Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0602

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0601 and B158DRAFT_0602 are separated by 41 nucleotidesB158DRAFT_0602 and B158DRAFT_0603 are separated by 154 nucleotides B158DRAFT_0601: B158DRAFT_0601 - DNA replication and repair protein RecN, at 605,196 to 606,854 _0601 B158DRAFT_0602: B158DRAFT_0602 - Predicted sugar kinase, at 606,896 to 607,771 _0602 B158DRAFT_0603: B158DRAFT_0603 - heat-inducible transcription repressor HrcA, at 607,926 to 608,954 _0603 Position (kb) 606 607 608Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 605.908 kb on + strand, within B158DRAFT_0601at 605.913 kb on + strand, within B158DRAFT_0601at 605.921 kb on - strand, within B158DRAFT_0601at 605.944 kb on + strand, within B158DRAFT_0601at 605.945 kb on - strand, within B158DRAFT_0601at 605.971 kb on - strand, within B158DRAFT_0601at 605.980 kb on + strand, within B158DRAFT_0601at 606.022 kb on - strand, within B158DRAFT_0601at 606.022 kb on - strand, within B158DRAFT_0601at 606.033 kb on + strand, within B158DRAFT_0601at 606.113 kb on - strand, within B158DRAFT_0601at 606.182 kb on - strand, within B158DRAFT_0601at 606.258 kb on - strand, within B158DRAFT_0601at 606.275 kb on + strand, within B158DRAFT_0601at 606.283 kb on - strand, within B158DRAFT_0601at 606.283 kb on - strand, within B158DRAFT_0601at 606.285 kb on + strand, within B158DRAFT_0601at 606.293 kb on - strand, within B158DRAFT_0601at 606.293 kb on - strand, within B158DRAFT_0601at 606.339 kb on - strand, within B158DRAFT_0601at 606.370 kb on + strand, within B158DRAFT_0601at 606.378 kb on - strand, within B158DRAFT_0601at 606.378 kb on - strand, within B158DRAFT_0601at 606.380 kb on + strand, within B158DRAFT_0601at 606.409 kb on - strand, within B158DRAFT_0601at 606.416 kb on - strand, within B158DRAFT_0601at 606.430 kb on - strand, within B158DRAFT_0601at 606.450 kb on + strand, within B158DRAFT_0601at 606.458 kb on - strand, within B158DRAFT_0601at 606.458 kb on - strand, within B158DRAFT_0601at 606.549 kb on - strand, within B158DRAFT_0601at 606.571 kb on - strand, within B158DRAFT_0601at 606.592 kb on + strand, within B158DRAFT_0601at 606.619 kb on - strand, within B158DRAFT_0601at 606.721 kb on + strandat 606.721 kb on + strandat 606.721 kb on + strandat 606.721 kb on + strandat 606.721 kb on + strandat 606.726 kb on + strandat 606.729 kb on - strandat 606.729 kb on - strandat 606.839 kb on + strandat 606.839 kb on + strandat 606.846 kb on + strandat 606.854 kb on - strandat 606.854 kb on - strandat 606.854 kb on - strandat 606.854 kb on - strandat 606.901 kb on + strandat 606.902 kb on - strandat 606.902 kb on - strandat 606.909 kb on - strandat 607.836 kb on + strandat 607.873 kb on + strandat 607.873 kb on + strandat 607.880 kb