Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1355

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1354 and B158DRAFT_1355 are separated by 306 nucleotidesB158DRAFT_1355 and B158DRAFT_1356 are separated by 103 nucleotidesB158DRAFT_1356 and B158DRAFT_1357 are separated by 82 nucleotides B158DRAFT_1354: B158DRAFT_1354 - Glycine/D-amino acid oxidases (deaminating), at 1,398,505 to 1,399,788 _1354 B158DRAFT_1355: B158DRAFT_1355 - hypothetical protein, at 1,400,095 to 1,400,514 _1355 B158DRAFT_1356: B158DRAFT_1356 - CAAX amino terminal protease family., at 1,400,618 to 1,401,205 _1356 B158DRAFT_1357: B158DRAFT_1357 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 1,401,288 to 1,401,917 _1357 Position (kb) 1400 1401Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1399.132 kb on + strand, within B158DRAFT_1354at 1399.201 kb on - strand, within B158DRAFT_1354at 1399.261 kb on - strand, within B158DRAFT_1354at 1399.284 kb on + strand, within B158DRAFT_1354at 1399.289 kb on + strand, within B158DRAFT_1354at 1399.289 kb on + strand, within B158DRAFT_1354at 1399.289 kb on + strand, within B158DRAFT_1354at 1399.289 kb on + strand, within B158DRAFT_1354at 1399.289 kb on + strand, within B158DRAFT_1354at 1399.289 kb on + strand, within B158DRAFT_1354at 1399.289 kb on + strand, within B158DRAFT_1354at 1399.289 kb on + strand, within B158DRAFT_1354at 1399.289 kb on + strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.297 kb on - strand, within B158DRAFT_1354at 1399.345 kb on - strand, within B158DRAFT_1354at 1399.428 kb on + strand, within B158DRAFT_1354at 1399.479 kb on - strand, within B158DRAFT_1354at 1399.525 kb on - strand, within B158DRAFT_1354at 1399.525 kb on - strand, within B158DRAFT_1354at 1399.547 kb on - strand, within B158DRAFT_1354at 1399.584 kb on + strand, within B158DRAFT_1354at 1399.584 kb on + strand, within B158DRAFT_1354at 1399.592 kb on - strand, within B158DRAFT_1354at 1399.592 kb on - strand, within B158DRAFT_1354at 1399.628 kb on + strand, within B158DRAFT_1354at 1399.628 kb on + strand, within B158DRAFT_1354at 1399.633 kb on + strand, within B158DRAFT_1354at 1399.654 kb on + strand, within B158DRAFT_1354at 1399.666 kb on + strandat 1399.666 kb on + strandat 1399.674 kb on - strandat 1399.689 kb on + strandat 1399.689 kb on + strandat 1399.699 kb on + strandat 1399.699 kb on + strandat 1399.699 kb on + strandat 1399.707 kb on - strandat 1399.834 kb on + strandat 1399.834 kb on + strandat 1399.834 kb on + strandat 1399.842 kb on - strandat 1399.842 kb on - strandat 1399.842 kb on - strandat 1399.879 kb on - strandat 1399.879 kb on - strandat 1399.879 kb on - strandat 1399.881 kb on + strandat 1400.012 kb on - strandat 1400.029 kb on - strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.031 kb on + strandat 