Experiment: m.b. copper (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1250 and B158DRAFT_1251 are separated by 36 nucleotides B158DRAFT_1251 and B158DRAFT_1252 are separated by 100 nucleotides B158DRAFT_1252 and B158DRAFT_1253 are separated by 20 nucleotides
B158DRAFT_1250: B158DRAFT_1250 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,290,106 to 1,291,107
_1250
B158DRAFT_1251: B158DRAFT_1251 - hypothetical protein, at 1,291,144 to 1,291,338
_1251
B158DRAFT_1252: B158DRAFT_1252 - Pirin-related protein, at 1,291,439 to 1,292,143
_1252
B158DRAFT_1253: B158DRAFT_1253 - Predicted permeases, at 1,292,164 to 1,292,919
_1253
Position (kb)
1291
1292 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 1290.182 kb on + strand at 1290.207 kb on - strand, within B158DRAFT_1250 at 1290.247 kb on + strand, within B158DRAFT_1250 at 1290.378 kb on - strand, within B158DRAFT_1250 at 1290.424 kb on - strand, within B158DRAFT_1250 at 1290.431 kb on + strand, within B158DRAFT_1250 at 1290.458 kb on + strand, within B158DRAFT_1250 at 1290.458 kb on + strand, within B158DRAFT_1250 at 1290.458 kb on + strand, within B158DRAFT_1250 at 1290.466 kb on - strand, within B158DRAFT_1250 at 1290.466 kb on - strand, within B158DRAFT_1250 at 1290.466 kb on - strand, within B158DRAFT_1250 at 1290.583 kb on + strand, within B158DRAFT_1250 at 1290.583 kb on + strand, within B158DRAFT_1250 at 1290.602 kb on + strand, within B158DRAFT_1250 at 1290.608 kb on + strand, within B158DRAFT_1250 at 1290.642 kb on - strand, within B158DRAFT_1250 at 1290.644 kb on + strand, within B158DRAFT_1250 at 1290.652 kb on - strand, within B158DRAFT_1250 at 1290.652 kb on - strand, within B158DRAFT_1250 at 1290.686 kb on + strand, within B158DRAFT_1250 at 1290.694 kb on - strand, within B158DRAFT_1250 at 1290.694 kb on - strand, within B158DRAFT_1250 at 1290.717 kb on + strand, within B158DRAFT_1250 at 1290.717 kb on + strand, within B158DRAFT_1250 at 1290.725 kb on - strand, within B158DRAFT_1250 at 1290.735 kb on + strand, within B158DRAFT_1250 at 1290.743 kb on - strand, within B158DRAFT_1250 at 1290.743 kb on - strand, within B158DRAFT_1250 at 1290.880 kb on - strand, within B158DRAFT_1250 at 1290.880 kb on - strand, within B158DRAFT_1250 at 1290.880 kb on - strand, within B158DRAFT_1250 at 1290.944 kb on + strand, within B158DRAFT_1250 at 1290.944 kb on + strand, within B158DRAFT_1250 at 1290.944 kb on + strand, within B158DRAFT_1250 at 1290.944 kb on + strand, within B158DRAFT_1250 at 1290.944 kb on + strand, within B158DRAFT_1250 at 1290.944 kb on + strand, within B158DRAFT_1250 at 1290.944 kb on + strand, within B158DRAFT_1250 at 1290.952 kb on - strand, within B158DRAFT_1250 at 1290.952 kb on - strand, within B158DRAFT_1250 at 1290.952 kb on - strand, within B158DRAFT_1250 at 1290.952 kb on - strand, within B158DRAFT_1250 at 1290.952 kb on - strand, within B158DRAFT_1250 at 1290.952 kb on - strand, within B158DRAFT_1250 at 1290.961 kb on + strand, within B158DRAFT_1250 at 1290.986 kb on - strand, within B158DRAFT_1250 at 1291.015 kb on + strand at 1291.023 kb on - strand at 1291.039 kb on + strand at 1291.057 kb on - strand at 1291.057 kb on - strand