Experiment: m.b. copper (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0901 and B158DRAFT_0902 are separated by 510 nucleotides B158DRAFT_0902 and B158DRAFT_0903 are separated by 181 nucleotides B158DRAFT_0903 and B158DRAFT_0904 are separated by 156 nucleotides
B158DRAFT_0901: B158DRAFT_0901 - dissimilatory nitrite reductase (NO-forming), cytochrome cd1 type apoprotein, at 924,018 to 926,081
_0901
B158DRAFT_0902: B158DRAFT_0902 - phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1), at 926,592 to 927,548
_0902
B158DRAFT_0903: B158DRAFT_0903 - hypothetical protein, at 927,730 to 928,125
_0903
B158DRAFT_0904: B158DRAFT_0904 - 1-aminocyclopropane-1-carboxylate deaminase, at 928,282 to 929,145
_0904
Position (kb) 926
927
928 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 925.674 kb on + strand, within B158DRAFT_0901 at 925.674 kb on + strand, within B158DRAFT_0901 at 925.674 kb on + strand, within B158DRAFT_0901 at 925.674 kb on + strand, within B158DRAFT_0901 at 925.674 kb on + strand, within B158DRAFT_0901 at 925.674 kb on + strand, within B158DRAFT_0901 at 925.682 kb on - strand, within B158DRAFT_0901 at 925.682 kb on - strand, within B158DRAFT_0901 at 925.682 kb on - strand, within B158DRAFT_0901 at 925.682 kb on - strand, within B158DRAFT_0901 at 925.682 kb on - strand, within B158DRAFT_0901 at 925.682 kb on - strand, within B158DRAFT_0901 at 925.682 kb on - strand, within B158DRAFT_0901 at 925.682 kb on - strand, within B158DRAFT_0901 at 925.786 kb on + strand, within B158DRAFT_0901 at 925.796 kb on + strand, within B158DRAFT_0901 at 925.844 kb on + strand, within B158DRAFT_0901 at 925.867 kb on + strand, within B158DRAFT_0901 at 925.906 kb on - strand at 925.932 kb on + strand at 925.932 kb on + strand at 925.935 kb on - strand at 925.935 kb on - strand at 925.937 kb on + strand at 925.991 kb on + strand at 925.991 kb on + strand at 925.991 kb on + strand at 925.999 kb on - strand at 925.999 kb on - strand at 926.008 kb on + strand at 926.008 kb on + strand at 926.083 kb on - strand at 926.088 kb on - strand at 926.090 kb on + strand at 926.098 kb on - strand at 926.098 kb on - strand at 926.252 kb on + strand at 926.260 kb on - strand at 926.265 kb on + strand at 926.275 kb on - strand at 926.279 kb on + strand at 926.388 kb on - strand at 926.388 kb on - strand at 926.413 kb on + strand at 926.413 kb on + strand at 926.421 kb on - strand at 926.421 kb on - strand at 926.731 kb on - strand, within B158DRAFT_0902 at 926.735 kb on - strand, within B158DRAFT_0902 at 926.771 kb on + strand, within B158DRAFT_0902 at 926.771 kb on + strand, within B158DRAFT_0902 at 926.771 kb on + strand, within B158DRAFT_0902 at 926.779 kb on - strand, within B158DRAFT_0902 at 926.786 kb on - strand, within B158DRAFT_0902 at 926.923 kb on + strand, within B158DRAFT_0902 at 926.994 kb on - strand, within B158DRAFT_0902 at 927.022 kb on - strand, within B158DRAFT_0902 at 927.052 kb on - strand, within B158DRAFT_0902 at 927.075 kb on + strand, within B158DRAFT_0902 at 927.076 kb on + strand, within B158DRAFT_0902 at 927.083 kb on - strand, within B158DRAFT_0902 at 927.084 kb on - strand, within B158DRAFT_0902 at 927.089 kb on - strand, within B158DRAFT_0902 at 927.143 kb on - strand, within B158DRAFT_0902 at 927.289 kb on + strand, within B158DRAFT_0902 at 927.692 kb on + strand at 927.814 kb on - strand, within B158DRAFT_0903 at 