on + strandat 607.880 kb on + strandat 607.880 kb on + strandat 607.881 kb on - strandat 607.881 kb on - strandat 607.881 kb on - strandat 607.881 kb on - strandat 607.881 kb on - strandat 607.887 kb on + strandat 607.895 kb on - strandat 607.895 kb on - strandat 607.895 kb on - strandat 607.895 kb on - strandat 607.956 kb on - strandat 607.966 kb on - strandat 607.971 kb on + strandat 608.057 kb on + strand, within B158DRAFT_0603at 608.065 kb on - strand, within B158DRAFT_0603at 608.083 kb on + strand, within B158DRAFT_0603at 608.134 kb on + strand, within B158DRAFT_0603at 608.249 kb on + strand, within B158DRAFT_0603at 608.249 kb on + strand, within B158DRAFT_0603at 608.249 kb on + strand, within B158DRAFT_0603at 608.252 kb on - strand, within B158DRAFT_0603at 608.254 kb on + strand, within B158DRAFT_0603at 608.254 kb on + strand, within B158DRAFT_0603at 608.260 kb on + strand, within B158DRAFT_0603at 608.261 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.278 kb on - strand, within B158DRAFT_0603at 608.278 kb on - strand, within B158DRAFT_0603at 608.300 kb on - strand, within B158DRAFT_0603at 608.327 kb on + strand, within B158DRAFT_0603at 608.335 kb on - strand, within B158DRAFT_0603at 608.358 kb on - strand, within B158DRAFT_0603at 608.400 kb on + strand, within B158DRAFT_0603at 608.425 kb on + strand, within B158DRAFT_0603at 608.433 kb on - strand, within B158DRAFT_0603at 608.493 kb on + strand, within B158DRAFT_0603at 608.495 kb on + strand, within B158DRAFT_0603at 608.501 kb on - strand, within B158DRAFT_0603at 608.501 kb on - strand, within B158DRAFT_0603at 608.503 kb on - strand, within B158DRAFT_0603at 608.536 kb on - strand, within B158DRAFT_0603at 608.573 kb on - strand, within B158DRAFT_0603at 608.604 kb on + strand, within B158DRAFT_0603at 608.622 kb on + strand, within B158DRAFT_0603at 608.622 kb on + strand, within B158DRAFT_0603at 608.624 kb on - strand, within B158DRAFT_0603at 608.630 kb on - strand, within B158DRAFT_0603at 608.630 kb on - strand, within B158DRAFT_0603at 608.630 kb on - strand, within B158DRAFT_0603at 608.659 kb on - strand, within B158DRAFT_0603at 608.669 kb on - strand, within B158DRAFT_0603at 608.760 kb on - strand, within B158DRAFT_0603

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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605,908 + B158DRAFT_0601 0.43 +1.3
605,913 + B158DRAFT_0601 0.43 -0.6
605,921 - B158DRAFT_0601 0.44 +0.2
605,944 + B158DRAFT_0601 0.45 +0.0
605,945 - B158DRAFT_0601 0.45 -0.3
605,971 - B158DRAFT_0601 0.47 +0.5
605,980 + B158DRAFT_0601 0.47 -1.8
606,022 - B158DRAFT_0601 0.50 +1.4
606,022 - B158DRAFT_0601 0.50 +0.2
606,033 + B158DRAFT_0601 0.50 -2.0
606,113 - B158DRAFT_0601 0.55 -1.2
606,182 - B158DRAFT_0601 0.59 -1.0
606,258 - B158DRAFT_0601 0.64 +0.1
