Experiment: m.b. copper (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1650 and B158DRAFT_1651 are separated by 349 nucleotides B158DRAFT_1651 and B158DRAFT_1652 are separated by 54 nucleotides B158DRAFT_1652 and B158DRAFT_1653 are separated by 67 nucleotides
B158DRAFT_1650: B158DRAFT_1650 - hypothetical protein, at 1,720,370 to 1,721,539
_1650
B158DRAFT_1651: B158DRAFT_1651 - hypothetical protein, at 1,721,889 to 1,722,797
_1651
B158DRAFT_1652: B158DRAFT_1652 - hypothetical protein, at 1,722,852 to 1,723,364
_1652
B158DRAFT_1653: B158DRAFT_1653 - Site-specific recombinase XerD, at 1,723,432 to 1,724,169
_1653
Position (kb)
1721
1722
1723 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1720.890 kb on - strand, within B158DRAFT_1650 at 1720.996 kb on + strand, within B158DRAFT_1650 at 1721.110 kb on + strand, within B158DRAFT_1650 at 1721.118 kb on - strand, within B158DRAFT_1650 at 1721.181 kb on + strand, within B158DRAFT_1650 at 1721.181 kb on + strand, within B158DRAFT_1650 at 1721.181 kb on + strand, within B158DRAFT_1650 at 1721.181 kb on + strand, within B158DRAFT_1650 at 1721.189 kb on - strand, within B158DRAFT_1650 at 1721.189 kb on - strand, within B158DRAFT_1650 at 1721.189 kb on - strand, within B158DRAFT_1650 at 1721.189 kb on - strand, within B158DRAFT_1650 at 1721.189 kb on - strand, within B158DRAFT_1650 at 1721.189 kb on - strand, within B158DRAFT_1650 at 1721.217 kb on - strand, within B158DRAFT_1650 at 1721.228 kb on - strand, within B158DRAFT_1650 at 1721.280 kb on - strand, within B158DRAFT_1650 at 1721.343 kb on + strand, within B158DRAFT_1650 at 1721.406 kb on + strand, within B158DRAFT_1650 at 1721.406 kb on - strand, within B158DRAFT_1650 at 1721.580 kb on + strand at 1721.599 kb on + strand at 1721.611 kb on + strand at 1721.613 kb on + strand at 1721.705 kb on + strand at 1721.705 kb on + strand at 1721.723 kb on - strand at 1721.945 kb on - strand at 1722.003 kb on + strand, within B158DRAFT_1651 at 1722.003 kb on + strand, within B158DRAFT_1651 at 1722.008 kb on + strand, within B158DRAFT_1651 at 1722.011 kb on - strand, within B158DRAFT_1651 at 1722.018 kb on + strand, within B158DRAFT_1651 at 1722.046 kb on + strand, within B158DRAFT_1651 at 1722.075 kb on + strand, within B158DRAFT_1651 at 1722.187 kb on - strand, within B158DRAFT_1651 at 1722.188 kb on - strand, within B158DRAFT_1651 at 1722.250 kb on - strand, within B158DRAFT_1651 at 1722.488 kb on + strand, within B158DRAFT_1651 at 1722.559 kb on - strand, within B158DRAFT_1651 at 1722.570 kb on - strand, within B158DRAFT_1651 at 1722.620 kb on + strand, within B158DRAFT_1651 at 1722.630 kb on + strand, within B158DRAFT_1651 at 1722.638 kb on - strand, within B158DRAFT_1651 at 1722.760 kb on - strand at 1722.760 kb on - strand at 1722.762 kb on + strand at 1722.770 kb on - strand at 1722.792 kb on + strand at 1722.802 kb on + strand at 1722.802 kb on + strand at 1722.812 kb on - strand at 1722.836 kb on + strand at 1722.844 kb on - strand at 1722.854 kb on + strand at 1722.862 kb on - strand at 1722.872 kb on + strand at 1722.882 kb on + strand at 1722.890 kb on - strand at 1722.914 kb on + strand, within B158DRAFT_1652 at 1722.940 kb on + strand, within B158DRAFT_1652 at 1722.941 kb on - strand, within B158DRAFT_1652 at 1722.964 kb on + strand, within B158DRAFT_1652 at 1723.025 kb on + strand, within B158DRAFT_1652 at 1723.033 kb on - strand, within B158DRAFT_1652 at 1723.037 kb on + strand, within B158DRAFT_1652 at 1723.038 kb on + strand, within B158DRAFT_1652 at 1723.038 kb on - strand, within B158DRAFT_1652 at 1723.165 kb on - strand, within B158DRAFT_1652 at 1723.212 kb on + strand, within B158DRAFT_1652 at 1723.212 kb on + strand, within B158DRAFT_1652 at 1723.212 kb on + strand, within B158DRAFT_1652 at 1723.220 kb on - strand, within B158DRAFT_1652 at 1723.220 kb on - strand, within B158DRAFT_1652 at 1723.220 kb on - strand, within B158DRAFT_1652 at 1723.220 kb on - strand, within B158DRAFT_1652 at 1723.220 kb on - strand, within B158DRAFT_1652 at 1723.220 kb on - strand, within B158DRAFT_1652 at 1723.227 kb on + strand, within B158DRAFT_1652 at 1723.227 kb on + strand, within B158DRAFT_1652 at 1723.235 kb on - strand, within B158DRAFT_1652 at 1723.235 kb on - strand, within B158DRAFT_1652 at 1723.235 kb on - strand, within B158DRAFT_1652 at 1723.235 kb on - strand, within B158DRAFT_1652 at 1723.235 kb on - strand, within B158DRAFT_1652 at 1723.235 kb on - strand, within B158DRAFT_1652 at 1723.235 kb on - strand, within B158DRAFT_1652 at 1723.297 kb on + strand, within B158DRAFT_1652 at 1723.297 kb on + strand, within B158DRAFT_1652 at 1723.302 kb on + strand, within B158DRAFT_1652 at 1723.302 kb on + strand, within B158DRAFT_1652 at 1723.318 kb on + strand at 1723.318 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.346 kb on + strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.354 kb on - strand at 1723.359 kb on - strand at 1723.364 kb on - strand at 1723.379 kb on - strand at 1723.495 kb on - strand at 1723.495 kb on - strand at 1723.513 kb on + strand, within B158DRAFT_1653 at 1723.513 kb on + strand, within B158DRAFT_1653 at 1723.513 kb on + strand, within B158DRAFT_1653 at 1723.521 kb on - strand, within B158DRAFT_1653 at 1723.521 kb on - strand, within B158DRAFT_1653 at 1723.521 kb on - strand, within B158DRAFT_1653 at 1723.539 kb on + strand, within