Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1249

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1248 and B158DRAFT_1249 are separated by 148 nucleotidesB158DRAFT_1249 and B158DRAFT_1250 are separated by 260 nucleotides B158DRAFT_1248: B158DRAFT_1248 - cytochrome d oxidase, subunit II (cydB), at 1,288,303 to 1,289,319 _1248 B158DRAFT_1249: B158DRAFT_1249 - Lactoylglutathione lyase and related lyases, at 1,289,468 to 1,289,845 _1249 B158DRAFT_1250: B158DRAFT_1250 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,290,106 to 1,291,107 _1250 Position (kb) 1289 1290Strain fitness (log2 ratio) -2 -1 0 1 2at 1288.468 kb on - strand, within B158DRAFT_1248at 1288.508 kb on - strand, within B158DRAFT_1248at 1288.518 kb on - strand, within B158DRAFT_1248at 1288.527 kb on + strand, within B158DRAFT_1248at 1288.536 kb on + strand, within B158DRAFT_1248at 1288.536 kb on + strand, within B158DRAFT_1248at 1288.558 kb on + strand, within B158DRAFT_1248at 1288.607 kb on + strand, within B158DRAFT_1248at 1288.647 kb on + strand, within B158DRAFT_1248at 1288.655 kb on - strand, within B158DRAFT_1248at 1288.660 kb on - strand, within B158DRAFT_1248at 1288.691 kb on + strand, within B158DRAFT_1248at 1288.696 kb on + strand, within B158DRAFT_1248at 1288.721 kb on - strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.730 kb on + strand, within B158DRAFT_1248at 1288.736 kb on - strand, within B158DRAFT_1248at 1288.736 kb on - strand, within B158DRAFT_1248at 1289.042 kb on - strand, within B158DRAFT_1248at 1289.042 kb on - strand, within B158DRAFT_1248at 1289.042 kb on - strand, within B158DRAFT_1248at 1289.073 kb on - strand, within B158DRAFT_1248at 1289.136 kb on - strand, within B158DRAFT_1248at 1289.162 kb on - strand, within B158DRAFT_1248at 1289.162 kb on - strand, within B158DRAFT_1248at 1289.186 kb on + strand, within B158DRAFT_1248at 1289.242 kb on - strandat 1289.301 kb on + strandat 1289.323 kb on + strandat 1289.342 kb on + strandat 1289.350 kb on - strandat 1289.350 kb on - strandat 1289.387 kb on - strandat 1289.407 kb on - strandat 1289.412 kb on - strandat 1289.425 kb on + strandat 1289.702 kb on + strand, within B158DRAFT_1249at 1289.702 kb on + strand, within B158DRAFT_1249at 1289.782 kb on + strand, within B158DRAFT_1249at 1289.796 kb on + strand, within B158DRAFT_1249at 1289.806 kb on + strand, within B158DRAFT_1249at 1289.812 kb on + strandat 1289.820 kb on - strandat 1289.820 kb on - strandat 1289.820 kb on - strandat 1289.820 kb on - strandat 1290.025 kb on + strandat 1290.039 kb on + strandat 1290.047 kb on - strandat 1290.065 kb on + strandat 1290.066 kb on - strandat 1290.109 kb on + strandat 1290.109 kb on + strandat 1290.109 kb on + strandat 1290.109 kb on + strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.131 kb on + strandat 1290.182 kb on + strandat 1290.207 kb on - strand, within B158DRAFT_1250at 1290.247 kb on + strand, within B158DRAFT_1250at 1290.378 kb on - strand, within B158DRAFT_1250at 1290.424 kb on - strand, within B158DRAFT_1250at 1290.431 kb on + strand, within B158DRAFT_1250at 1290.458 kb on + strand, within B158DRAFT_1250at 1290.458 kb on + strand, within B158DRAFT_1250at 1290.458 kb on + strand, within B158DRAFT_1250at 1290.466 kb on - strand, within B158DRAFT_1250at 1290.466 kb on - strand, within B158DRAFT_1250at 1290.466 kb on - strand, within B158DRAFT_1250at 1290.583 kb on + strand, within B158DRAFT_1250at 1290.583 kb on + strand, within B158DRAFT_1250at 1290.602 kb on + strand, within B158DRAFT_1250at 1290.608 kb on + strand, within B158DRAFT_1250at 1290.642 kb on - strand, within B158DRAFT_1250at 1290.644 kb on + strand, within B158DRAFT_1250at 1290.652 kb on - strand, within B158DRAFT_1250at 1290.652 kb on - strand, within B158DRAFT_1250at 1290.686 kb on + strand, within B158DRAFT_1250at 1290.694 kb on - strand, within B158DRAFT_1250at 1290.694 kb on - strand, within B158DRAFT_1250at 1290.717 kb on + strand, within B158DRAFT_1250at 1290.717 kb on + strand, within B158DRAFT_1250at 1290.725 kb on - strand, within B158DRAFT_1250at 1290.735 kb on + strand, within B158DRAFT_1250at 1290.743 kb on - strand, within B158DRAFT_1250at 1290.743 kb on - strand, within B158DRAFT_1250