at 1291.057 kb on - strand at 1291.064 kb on + strand at 1291.064 kb on + strand at 1291.064 kb on + strand at 1291.064 kb on + strand at 1291.072 kb on - strand at 1291.072 kb on - strand at 1291.072 kb on - strand at 1291.128 kb on - strand at 1291.135 kb on + strand at 1291.184 kb on + strand, within B158DRAFT_1251 at 1291.189 kb on + strand, within B158DRAFT_1251 at 1291.219 kb on + strand, within B158DRAFT_1251 at 1291.230 kb on + strand, within B158DRAFT_1251 at 1291.245 kb on + strand, within B158DRAFT_1251 at 1291.245 kb on - strand, within B158DRAFT_1251 at 1291.251 kb on + strand, within B158DRAFT_1251 at 1291.298 kb on + strand, within B158DRAFT_1251 at 1291.310 kb on + strand, within B158DRAFT_1251 at 1291.397 kb on + strand at 1291.405 kb on - strand at 1291.405 kb on - strand at 1291.405 kb on - strand at 1291.405 kb on - strand at 1291.410 kb on - strand at 1291.447 kb on - strand at 1291.452 kb on + strand at 1291.460 kb on - strand at 1291.486 kb on + strand at 1291.569 kb on - strand, within B158DRAFT_1252 at 1291.576 kb on + strand, within B158DRAFT_1252 at 1291.577 kb on + strand, within B158DRAFT_1252 at 1291.577 kb on - strand, within B158DRAFT_1252 at 1291.647 kb on - strand, within B158DRAFT_1252 at 1291.658 kb on + strand, within B158DRAFT_1252 at 1291.658 kb on + strand, within B158DRAFT_1252 at 1291.663 kb on + strand, within B158DRAFT_1252 at 1291.663 kb on + strand, within B158DRAFT_1252 at 1291.663 kb on + strand, within B158DRAFT_1252 at 1291.666 kb on - strand, within B158DRAFT_1252 at 1291.666 kb on - strand, within B158DRAFT_1252 at 1291.711 kb on - strand, within B158DRAFT_1252 at 1291.711 kb on - strand, within B158DRAFT_1252 at 1291.722 kb on + strand, within B158DRAFT_1252 at 1291.722 kb on + strand, within B158DRAFT_1252 at 1291.727 kb on + strand, within B158DRAFT_1252 at 1291.730 kb on - strand, within B158DRAFT_1252 at 1291.730 kb on - strand, within B158DRAFT_1252 at 1291.735 kb on - strand, within B158DRAFT_1252 at 1291.735 kb on - strand, within B158DRAFT_1252 at 1291.821 kb on + strand, within B158DRAFT_1252 at 1291.829 kb on - strand, within B158DRAFT_1252 at 1291.829 kb on - strand, within B158DRAFT_1252 at 1291.835 kb on + strand, within B158DRAFT_1252 at 1291.843 kb on - strand, within B158DRAFT_1252 at 1291.872 kb on - strand, within B158DRAFT_1252 at 1291.886 kb on - strand, within B158DRAFT_1252 at 1291.906 kb on - strand, within B158DRAFT_1252 at 1291.908 kb on + strand, within B158DRAFT_1252 at 1291.908 kb on + strand, within B158DRAFT_1252 at 1291.908 kb on + strand, within B158DRAFT_1252 at 1291.908 kb on + strand, within B158DRAFT_1252 at 1291.913 kb on + strand, within B158DRAFT_1252 at 1291.916 kb on - strand, within B158DRAFT_1252 at 1291.921 kb on - strand, within B158DRAFT_1252 at 1291.921 kb on - strand, within B158DRAFT_1252 at 1291.942 kb on + strand, within B158DRAFT_1252 at 1291.942 kb on + strand, within B158DRAFT_1252 at 1291.942 kb on + strand, within B158DRAFT_1252 at 1291.942 kb on + strand, within B158DRAFT_1252 at 1291.945 kb on - strand, within B158DRAFT_1252 at 1291.949 kb on + strand, within B158DRAFT_1252 at 1291.950 kb on - strand, within