1,817,090 + B158DRAFT_1739 0.29 -0.4

Or see this region's nucleotide sequence