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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1,288,468 - B158DRAFT_1248 0.16 -2.1
1,288,508 - B158DRAFT_1248 0.20 -1.5
1,288,518 - B158DRAFT_1248 0.21 -0.1
1,288,527 + B158DRAFT_1248 0.22 +0.7
1,288,536 + B158DRAFT_1248 0.23 +0.6
1,288,536 + B158DRAFT_1248 0.23 -0.4
1,288,558 + B158DRAFT_1248 0.25 +0.4
1,288,607 + B158DRAFT_1248 0.30 -0.0
1,288,647 + B158DRAFT_1248 0.34 +0.6
1,288,655 - B158DRAFT_1248 0.35 +0.4
1,288,660 - B158DRAFT_1248 0.35 +1.0
1,288,691 + B158DRAFT_1248 0.38 -0.4
1,288,696 + B158DRAFT_1248 0.39 -1.1
1,288,721 - B158DRAFT_1248 0.41 +0.5
1,288,728 + B158DRAFT_1248 0.42 -0.3
1,288,728 + B158DRAFT_1248 0.42 +0.4
1,288,728 + B158DRAFT_1248 0.42 -0.1
1,288,728 + B158DRAFT_1248 0.42 -0.8
1,288,728 + B158DRAFT_1248 0.42 +0.4
1,288,730 + B158DRAFT_1248 0.42 -0.3
1,288,736 - B158DRAFT_1248 0.43 -1.3
1,288,736 - B158DRAFT_1248 0.43 -0.7
1,289,042 - B158DRAFT_1248 0.73 -0.2
1,289,042 - B158DRAFT_1248 0.73 +0.4
1,289,042 - B158DRAFT_1248 0.73 -1.7
1,289,073 - B158DRAFT_1248 0.76 +1.8
1,289,136 - B158DRAFT_1248 0.82 -0.8
1,289,162 - B158DRAFT_1248 0.84 -0.6
1,289,162 - B158DRAFT_1248 0.84 +1.0
1,289,186 + B158DRAFT_1248 0.87 +0.1
1,289,242 - +0.1
1,289,301 + -1.1
1,289,323 + -0.8
1,289,342 + -1.0
1,289,350 - -0.8
1,289,350 - +0.3
1,289,387 - -0.1
1,289,407 - -0.7
1,289,412 - +0.2
1,289,425 + -1.4
1,289,702 + B158DRAFT_1249 0.62 +1.4
1,289,702 + B158DRAFT_1249 0.62 -1.2
1,289,782 + B158DRAFT_1249 0.83 -0.5
1,289,796 + B158DRAFT_1249 0.87 -2.1
1,289,806 + B158DRAFT_1249 0.89 +0.8
1,289,812 + +0.2
1,289,820 - -0.1
1,289,820 - -1.2
1,289,820 - -1.8
1,289,820 - -1.2
1,290,025 + -0.8
1,290,039 + -0.4
1,290,047 - +0.6
1,290,065 + -0.9
1,290,066 - -0.7
1,290,109 + -0.6
1,290,109 + +1.2
1,290,109 + +0.1
1,290,109 + -0.1
1,290,117 - -0.6
1,290,117 - -1.5
1,290,117 - +1.4
1,290,117 - +0.3
1,290,117 - +0.9
1,290,117 - +1.3
1,290,117 - +1.2
1,290,117 - -1.2
1,290,131 + +0.2
1,290,182 + +0.2
1,290,207 - B158DRAFT_1250 0.10 +1.8
1,290,247 + B158DRAFT_1250 0.14 -0.8
1,290,378 - B158DRAFT_1250 0.27 -2.0
1,290,424 - B158DRAFT_1250 0.32 +0.7
1,290,431 + B158DRAFT_1250 0.32 -0.8
1,290,458 + B158DRAFT_1250 0.35 +0.0
1,290,458 + B158DRAFT_1250 0.35 -0.1
1,290,458 + B158DRAFT_1250 0.35 -0.1
1,290,466 - B158DRAFT_1250 0.36 +1.4
1,290,466 - B158DRAFT_1250 0.36 -0.9
1,290,466 - B158DRAFT_1250 0.36 -1.0
1,290,583 + B158DRAFT_1250 0.48 -1.0
1,290,583 + B158DRAFT_1250 0.48 +0.2
1,290,602 + B158DRAFT_1250 0.50 -1.6
1,290,608 + B158DRAFT_1250 0.50 -1.6
1,290,642 - B158DRAFT_1250 0.53 +0.9
1,290,644 + B158DRAFT_1250 0.54 -1.0
1,290,652 - B158DRAFT_1250 0.54 -2.5
1,290,652 - B158DRAFT_1250 0.54 +0.3
1,290,686 + B158DRAFT_1250 0.58 +0.6
1,290,694 - B158DRAFT_1250 0.59 +0.4
1,290,694 - B158DRAFT_1250 0.59 -1.7
1,290,717 + B158DRAFT_1250 0.61 -1.4
1,290,717 + B158DRAFT_1250 0.61 +0.3
1,290,725 - B158DRAFT_1250 0.62 -0.2
1,290,735 + B158DRAFT_1250 0.63 -0.8
1,290,743 - B158DRAFT_1250 0.64 -1.4
1,290,743 - B158DRAFT_1250 0.64 +0.6

Or see this region's nucleotide sequence