Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0957

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0956 and B158DRAFT_0957 are separated by 24 nucleotidesB158DRAFT_0957 and B158DRAFT_0958 are separated by 11 nucleotides B158DRAFT_0956: B158DRAFT_0956 - dissimilatory nitrite reductase (NO-forming), copper type apoprotein, at 986,724 to 988,136 _0956 B158DRAFT_0957: B158DRAFT_0957 - Uncharacterized conserved protein, at 988,161 to 988,973 _0957 B158DRAFT_0958: B158DRAFT_0958 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 988,985 to 989,557 _0958 Position (kb) 988 989Strain fitness (log2 ratio) -2 -1 0 1 2at 987.167 kb on - strand, within B158DRAFT_0956at 987.186 kb on + strand, within B158DRAFT_0956at 987.186 kb on + strand, within B158DRAFT_0956at 987.268 kb on + strand, within B158DRAFT_0956at 987.317 kb on - strand, within B158DRAFT_0956at 987.379 kb on - strand, within B158DRAFT_0956at 987.398 kb on - strand, within B158DRAFT_0956at 987.423 kb on - strand, within B158DRAFT_0956at 987.448 kb on - strand, within B158DRAFT_0956at 987.553 kb on - strand, within B158DRAFT_0956at 987.752 kb on - strand, within B158DRAFT_0956at 987.851 kb on - strand, within B158DRAFT_0956at 987.867 kb on + strand, within B158DRAFT_0956at 987.867 kb on + strand, within B158DRAFT_0956at 987.872 kb on + strand, within B158DRAFT_0956at 987.875 kb on - strand, within B158DRAFT_0956at 987.895 kb on - strand, within B158DRAFT_0956at 987.899 kb on + strand, within B158DRAFT_0956at 987.907 kb on - strand, within B158DRAFT_0956at 987.959 kb on - strand, within B158DRAFT_0956at 987.959 kb on - strand, within B158DRAFT_0956at 988.000 kb on + strandat 988.008 kb on - strandat 988.016 kb on + strandat 988.024 kb on - strandat 988.261 kb on - strand, within B158DRAFT_0957at 988.267 kb on + strand, within B158DRAFT_0957at 988.324 kb on - strand, within B158DRAFT_0957at 988.324 kb on - strand, within B158DRAFT_0957at 988.324 kb on - strand, within B158DRAFT_0957at 988.353 kb on + strand, within B158DRAFT_0957at 988.460 kb on + strand, within B158DRAFT_0957at 988.460 kb on + strand, within B158DRAFT_0957at 988.468 kb on - strand, within B158DRAFT_0957at 988.553 kb on + strand, within B158DRAFT_0957at 988.553 kb on + strand, within B158DRAFT_0957at 988.560 kb on + strand, within B158DRAFT_0957at 988.560 kb on + strand, within B158DRAFT_0957at 988.561 kb on - strand, within B158DRAFT_0957at 988.561 kb on - strand, within B158DRAFT_0957at 988.568 kb on - strand, within B158DRAFT_0957at 988.568 kb on - strand, within B158DRAFT_0957at 988.587 kb on - strand, within B158DRAFT_0957at 988.664 kb on - strand, within B158DRAFT_0957at 988.723 kb on - strand, within B158DRAFT_0957at 988.789 kb on - strand, within B158DRAFT_0957at 988.789 kb on - strand, within B158DRAFT_0957at 988.870 kb on + strand, within B158DRAFT_0957at 988.955 kb on - strandat 988.955 kb on - strandat 989.017 kb on + strandat 989.142 kb on - strand, within B158DRAFT_0958at 989.156 kb on + strand, within B158DRAFT_0958at 989.252 kb on + strand, within