B158DRAFT_1653 at 1723.547 kb on - strand, within B158DRAFT_1653 at 1723.625 kb on + strand, within B158DRAFT_1653 at 1723.625 kb on + strand, within B158DRAFT_1653 at 1723.633 kb on - strand, within B158DRAFT_1653 at 1723.640 kb on + strand, within B158DRAFT_1653 at 1723.670 kb on - strand, within B158DRAFT_1653 at 1723.735 kb on + strand, within B158DRAFT_1653 at 1723.743 kb on - strand, within B158DRAFT_1653 at 1723.787 kb on + strand, within B158DRAFT_1653 at 1723.787 kb on + strand, within B158DRAFT_1653 at 1723.787 kb on + strand, within B158DRAFT_1653 at 1723.788 kb on - strand, within B158DRAFT_1653 at 1723.795 kb on - strand, within B158DRAFT_1653 at 1723.795 kb on - strand, within B158DRAFT_1653 at 1723.795 kb on - strand, within B158DRAFT_1653 at 1723.796 kb on - strand, within B158DRAFT_1653
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM remove 1,720,890 - B158DRAFT_1650 0.44 +0.2 1,720,996 + B158DRAFT_1650 0.54 +0.2 1,721,110 + B158DRAFT_1650 0.63 -0.8 1,721,118 - B158DRAFT_1650 0.64 +0.5 1,721,181 + B158DRAFT_1650 0.69 -1.3 1,721,181 + B158DRAFT_1650 0.69 -0.6 1,721,181 + B158DRAFT_1650 0.69 -0.9 1,721,181 + B158DRAFT_1650 0.69 -0.3 1,721,189 - B158DRAFT_1650 0.70 -0.3 1,721,189 - B158DRAFT_1650 0.70 +1.0 1,721,189 - B158DRAFT_1650 0.70 -0.5 1,721,189 - B158DRAFT_1650 0.70 -1.6 1,721,189 - B158DRAFT_1650 0.70 -0.1 1,721,189 - B158DRAFT_1650 0.70 -0.7 1,721,217 - B158DRAFT_1650 0.72 -0.0 1,721,228 - B158DRAFT_1650 0.73 -2.6 1,721,280 - B158DRAFT_1650 0.78 +0.1 1,721,343 + B158DRAFT_1650 0.83 -0.4 1,721,406 + B158DRAFT_1650 0.89 +0.9 1,721,406 - B158DRAFT_1650 0.89 -0.5 1,721,580 + -0.1 1,721,599 + -0.3 1,721,611 + -2.5 1,721,613 + -1.6 1,721,705 + -1.6 1,721,705 + +0.8 1,721,723 - -1.4 1,721,945 - -0.8 1,722,003 + B158DRAFT_1651 0.13 +0.2 1,722,003 + B158DRAFT_1651 0.13 -1.9 1,722,008 + B158DRAFT_1651 0.13 -0.3 1,722,011 - B158DRAFT_1651 0.13 -0.5 1,722,018 + B158DRAFT_1651 0.14 +0.9 1,722,046 + B158DRAFT_1651 0.17 -1.4 1,722,075 + B158DRAFT_1651 0.20 +1.5 1,722,187 - B158DRAFT_1651 0.33 +1.1 1,722,188 - B158DRAFT_1651 0.33 +1.4 1,722,250 - B158DRAFT_1651 0.40 -0.4 1,722,488 + B158DRAFT_1651 0.66 +0.3 1,722,559 - B158DRAFT_1651 0.74 -0.6 1,722,570 - B158DRAFT_1651 0.75 -0.8 1,722,620 + B158DRAFT_1651 0.80 -0.9 1,722,630 + B158DRAFT_1651 0.82 -1.9 1,722,638 - B158DRAFT_1651 0.82 -1.1 1,722,760 - +0.1 1,722,760 - -1.2 1,722,762 + -1.0 1,722,770 - +0.2 1,722,792 + +1.1 1,722,802 + -0.0 1,722,802 + +0.5 1,722,812 - +1.5 1,722,836 + +0.0 1,722,844 - -0.5 1,722,854 + -1.7 1,722,862 - -0.8 1,722,872 + -1.2 1,722,882 + -0.6 1,722,890 - -0.2 1,722,914 + B158DRAFT_1652 0.12 -1.3 1,722,940 + B158DRAFT_1652 0.17 +0.3 1,722,941 - B158DRAFT_1652 