1400.039 kb on - strandat 1400.039 kb on - strandat 1400.039 kb on - strandat 1400.039 kb on - strandat 1400.047 kb on + strandat 1400.055 kb on - strandat 1400.127 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.129 kb on + strandat 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.137 kb on - strand, within B158DRAFT_1355at 1400.148 kb on - strand, within B158DRAFT_1355at 1400.214 kb on - strand, within B158DRAFT_1355at 1400.385 kb on + strand, within B158DRAFT_1355at 1400.388 kb on - strand, within B158DRAFT_1355at 1400.467 kb on - strand, within B158DRAFT_1355at 1400.533 kb on + strandat 1400.582 kb on + strandat 1400.582 kb on + strandat 1400.583 kb on - strandat 1400.590 kb on - strandat 1400.590 kb on - strandat 1400.590 kb on - strandat 1400.590 kb on - strandat 1400.590 kb on - strandat 1400.652 kb on - strandat 1400.667 kb on - strandat 1400.670 kb on + strandat 1400.747 kb on + strand, within B158DRAFT_1356at 1400.747 kb on + strand, within B158DRAFT_1356at 1400.822 kb on - strand, within B158DRAFT_1356at 1400.893 kb on - strand, within B158DRAFT_1356at 1400.942 kb on - strand, within B158DRAFT_1356at 1400.942 kb on - strand, within B158DRAFT_1356at 1401.001 kb on - strand, within B158DRAFT_1356at 1401.021 kb on + strand, within B158DRAFT_1356at 1401.102 kb on - strand, within B158DRAFT_1356at 1401.109 kb on - strand, within B158DRAFT_1356at 1401.172 kb on - strandat 1401.181 kb on + strandat 1401.201 kb on - strandat 1401.250 kb on + strandat 1401.258 kb on - strandat 1401.385 kb on + strand, within B158DRAFT_1357at 1401.422 kb on + strand, within B158DRAFT_1357at 1401.430 kb on + strand, within B158DRAFT_1357at 1401.430 kb on + strand, within B158DRAFT_1357at 1401.450 kb on + strand, within B158DRAFT_1357at 1401.456 kb on + strand, within B158DRAFT_1357at 1401.458 kb on - strand, within B158DRAFT_1357at 1401.466 kb on + strand, within B158DRAFT_1357

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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1,399,132 + B158DRAFT_1354 0.49 -1.5
1,399,201 - B158DRAFT_1354 0.54 -0.8
1,399,261 - B158DRAFT_1354 0.59 -0.6
1,399,284 + B158DRAFT_1354 0.61 -0.0
1,399,289 + B158DRAFT_1354 0.61 +1.1
1,399,289 + B158DRAFT_1354 0.61 -0.6
1,399,289 + B158DRAFT_1354 0.61 -0.8
1,399,289 + B158DRAFT_1354 0.61 -1.8
1,399,289 + B158DRAFT_1354 0.61 +3.9
1,399,289 + B158DRAFT_1354 0.61 -2.6
1,399,289 + B158DRAFT_1354 0.61 +0.2
1,399,289 + B158DRAFT_1354 0.61 -0.9
1,399,289 + B158DRAFT_1354 0.61 -0.1
1,399,297 - B158DRAFT_1354 0.62 +0.7
1,399,297 - B158DRAFT_1354 0.62 -1.6
1,399,297 - B158DRAFT_1354 0.62 -0.4
1,399,297 - B158DRAFT_1354 0.62 +0.5
1,399,297 - B158DRAFT_1354 0.62 +0.3
1,399,297 - B158DRAFT_1354 0.62 -0.0
1,399,297 - B158DRAFT_1354 0.62 -0.9
1,399,297 - B158DRAFT_1354 0.62 +0.1
