Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1212

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1210 and B158DRAFT_1211 are separated by 71 nucleotidesB158DRAFT_1211 and B158DRAFT_1212 are separated by 116 nucleotidesB158DRAFT_1212 and B158DRAFT_1213 are separated by 7 nucleotidesB158DRAFT_1213 and B158DRAFT_1214 are separated by 53 nucleotidesB158DRAFT_1214 and B158DRAFT_1215 overlap by 46 nucleotides B158DRAFT_1210: B158DRAFT_1210 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 1,249,803 to 1,250,978 _1210 B158DRAFT_1211: B158DRAFT_1211 - Predicted transcriptional regulators, at 1,251,050 to 1,251,475 _1211 B158DRAFT_1212: B158DRAFT_1212 - Spermidine synthase, at 1,251,592 to 1,252,503 _1212 B158DRAFT_1213: B158DRAFT_1213 - hypothetical protein, at 1,252,511 to 1,253,134 _1213 B158DRAFT_1214: B158DRAFT_1214 - hypothetical protein, at 1,253,188 to 1,253,379 _1214 B158DRAFT_1215: B158DRAFT_1215 - Superoxide dismutase, at 1,253,334 to 1,253,915 _1215 Position (kb) 1251 1252 1253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 1250.597 kb on - strand, within B158DRAFT_1210at 1250.647 kb on - strand, within B158DRAFT_1210at 1250.723 kb on + strand, within B158DRAFT_1210at 1250.731 kb on - strand, within B158DRAFT_1210at 1250.840 kb on + strand, within B158DRAFT_1210at 1250.895 kb on + strandat 1250.972 kb on + strandat 1250.972 kb on - strandat 1251.097 kb on + strand, within B158DRAFT_1211at 1251.105 kb on - strand, within B158DRAFT_1211at 1251.105 kb on - strand, within B158DRAFT_1211at 1251.176 kb on + strand, within B158DRAFT_1211at 1251.203 kb on + strand, within B158DRAFT_1211at 1251.211 kb on - strand, within B158DRAFT_1211at 1251.211 kb on - strand, within B158DRAFT_1211at 1251.211 kb on - strand, within B158DRAFT_1211at 1251.249 kb on + strand, within B158DRAFT_1211at 1251.254 kb on + strand, within B158DRAFT_1211at 1251.256 kb on - strand, within B158DRAFT_1211at 1251.284 kb on - strand, within B158DRAFT_1211at 1251.324 kb on + strand, within B158DRAFT_1211at 1251.324 kb on + strand, within B158DRAFT_1211at 1251.337 kb on + strand, within B158DRAFT_1211at 1251.346 kb on + strand, within B158DRAFT_1211at 1251.354 kb on - strand, within B158DRAFT_1211at 1251.496 kb on + strandat 1251.548 kb on + strandat 1251.611 kb on + strandat 1251.611 kb on + strandat 1251.611 kb on + strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.626 kb on + strandat 1251.679 kb on - strandat 1251.685 kb on - strand, within B158DRAFT_1212at 1251.765 kb on + strand, within B158DRAFT_1212at 1251.773 kb on - strand, within B158DRAFT_1212at 1251.911 kb on + strand, within B158DRAFT_1212at 1251.911 kb on + strand, within B158DRAFT_1212at 1251.985 kb on - strand, within B158DRAFT_1212at 1252.060 kb on - strand, within B158DRAFT_1212at 1252.155 kb on + strand, within B158DRAFT_1212at 1252.183 kb on + strand, within B158DRAFT_1212at 1252.183 kb on + strand, within B158DRAFT_1212at 1252.191 kb on - strand, within B158DRAFT_1212at 1252.234 kb on - strand, within B158DRAFT_1212at 1252.234 