0.17 -0.6 1,722,964 + B158DRAFT_1652 0.22 -0.6 1,723,025 + B158DRAFT_1652 0.34 +0.1 1,723,033 - B158DRAFT_1652 0.35 -0.6 1,723,037 + B158DRAFT_1652 0.36 -0.1 1,723,038 + B158DRAFT_1652 0.36 +2.1 1,723,038 - B158DRAFT_1652 0.36 -0.7 1,723,165 - B158DRAFT_1652 0.61 -2.1 1,723,212 + B158DRAFT_1652 0.70 +0.9 1,723,212 + B158DRAFT_1652 0.70 -2.5 1,723,212 + B158DRAFT_1652 0.70 -0.9 1,723,220 - B158DRAFT_1652 0.72 +1.8 1,723,220 - B158DRAFT_1652 0.72 -0.9 1,723,220 - B158DRAFT_1652 0.72 -0.5 1,723,220 - B158DRAFT_1652 0.72 -1.2 1,723,220 - B158DRAFT_1652 0.72 +0.7 1,723,220 - B158DRAFT_1652 0.72 -0.9 1,723,227 + B158DRAFT_1652 0.73 +0.9 1,723,227 + B158DRAFT_1652 0.73 -0.2 1,723,235 - B158DRAFT_1652 0.75 +1.2 1,723,235 - B158DRAFT_1652 0.75 +1.1 1,723,235 - B158DRAFT_1652 0.75 -1.0 1,723,235 - B158DRAFT_1652 0.75 +0.7 1,723,235 - B158DRAFT_1652 0.75 -0.4 1,723,235 - B158DRAFT_1652 0.75 +0.1 1,723,235 - B158DRAFT_1652 0.75 -0.5 1,723,297 + B158DRAFT_1652 0.87 -1.4 1,723,297 + B158DRAFT_1652 0.87 -1.1 1,723,302 + B158DRAFT_1652 0.88 +0.2 1,723,302 + B158DRAFT_1652 0.88 +1.4 1,723,318 + -0.0 1,723,318 + +0.3 1,723,346 + +0.7 1,723,346 + +0.4 1,723,346 + +0.6 1,723,346 + -1.3 1,723,346 + -0.0 1,723,346 + +4.4 1,723,346 + -0.5 1,723,346 + -0.4 1,723,346 + +0.7 1,723,346 + -0.3 1,723,346 + -2.1 1,723,346 + -1.3 1,723,346 + -0.5 1,723,346 + -2.5 1,723,346 + -0.6 1,723,346 + -0.4 1,723,354 - +0.8 1,723,354 - -0.9 1,723,354 - -2.3 1,723,354 - -0.2 1,723,354 - -0.5 1,723,354 - -0.9 1,723,354 - +1.8 1,723,354 - -1.9 1,723,354 - -0.6 1,723,354 - -1.2 1,723,354 - +0.1 1,723,354 - -0.5 1,723,354 - -1.1 1,723,354 - -0.5 1,723,354 - +0.7 1,723,354 - +0.1 1,723,354 - +0.8 1,723,354 - -0.5 1,723,354 - +0.4 1,723,359 - +0.1 1,723,364 - +0.4 1,723,379 - -0.4 1,723,495 - -0.8 1,723,495 - +0.8 1,723,513 + B158DRAFT_1653 0.11 -1.1 1,723,513 + B158DRAFT_1653 0.11 -1.0 1,723,513 + B158DRAFT_1653 0.11 -0.8 1,723,521 - B158DRAFT_1653 0.12 -0.6 1,723,521 - B158DRAFT_1653 0.12 -0.7 1,723,521 - B158DRAFT_1653 0.12 -1.0 1,723,539 + B158DRAFT_1653 0.14 -1.6 1,723,547 - B158DRAFT_1653 0.16 -0.7 1,723,625 + B158DRAFT_1653 0.26 +1.0 1,723,625 + B158DRAFT_1653 0.26 -0.9 1,723,633 - B158DRAFT_1653 0.27 -1.3 1,723,640 + B158DRAFT_1653 0.28 -1.0 1,723,670 - B158DRAFT_1653 0.32 -0.8 1,723,735 + B158DRAFT_1653 0.41 -0.1 1,723,743 - B158DRAFT_1653 0.42 -1.8 1,723,787 + B158DRAFT_1653 0.48 -1.6 1,723,787 + B158DRAFT_1653 0.48 -0.7 1,723,787 + B158DRAFT_1653 0.48 +0.0 1,723,788 - B158DRAFT_1653 0.48 -0.5 1,723,795 - B158DRAFT_1653 0.49 -1.1 1,723,795 - B158DRAFT_1653 0.49 -2.5 1,723,795 - B158DRAFT_1653 0.49 +0.7 1,723,796 - B158DRAFT_1653 0.49 -0.3
Or see this region's nucleotide sequence