1,399,297 - B158DRAFT_1354 0.62 -0.7
1,399,297 - B158DRAFT_1354 0.62 +0.2
1,399,297 - B158DRAFT_1354 0.62 +0.7
1,399,345 - B158DRAFT_1354 0.65 -0.6
1,399,428 + B158DRAFT_1354 0.72 -1.2
1,399,479 - B158DRAFT_1354 0.76 -0.7
1,399,525 - B158DRAFT_1354 0.79 -0.2
1,399,525 - B158DRAFT_1354 0.79 -0.6
1,399,547 - B158DRAFT_1354 0.81 +1.4
1,399,584 + B158DRAFT_1354 0.84 -1.8
1,399,584 + B158DRAFT_1354 0.84 -2.7
1,399,592 - B158DRAFT_1354 0.85 -0.1
1,399,592 - B158DRAFT_1354 0.85 -1.8
1,399,628 + B158DRAFT_1354 0.87 +0.4
1,399,628 + B158DRAFT_1354 0.87 +0.3
1,399,633 + B158DRAFT_1354 0.88 -0.4
1,399,654 + B158DRAFT_1354 0.89 +1.5
1,399,666 + -0.3
1,399,666 + -0.5
1,399,674 - -1.0
1,399,689 + +0.4
1,399,689 + +0.4
1,399,699 + -1.0
1,399,699 + -0.6
1,399,699 + +0.3
1,399,707 - -0.3
1,399,834 + +1.3
1,399,834 + +2.5
1,399,834 + -1.0
1,399,842 - -1.5
1,399,842 - +0.1
1,399,842 - -2.2
1,399,879 - -0.4
1,399,879 - -1.5
1,399,879 - -1.0
1,399,881 + -0.2
1,400,012 - -0.7
1,400,029 - +1.8
1,400,031 + -1.5
1,400,031 + +0.0
1,400,031 + +0.6
1,400,031 + -2.4
1,400,031 + -1.4
1,400,031 + +0.5
1,400,039 - -0.6
1,400,039 - +1.6
1,400,039 - -0.6
1,400,039 - +3.7
1,400,047 + -1.0
1,400,055 - +0.7
1,400,127 + +0.2
1,400,129 + -0.2
1,400,129 + -0.2
1,400,129 + -2.2
1,400,129 + -1.5
1,400,129 + +0.6
1,400,129 + -0.6
1,400,129 + -0.1
1,400,129 + -1.7
1,400,129 + -0.2
1,400,129 + -0.4
1,400,137 - B158DRAFT_1355 0.10 +4.5
1,400,137 - B158DRAFT_1355 0.10 +0.5
1,400,137 - B158DRAFT_1355 0.10 -0.5
1,400,137 - B158DRAFT_1355 0.10 -1.1
1,400,137 - B158DRAFT_1355 0.10 -1.1
1,400,137 - B158DRAFT_1355 0.10 -2.3
1,400,137 - B158DRAFT_1355 0.10 +0.5
1,400,148 - B158DRAFT_1355 0.13 -0.4
1,400,214 - B158DRAFT_1355 0.28 -1.0
1,400,385 + B158DRAFT_1355 0.69 +1.9
1,400,388 - B158DRAFT_1355 0.70 -1.5
1,400,467 - B158DRAFT_1355 0.89 +0.3
1,400,533 + -0.1
1,400,582 + -0.4
1,400,582 + -0.5
1,400,583 - +0.5
1,400,590 - +0.9
1,400,590 - -1.0
1,400,590 - -1.5
1,400,590 - -0.5
1,400,590 - -2.2
1,400,652 - +0.6
1,400,667 - +0.6
1,400,670 + -0.3
1,400,747 + B158DRAFT_1356 0.22 -1.4
1,400,747 + B158DRAFT_1356 0.22 +0.1
1,400,822 - B158DRAFT_1356 0.35 +0.6
1,400,893 - B158DRAFT_1356 0.47 -0.9
1,400,942 - B158DRAFT_1356 0.55 -2.7
1,400,942 - B158DRAFT_1356 0.55 +1.3
1,401,001 - B158DRAFT_1356 0.65 -1.8
1,401,021 + B158DRAFT_1356 0.69 +0.0
1,401,102 - B158DRAFT_1356 0.82 -1.2
1,401,109 - B158DRAFT_1356 0.84 +0.3
1,401,172 - -0.9
1,401,181 + -0.2
1,401,201 - -0.9
1,401,250 + -1.9
1,401,258 - +0.1
1,401,385 + B158DRAFT_1357 0.15 -1.6
1,401,422 + B158DRAFT_1357 0.21 +0.6
1,401,430 + B158DRAFT_1357 0.23 -2.5
1,401,430 + B158DRAFT_1357 0.23 -1.7
1,401,450 + B158DRAFT_1357 0.26 +0.1
1,401,456 + B158DRAFT_1357 0.27 +0.0
1,401,458 - B158DRAFT_1357 0.27 +0.2
1,401,466 + B158DRAFT_1357 0.28 -1.2

Or see this region's nucleotide sequence