B158DRAFT_0958at 989.260 kb on - strand, within B158DRAFT_0958at 989.265 kb on - strand, within B158DRAFT_0958at 989.269 kb on + strand, within B158DRAFT_0958at 989.281 kb on - strand, within B158DRAFT_0958at 989.291 kb on - strand, within B158DRAFT_0958at 989.437 kb on + strand, within B158DRAFT_0958at 989.637 kb on + strandat 989.637 kb on + strandat 989.637 kb on + strandat 989.637 kb on + strandat 989.637 kb on + strandat 989.645 kb on - strandat 989.645 kb on - strandat 989.645 kb on - strandat 989.645 kb on - strandat 989.657 kb on - strandat 989.675 kb on - strandat 989.701 kb on + strandat 989.701 kb on + strandat 989.706 kb on + strandat 989.715 kb on + strandat 989.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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987,167 - B158DRAFT_0956 0.31 -1.9
987,186 + B158DRAFT_0956 0.33 +1.8
987,186 + B158DRAFT_0956 0.33 -0.1
987,268 + B158DRAFT_0956 0.38 -0.8
987,317 - B158DRAFT_0956 0.42 -1.8
987,379 - B158DRAFT_0956 0.46 -1.9
987,398 - B158DRAFT_0956 0.48 -0.9
987,423 - B158DRAFT_0956 0.49 +0.4
987,448 - B158DRAFT_0956 0.51 -0.7
987,553 - B158DRAFT_0956 0.59 -0.2
987,752 - B158DRAFT_0956 0.73 -0.2
987,851 - B158DRAFT_0956 0.80 +1.5
987,867 + B158DRAFT_0956 0.81 -1.9
987,867 + B158DRAFT_0956 0.81 +0.2
987,872 + B158DRAFT_0956 0.81 +0.2
987,875 - B158DRAFT_0956 0.81 -0.4
987,895 - B158DRAFT_0956 0.83 -0.6
987,899 + B158DRAFT_0956 0.83 -1.7
987,907 - B158DRAFT_0956 0.84 -0.3
987,959 - B158DRAFT_0956 0.87 +0.6
987,959 - B158DRAFT_0956 0.87 -1.6
988,000 + +0.3
988,008 - -0.3
988,016 + -1.5
988,024 - -2.1
988,261 - B158DRAFT_0957 0.12 +0.0
988,267 + B158DRAFT_0957 0.13 +0.4
988,324 - B158DRAFT_0957 0.20 -0.1
988,324 - B158DRAFT_0957 0.20 -0.5
988,324 - B158DRAFT_0957 0.20 -0.6
988,353 + B158DRAFT_0957 0.24 -1.6
988,460 + B158DRAFT_0957 0.37 -0.9
988,460 + B158DRAFT_0957 0.37 +1.1
988,468 - B158DRAFT_0957 0.38 -0.5
988,553 + B158DRAFT_0957 0.48 -0.2
988,553 + B158DRAFT_0957 0.48 -0.6
988,560 + B158DRAFT_0957 0.49 -1.1
988,560 + B158DRAFT_0957 0.49 +0.2
988,561 - B158DRAFT_0957 0.49 +0.4
988,561 - B158DRAFT_0957 0.49 -1.6
988,568 - B158DRAFT_0957 0.50 -1.0
988,568 - B158DRAFT_0957 0.50 -0.2
988,587 - B158DRAFT_0957 0.52 -1.7
988,664 - B158DRAFT_0957 0.62 +2.3
988,723 - B158DRAFT_0957 0.69 -0.3
988,789 - B158DRAFT_0957 0.77 -0.4
988,789 - B158DRAFT_0957 0.77 -1.0
988,870 + B158DRAFT_0957 0.87 -0.7
988,955 - -0.9
988,955 - -0.3
989,017 + -0.9
989,142 - B158DRAFT_0958 0.27 -0.0
989,156 + B158DRAFT_0958 0.30 -0.2
989,252 + B158DRAFT_0958 0.47 -0.6
989,260 - B158DRAFT_0958 0.48 +1.0
989,265 - B158DRAFT_0958 0.49 +0.3
989,269 + B158DRAFT_0958 0.50 -0.3
989,281 - B158DRAFT_0958 0.52 -1.2
989,291 - B158DRAFT_0958 0.53 -0.4
989,437 + B158DRAFT_0958 0.79 -0.6
989,637 + +0.4
989,637 + +0.6
989,637 + -0.3
989,637 + +1.2
989,637 + +0.9
989,645 - -1.1
989,645 - -0.6
989,645 - -0.6
989,645 - +0.9
989,657 - -0.8
989,675 - -0.6
989,701 + -0.9
989,701 + -1.3
989,706 + -0.2
989,715 + -0.5
989,723 - -0.4

Or see this region's nucleotide sequence