B158DRAFT_1252 at 1291.950 kb on - strand, within B158DRAFT_1252 at 1291.950 kb on - strand, within B158DRAFT_1252 at 1291.950 kb on - strand, within B158DRAFT_1252 at 1291.950 kb on - strand, within B158DRAFT_1252 at 1291.957 kb on - strand, within B158DRAFT_1252 at 1291.959 kb on + strand, within B158DRAFT_1252 at 1291.965 kb on - strand, within B158DRAFT_1252 at 1291.965 kb on - strand, within B158DRAFT_1252 at 1291.967 kb on - strand, within B158DRAFT_1252 at 1292.000 kb on + strand, within B158DRAFT_1252 at 1292.006 kb on + strand, within B158DRAFT_1252 at 1292.006 kb on + strand, within B158DRAFT_1252 at 1292.006 kb on + strand, within B158DRAFT_1252 at 1292.014 kb on - strand, within B158DRAFT_1252 at 1292.037 kb on + strand, within B158DRAFT_1252 at 1292.045 kb on - strand, within B158DRAFT_1252 at 1292.103 kb on + strand at 1292.118 kb on - strand at 1292.132 kb on + strand at 1292.132 kb on + strand at 1292.140 kb on - strand at 1292.145 kb on + strand at 1292.189 kb on + strand at 1292.201 kb on + strand at 1292.206 kb on + strand at 1292.209 kb on - strand at 1292.214 kb on - strand at 1292.214 kb on - strand at 1292.214 kb on - strand at 1292.251 kb on + strand, within B158DRAFT_1253 at 1292.288 kb on + strand, within B158DRAFT_1253
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM remove 1,290,182 + +0.2 1,290,207 - B158DRAFT_1250 0.10 +1.8 1,290,247 + B158DRAFT_1250 0.14 -0.8 1,290,378 - B158DRAFT_1250 0.27 -2.0 1,290,424 - B158DRAFT_1250 0.32 +0.7 1,290,431 + B158DRAFT_1250 0.32 -0.8 1,290,458 + B158DRAFT_1250 0.35 +0.0 1,290,458 + B158DRAFT_1250 0.35 -0.1 1,290,458 + B158DRAFT_1250 0.35 -0.1 1,290,466 - B158DRAFT_1250 0.36 +1.4 1,290,466 - B158DRAFT_1250 0.36 -0.9 1,290,466 - B158DRAFT_1250 0.36 -1.0 1,290,583 + B158DRAFT_1250 0.48 -1.0 1,290,583 + B158DRAFT_1250 0.48 +0.2 1,290,602 + B158DRAFT_1250 0.50 -1.6 1,290,608 + B158DRAFT_1250 0.50 -1.6 1,290,642 - B158DRAFT_1250 0.53 +0.9 1,290,644 + B158DRAFT_1250 0.54 -1.0 1,290,652 - B158DRAFT_1250 0.54 -2.5 1,290,652 - B158DRAFT_1250 0.54 +0.3 1,290,686 + B158DRAFT_1250 0.58 +0.6 1,290,694 - B158DRAFT_1250 0.59 +0.4 1,290,694 - B158DRAFT_1250 0.59 -1.7 1,290,717 + B158DRAFT_1250 0.61 -1.4 1,290,717 + B158DRAFT_1250 0.61 +0.3 1,290,725 - B158DRAFT_1250 0.62 -0.2 1,290,735 + B158DRAFT_1250 0.63 -0.8 1,290,743 - B158DRAFT_1250 0.64 -1.4 1,290,743 - B158DRAFT_1250 0.64 +0.6 1,290,880 - B158DRAFT_1250 0.77 -1.1 1,290,880 - B158DRAFT_1250 0.77 -0.3 1,290,880 - B158DRAFT_1250 0.77 +1.1 1,290,944 + B158DRAFT_1250 0.84 -0.1 1,290,944 + B158DRAFT_1250 0.84 +7.5 1,290,944 + B158DRAFT_1250 0.84 -0.6 1,290,944 + B158DRAFT_1250 0.84 +0.8 1,290,944 + B158DRAFT_1250 0.84 -0.6 1,290,944 + B158DRAFT_1250 0.84 -0.5 1,290,944 + B158DRAFT_1250 0.84 +0.9 1,290,952 - B158DRAFT_1250 0.84 +1.2 1,290,952 - B158DRAFT_1250 0.84 -1.5 1,290,952 - B158DRAFT_1250 0.84 -0.5 1,290,952 - B158DRAFT_1250 0.84 -0.5 1,290,952 - B158DRAFT_1250 0.84 +1.0 1,290,952 - B158DRAFT_1250 0.84 -0.4 1,290,961 + B158DRAFT_1250 0.85 +0.1 1,290,986 - B158DRAFT_1250 0.88 -1.2 1,291,015 + -1.4 1,291,023 - -1.3 1,291,039 + +2.0 1,291,057 - -1.7 1,291,057 - +1.6 1,291,057 - -0.5 1,291,064 + -1.8 1,291,064 + +0.7 