kb on - strand, within B158DRAFT_1212at 1252.312 kb on - strand, within B158DRAFT_1212at 1252.344 kb on + strand, within B158DRAFT_1212at 1252.362 kb on - strand, within B158DRAFT_1212at 1252.362 kb on - strand, within B158DRAFT_1212at 1252.368 kb on + strand, within B158DRAFT_1212at 1252.376 kb on + strand, within B158DRAFT_1212at 1252.376 kb on - strand, within B158DRAFT_1212at 1252.426 kb on + strandat 1252.426 kb on + strandat 1252.426 kb on + strandat 1252.426 kb on + strandat 1252.431 kb on + strandat 1252.431 kb on + strandat 1252.434 kb on - strandat 1252.439 kb on - strandat 1252.471 kb on + strandat 1252.474 kb on - strandat 1252.488 kb on + strandat 1252.539 kb on + strandat 1252.539 kb on + strandat 1252.600 kb on + strand, within B158DRAFT_1213at 1252.642 kb on - strand, within B158DRAFT_1213at 1252.674 kb on + strand, within B158DRAFT_1213at 1252.679 kb on + strand, within B158DRAFT_1213at 1252.679 kb on + strand, within B158DRAFT_1213at 1252.679 kb on + strand, within B158DRAFT_1213at 1252.687 kb on - strand, within B158DRAFT_1213at 1252.687 kb on - strand, within B158DRAFT_1213at 1252.687 kb on - strand, within B158DRAFT_1213at 1252.687 kb on - strand, within B158DRAFT_1213at 1252.687 kb on - strand, within B158DRAFT_1213at 1252.687 kb on - strand, within B158DRAFT_1213at 1252.687 kb on - strand, within B158DRAFT_1213at 1252.687 kb on - strand, within B158DRAFT_1213at 1252.687 kb on - strand, within B158DRAFT_1213at 1252.724 kb on + strand, within B158DRAFT_1213at 1252.724 kb on + strand, within B158DRAFT_1213at 1252.724 kb on + strand, within B158DRAFT_1213at 1252.724 kb on + strand, within B158DRAFT_1213at 1252.724 kb on + strand, within B158DRAFT_1213at 1252.724 kb on + strand, within B158DRAFT_1213at 1252.729 kb on + strand, within B158DRAFT_1213at 1252.732 kb on - strand, within B158DRAFT_1213at 1252.732 kb on - strand, within B158DRAFT_1213at 1252.734 kb on + strand, within B158DRAFT_1213at 1252.734 kb on + strand, within B158DRAFT_1213at 1252.742 kb on - strand, within B158DRAFT_1213at 1252.883 kb on + strand, within B158DRAFT_1213at 1252.884 kb on + strand, within B158DRAFT_1213at 1252.885 kb on - strand, within B158DRAFT_1213at 1252.885 kb on - strand, within B158DRAFT_1213at 1252.938 kb on + strand, within B158DRAFT_1213at 1252.997 kb on + strand, within B158DRAFT_1213at 1253.082 kb on - strandat 1253.109 kb on + strandat 1253.127 kb on - strandat 1253.233 kb on + strand, within B158DRAFT_1214at 1253.241 kb on - strand, within B158DRAFT_1214at 1253.284 kb on + strand, within B158DRAFT_1214

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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1,250,597 - B158DRAFT_1210 0.68 +1.5
1,250,647 - B158DRAFT_1210 0.72 +1.4
1,250,723 + B158DRAFT_1210 0.78 +1.8
1,250,731 - B158DRAFT_1210 0.79 +2.0
1,250,840 + B158DRAFT_1210 0.88 +3.5
1,250,895 + +1.2
1,250,972 + +2.0
1,250,972 - -1.3
1,251,097 + B158DRAFT_1211 0.11 -2.3
1,251,105 - B158DRAFT_1211 0.13 -0.0
1,251,105 - B158DRAFT_1211 0.13 -0.9
1,251,176 + B158DRAFT_1211 0.30 +0.1