606,275 + B158DRAFT_0601 0.65 -0.5
606,283 - B158DRAFT_0601 0.66 -1.5
606,283 - B158DRAFT_0601 0.66 +0.4
606,285 + B158DRAFT_0601 0.66 -1.3
606,293 - B158DRAFT_0601 0.66 +5.2
606,293 - B158DRAFT_0601 0.66 +1.0
606,339 - B158DRAFT_0601 0.69 -1.2
606,370 + B158DRAFT_0601 0.71 -0.8
606,378 - B158DRAFT_0601 0.71 -1.0
606,378 - B158DRAFT_0601 0.71 -1.2
606,380 + B158DRAFT_0601 0.71 -0.7
606,409 - B158DRAFT_0601 0.73 -0.3
606,416 - B158DRAFT_0601 0.74 +1.0
606,430 - B158DRAFT_0601 0.74 -0.5
606,450 + B158DRAFT_0601 0.76 +0.2
606,458 - B158DRAFT_0601 0.76 -0.4
606,458 - B158DRAFT_0601 0.76 +2.1
606,549 - B158DRAFT_0601 0.82 -0.9
606,571 - B158DRAFT_0601 0.83 -0.1
606,592 + B158DRAFT_0601 0.84 -1.9
606,619 - B158DRAFT_0601 0.86 +0.9
606,721 + -1.2
606,721 + -0.3
606,721 + -0.3
606,721 + +1.3
606,721 + -1.9
606,726 + +0.1
606,729 - +1.1
606,729 - -1.4
606,839 + -1.5
606,839 + +0.8
606,846 + +0.5
606,854 - -0.2
606,854 - -1.7
606,854 - -2.0
606,854 - -0.5
606,901 + -1.1
606,902 - +0.4
606,902 - +0.0
606,909 - -0.8
607,836 + -1.0
607,873 + +1.9
607,873 + -1.0
607,880 + -1.1
607,880 + +2.2
607,880 + +1.5
607,881 - -0.8
607,881 - -2.4
607,881 - +0.2
607,881 - +0.2
607,881 - -0.5
607,887 + +0.4
607,895 - +1.0
607,895 - -1.1
607,895 - -0.2
607,895 - +0.4
607,956 - -1.5
607,966 - +0.3
607,971 + -1.4
608,057 + B158DRAFT_0603 0.13 -1.3
608,065 - B158DRAFT_0603 0.14 +0.2
608,083 + B158DRAFT_0603 0.15 -0.9
608,134 + B158DRAFT_0603 0.20 +1.2
608,249 + B158DRAFT_0603 0.31 -0.1
608,249 + B158DRAFT_0603 0.31 -0.4
608,249 + B158DRAFT_0603 0.31 -0.2
608,252 - B158DRAFT_0603 0.32 -0.5
608,254 + B158DRAFT_0603 0.32 -0.6
608,254 + B158DRAFT_0603 0.32 -1.1
608,260 + B158DRAFT_0603 0.32 +0.5
608,261 - B158DRAFT_0603 0.33 -1.0
608,268 - B158DRAFT_0603 0.33 +1.5
608,268 - B158DRAFT_0603 0.33 -1.7
608,268 - B158DRAFT_0603 0.33 -1.5
608,268 - B158DRAFT_0603 0.33 +2.1
608,278 - B158DRAFT_0603 0.34 -1.1
608,278 - B158DRAFT_0603 0.34 -1.4
608,300 - B158DRAFT_0603 0.36 -0.5
608,327 + B158DRAFT_0603 0.39 -0.4
608,335 - B158DRAFT_0603 0.40 +1.5
608,358 - B158DRAFT_0603 0.42 -0.5
608,400 + B158DRAFT_0603 0.46 -0.2
608,425 + B158DRAFT_0603 0.48 +1.2
608,433 - B158DRAFT_0603 0.49 +0.0
608,493 + B158DRAFT_0603 0.55 -0.5
608,495 + B158DRAFT_0603 0.55 -0.4
608,501 - B158DRAFT_0603 0.56 -2.1
608,501 - B158DRAFT_0603 0.56 -1.4
608,503 - B158DRAFT_0603 0.56 +0.5
608,536 - B158DRAFT_0603 0.59 -1.0
608,573 - B158DRAFT_0603 0.63 +2.9
608,604 + B158DRAFT_0603 0.66 +1.8
608,622 + B158DRAFT_0603 0.68 -1.4
608,622 + B158DRAFT_0603 0.68 -0.7
608,624 - B158DRAFT_0603 0.68 +0.1
608,630 - B158DRAFT_0603 0.68 +0.7
608,630 - B158DRAFT_0603 0.68 +0.5
608,630 - B158DRAFT_0603 0.68 -2.5
608,659 - B158DRAFT_0603 0.71 -1.3
608,669 - B158DRAFT_0603 0.72 -1.7
608,760 - B158DRAFT_0603 0.81 -1.4

Or see this region's nucleotide sequence