927.816 kb on + strand, within B158DRAFT_0903 at 927.824 kb on - strand, within B158DRAFT_0903 at 927.840 kb on + strand, within B158DRAFT_0903 at 927.848 kb on + strand, within B158DRAFT_0903 at 927.856 kb on - strand, within B158DRAFT_0903 at 927.931 kb on - strand, within B158DRAFT_0903 at 927.938 kb on + strand, within B158DRAFT_0903 at 927.938 kb on + strand, within B158DRAFT_0903 at 927.946 kb on - strand, within B158DRAFT_0903 at 927.946 kb on - strand, within B158DRAFT_0903 at 927.946 kb on - strand, within B158DRAFT_0903 at 927.946 kb on - strand, within B158DRAFT_0903 at 927.946 kb on - strand, within B158DRAFT_0903 at 928.133 kb on - strand at 928.201 kb on + strand at 928.201 kb on + strand at 928.209 kb on - strand at 928.209 kb on - strand at 928.209 kb on - strand at 928.346 kb on - strand at 928.388 kb on - strand, within B158DRAFT_0904 at 928.516 kb on + strand, within B158DRAFT_0904
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM remove 925,674 + B158DRAFT_0901 0.80 +0.0 925,674 + B158DRAFT_0901 0.80 -1.6 925,674 + B158DRAFT_0901 0.80 +0.1 925,674 + B158DRAFT_0901 0.80 +0.8 925,674 + B158DRAFT_0901 0.80 -0.1 925,674 + B158DRAFT_0901 0.80 -0.5 925,682 - B158DRAFT_0901 0.81 -0.3 925,682 - B158DRAFT_0901 0.81 +0.3 925,682 - B158DRAFT_0901 0.81 +0.9 925,682 - B158DRAFT_0901 0.81 -1.1 925,682 - B158DRAFT_0901 0.81 +0.2 925,682 - B158DRAFT_0901 0.81 -0.6 925,682 - B158DRAFT_0901 0.81 +0.1 925,682 - B158DRAFT_0901 0.81 +0.5 925,786 + B158DRAFT_0901 0.86 -0.7 925,796 + B158DRAFT_0901 0.86 -0.5 925,844 + B158DRAFT_0901 0.88 -1.4 925,867 + B158DRAFT_0901 0.90 -0.1 925,906 - -0.3 925,932 + -0.2 925,932 + +0.0 925,935 - +0.1 925,935 - -0.2 925,937 + -0.3 925,991 + -0.8 925,991 + -0.7 925,991 + +1.1 925,999 - +1.0 925,999 - +0.3 926,008 + -1.1 926,008 + -0.3 926,083 - +0.2 926,088 - -0.2 926,090 + +0.0 926,098 - -0.4 926,098 - -1.1 926,252 + -0.3 926,260 - +0.2 926,265 + -0.9 926,275 - -0.5 926,279 + +0.4 926,388 - +0.4 926,388 - -0.3 926,413 + +2.1 926,413 + -0.6 926,421 - -0.6 926,421 - -1.2 926,731 - B158DRAFT_0902 0.15 -0.4 926,735 - B158DRAFT_0902 0.15 -0.5 926,771 + B158DRAFT_0902 0.19 -0.4 926,771 + B158DRAFT_0902 0.19 +0.6 926,771 + B158DRAFT_0902 0.19 +0.7 926,779 - B158DRAFT_0902 0.20 -0.6 926,786 - B158DRAFT_0902 0.20 -1.8 926,923 + B158DRAFT_0902 0.35 +0.6 926,994 - B158DRAFT_0902 0.42 +0.4 927,022 - B158DRAFT_0902 0.45 -0.5 927,052 - B158DRAFT_0902 0.48 +1.9 927,075 + B158DRAFT_0902 0.50 +0.9 927,076 + B158DRAFT_0902 0.51 -1.6 927,083 - B158DRAFT_0902 0.51 -1.6 927,084 - B158DRAFT_0902 0.51 -1.4 927,089 - B158DRAFT_0902 0.52 +0.4 927,143 - B158DRAFT_0902 0.58 -0.5 927,289 + B158DRAFT_0902 0.73 +1.3 927,692 + +0.2 927,814 - B158DRAFT_0903 0.21 -1.8 927,816 + B158DRAFT_0903 0.22 -1.3 927,824 - B158DRAFT_0903 0.24 -0.4 927,840 + B158DRAFT_0903 0.28 -0.3 927,848 + B158DRAFT_0903 0.30 -0.6 927,856 - B158DRAFT_0903 0.32 -0.1 927,931 - B158DRAFT_0903 0.51 -0.5 927,938 + B158DRAFT_0903 0.53 -0.1 927,938 + B158DRAFT_0903 0.53 +1.6 927,946 - B158DRAFT_0903 0.55 +0.3 927,946 - B158DRAFT_0903 0.55 +0.3 927,946 - B158DRAFT_0903 0.55 -0.2 927,946 - B158DRAFT_0903 0.55 -0.8 927,946 - B158DRAFT_0903 0.55 -0.4 928,133 - -2.3 928,201 + +3.8 928,201 + -0.2 928,209 - +0.1 928,209 - +0.3 928,209 - +0.9 928,346 - -1.8 928,388 - B158DRAFT_0904 0.12 -2.5 928,516 + B158DRAFT_0904 0.27 +0.5
Or see this region's nucleotide sequence