1,251,203 + B158DRAFT_1211 0.36 -1.1
1,251,211 - B158DRAFT_1211 0.38 +0.7
1,251,211 - B158DRAFT_1211 0.38 -0.7
1,251,211 - B158DRAFT_1211 0.38 -1.9
1,251,249 + B158DRAFT_1211 0.47 +8.8
1,251,254 + B158DRAFT_1211 0.48 +1.0
1,251,256 - B158DRAFT_1211 0.48 +0.1
1,251,284 - B158DRAFT_1211 0.55 +0.6
1,251,324 + B158DRAFT_1211 0.64 +2.0
1,251,324 + B158DRAFT_1211 0.64 -0.2
1,251,337 + B158DRAFT_1211 0.67 +0.9
1,251,346 + B158DRAFT_1211 0.69 +0.2
1,251,354 - B158DRAFT_1211 0.71 +1.2
1,251,496 + -0.9
1,251,548 + -0.9
1,251,611 + -2.2
1,251,611 + -1.4
1,251,611 + +0.6
1,251,619 - -1.9
1,251,619 - +2.5
1,251,619 - -2.2
1,251,626 + +0.2
1,251,679 - +0.8
1,251,685 - B158DRAFT_1212 0.10 -0.9
1,251,765 + B158DRAFT_1212 0.19 +1.8
1,251,773 - B158DRAFT_1212 0.20 -1.5
1,251,911 + B158DRAFT_1212 0.35 +0.1
1,251,911 + B158DRAFT_1212 0.35 +0.8
1,251,985 - B158DRAFT_1212 0.43 -2.7
1,252,060 - B158DRAFT_1212 0.51 -0.7
1,252,155 + B158DRAFT_1212 0.62 +2.1
1,252,183 + B158DRAFT_1212 0.65 +0.1
1,252,183 + B158DRAFT_1212 0.65 +0.1
1,252,191 - B158DRAFT_1212 0.66 -0.2
1,252,234 - B158DRAFT_1212 0.70 +0.1
1,252,234 - B158DRAFT_1212 0.70 +0.4
1,252,312 - B158DRAFT_1212 0.79 +2.2
1,252,344 + B158DRAFT_1212 0.82 +1.6
1,252,362 - B158DRAFT_1212 0.84 -0.2
1,252,362 - B158DRAFT_1212 0.84 -0.2
1,252,368 + B158DRAFT_1212 0.85 +0.0
1,252,376 + B158DRAFT_1212 0.86 -1.0
1,252,376 - B158DRAFT_1212 0.86 +0.2
1,252,426 + -0.1
1,252,426 + -0.8
1,252,426 + -2.8
1,252,426 + +0.7
1,252,431 + -0.5
1,252,431 + -0.2
1,252,434 - -1.2
1,252,439 - -0.1
1,252,471 + -0.0
1,252,474 - +0.1
1,252,488 + -2.2
1,252,539 + +0.1
1,252,539 + +0.2
1,252,600 + B158DRAFT_1213 0.14 -1.2
1,252,642 - B158DRAFT_1213 0.21 +1.7
1,252,674 + B158DRAFT_1213 0.26 +0.4
1,252,679 + B158DRAFT_1213 0.27 +0.6
1,252,679 + B158DRAFT_1213 0.27 +0.1
1,252,679 + B158DRAFT_1213 0.27 -0.0
1,252,687 - B158DRAFT_1213 0.28 -0.1
1,252,687 - B158DRAFT_1213 0.28 -1.5
1,252,687 - B158DRAFT_1213 0.28 +0.0
1,252,687 - B158DRAFT_1213 0.28 -2.7
1,252,687 - B158DRAFT_1213 0.28 -2.4
1,252,687 - B158DRAFT_1213 0.28 -1.0
1,252,687 - B158DRAFT_1213 0.28 -0.4
1,252,687 - B158DRAFT_1213 0.28 -1.4
1,252,687 - B158DRAFT_1213 0.28 -0.5
1,252,724 + B158DRAFT_1213 0.34 +1.3
1,252,724 + B158DRAFT_1213 0.34 -1.4
1,252,724 + B158DRAFT_1213 0.34 +0.9
1,252,724 + B158DRAFT_1213 0.34 +1.4
1,252,724 + B158DRAFT_1213 0.34 -0.4
1,252,724 + B158DRAFT_1213 0.34 -0.8
1,252,729 + B158DRAFT_1213 0.35 -0.5
1,252,732 - B158DRAFT_1213 0.35 -1.4
1,252,732 - B158DRAFT_1213 0.35 -0.7
1,252,734 + B158DRAFT_1213 0.36 -0.6
1,252,734 + B158DRAFT_1213 0.36 -2.1
1,252,742 - B158DRAFT_1213 0.37 +0.4
1,252,883 + B158DRAFT_1213 0.60 +1.4
1,252,884 + B158DRAFT_1213 0.60 +1.1
1,252,885 - B158DRAFT_1213 0.60 -0.6
1,252,885 - B158DRAFT_1213 0.60 -1.7
1,252,938 + B158DRAFT_1213 0.68 -1.4
1,252,997 + B158DRAFT_1213 0.78 +2.2
1,253,082 - +1.9
1,253,109 + -0.4
1,253,127 - +0.7
1,253,233 + B158DRAFT_1214 0.23 -0.0
1,253,241 - B158DRAFT_1214 0.28 +0.7
1,253,284 + B158DRAFT_1214 0.50 +0.7

Or see this region's nucleotide sequence