1,291,064 + +0.5 1,291,064 + +0.4 1,291,072 - -0.6 1,291,072 - +2.7 1,291,072 - +0.5 1,291,128 - -1.9 1,291,135 + -0.4 1,291,184 + B158DRAFT_1251 0.21 +0.1 1,291,189 + B158DRAFT_1251 0.23 -2.2 1,291,219 + B158DRAFT_1251 0.38 -0.3 1,291,230 + B158DRAFT_1251 0.44 -0.5 1,291,245 + B158DRAFT_1251 0.52 -1.0 1,291,245 - B158DRAFT_1251 0.52 -1.4 1,291,251 + B158DRAFT_1251 0.55 -0.4 1,291,298 + B158DRAFT_1251 0.79 -0.3 1,291,310 + B158DRAFT_1251 0.85 -0.6 1,291,397 + +1.7 1,291,405 - -0.6 1,291,405 - +0.8 1,291,405 - +1.1 1,291,405 - +2.1 1,291,410 - -1.1 1,291,447 - +0.1 1,291,452 + -0.2 1,291,460 - +0.2 1,291,486 + +0.1 1,291,569 - B158DRAFT_1252 0.18 -1.4 1,291,576 + B158DRAFT_1252 0.19 +0.7 1,291,577 + B158DRAFT_1252 0.20 -0.4 1,291,577 - B158DRAFT_1252 0.20 -1.1 1,291,647 - B158DRAFT_1252 0.30 +0.2 1,291,658 + B158DRAFT_1252 0.31 -2.2 1,291,658 + B158DRAFT_1252 0.31 -0.2 1,291,663 + B158DRAFT_1252 0.32 +0.3 1,291,663 + B158DRAFT_1252 0.32 -0.6 1,291,663 + B158DRAFT_1252 0.32 +0.5 1,291,666 - B158DRAFT_1252 0.32 +0.6 1,291,666 - B158DRAFT_1252 0.32 -0.7 1,291,711 - B158DRAFT_1252 0.39 -2.1 1,291,711 - B158DRAFT_1252 0.39 -1.3 1,291,722 + B158DRAFT_1252 0.40 -0.4 1,291,722 + B158DRAFT_1252 0.40 -0.9 1,291,727 + B158DRAFT_1252 0.41 -1.2 1,291,730 - B158DRAFT_1252 0.41 -0.8 1,291,730 - B158DRAFT_1252 0.41 +1.0 1,291,735 - B158DRAFT_1252 0.42 -0.0 1,291,735 - B158DRAFT_1252 0.42 -2.1 1,291,821 + B158DRAFT_1252 0.54 -0.7 1,291,829 - B158DRAFT_1252 0.55 +0.4 1,291,829 - B158DRAFT_1252 0.55 +0.5 1,291,835 + B158DRAFT_1252 0.56 -0.4 1,291,843 - B158DRAFT_1252 0.57 -0.3 1,291,872 - B158DRAFT_1252 0.61 -3.3 1,291,886 - B158DRAFT_1252 0.63 -0.3 1,291,906 - B158DRAFT_1252 0.66 +0.1 1,291,908 + B158DRAFT_1252 0.67 -0.8 1,291,908 + B158DRAFT_1252 0.67 +0.7 1,291,908 + B158DRAFT_1252 0.67 -1.0 1,291,908 + B158DRAFT_1252 0.67 -1.5 1,291,913 + B158DRAFT_1252 0.67 -0.0 1,291,916 - B158DRAFT_1252 0.68 -0.8 1,291,921 - B158DRAFT_1252 0.68 -2.0 1,291,921 - B158DRAFT_1252 0.68 -0.4 1,291,942 + B158DRAFT_1252 0.71 +1.4 1,291,942 + B158DRAFT_1252 0.71 -1.3 1,291,942 + B158DRAFT_1252 0.71 -0.6 1,291,942 + B158DRAFT_1252 0.71 -0.2 1,291,945 - B158DRAFT_1252 0.72 -0.1 1,291,949 + B158DRAFT_1252 0.72 -0.9 1,291,950 - B158DRAFT_1252 0.72 -0.1 1,291,950 - B158DRAFT_1252 0.72 -1.8 1,291,950 - B158DRAFT_1252 0.72 +0.3 1,291,950 - B158DRAFT_1252 0.72 +0.6 1,291,950 - B158DRAFT_1252 0.72 -2.2 1,291,957 - B158DRAFT_1252 0.73 -0.5 1,291,959 + B158DRAFT_1252 0.74 -2.0 1,291,965 - B158DRAFT_1252 0.75 +3.2 1,291,965 - B158DRAFT_1252 0.75 -0.5 1,291,967 - B158DRAFT_1252 0.75 -1.0 1,292,000 + B158DRAFT_1252 0.80 -0.1 1,292,006 + B158DRAFT_1252 0.80 -1.6 1,292,006 + B158DRAFT_1252 0.80 -1.6 1,292,006 + B158DRAFT_1252 0.80 -0.5 1,292,014 - B158DRAFT_1252 0.82 +1.4 1,292,037 + B158DRAFT_1252 0.85 -0.3 1,292,045 - B158DRAFT_1252 0.86 -0.3 1,292,103 + +0.7 1,292,118 - -1.0 1,292,132 + +0.1 1,292,132 + -0.1 1,292,140 - -0.8 1,292,145 + +0.0 1,292,189 + -0.9 1,292,201 + -0.1 1,292,206 + -1.6 1,292,209 - -0.9 1,292,214 - -0.3 1,292,214 - -0.0 1,292,214 - -0.3 1,292,251 + B158DRAFT_1253 0.12 -0.1 1,292,288 + B158DRAFT_1253 0.16 -0.1
Or see this region's nucleotide sequence