Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0560

Experiment: m.b. copper (II) chloride 0.625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0559 and B158DRAFT_0560 are separated by 153 nucleotidesB158DRAFT_0560 and B158DRAFT_0561 are separated by 153 nucleotidesB158DRAFT_0561 and B158DRAFT_0562 are separated by 151 nucleotides B158DRAFT_0559: B158DRAFT_0559 - marine proteobacterial sortase target protein, at 563,370 to 565,430 _0559 B158DRAFT_0560: B158DRAFT_0560 - Uncharacterized protein conserved in bacteria, at 565,584 to 566,294 _0560 B158DRAFT_0561: B158DRAFT_0561 - Predicted membrane protein, at 566,448 to 566,846 _0561 B158DRAFT_0562: B158DRAFT_0562 - hypothetical protein, at 566,998 to 567,423 _0562 Position (kb) 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 564.585 kb on + strand, within B158DRAFT_0559at 564.585 kb on + strand, within B158DRAFT_0559at 564.601 kb on + strand, within B158DRAFT_0559at 564.601 kb on + strand, within B158DRAFT_0559at 564.619 kb on - strand, within B158DRAFT_0559at 564.626 kb on - strand, within B158DRAFT_0559at 564.679 kb on - strand, within B158DRAFT_0559at 564.714 kb on - strand, within B158DRAFT_0559at 564.719 kb on + strand, within B158DRAFT_0559at 564.754 kb on + strand, within B158DRAFT_0559at 564.754 kb on + strand, within B158DRAFT_0559at 564.754 kb on + strand, within B158DRAFT_0559at 564.762 kb on - strand, within B158DRAFT_0559at 564.775 kb on + strand, within B158DRAFT_0559at 564.775 kb on + strand, within B158DRAFT_0559at 564.775 kb on + strand, within B158DRAFT_0559at 564.788 kb on - strand, within B158DRAFT_0559at 564.820 kb on + strand, within B158DRAFT_0559at 564.828 kb on - strand, within B158DRAFT_0559at 564.828 kb on - strand, within B158DRAFT_0559at 564.858 kb on + strand, within B158DRAFT_0559at 564.899 kb on + strand, within B158DRAFT_0559at 564.913 kb on + strand, within B158DRAFT_0559at 564.915 kb on - strand, within B158DRAFT_0559at 564.956 kb on + strand, within B158DRAFT_0559at 565.054 kb on + strand, within B158DRAFT_0559at 565.062 kb on - strand, within B158DRAFT_0559at 565.086 kb on + strand, within B158DRAFT_0559at 565.119 kb on - strand, within B158DRAFT_0559at 565.263 kb on - strandat 565.305 kb on + strandat 565.358 kb on - strandat 565.650 kb on - strandat 565.687 kb on + strand, within B158DRAFT_0560at 565.687 kb on + strand, within B158DRAFT_0560at 565.687 kb on + strand, within B158DRAFT_0560at 565.695 kb on - strand, within B158DRAFT_0560at 565.698 kb on + strand, within B158DRAFT_0560at 565.718 kb on - strand, within B158DRAFT_0560at 565.718 kb on - strand, within B158DRAFT_0560at 566.028 kb on + strand, within B158DRAFT_0560at 566.098 kb on - strand, within B158DRAFT_0560at 566.143 kb on + strand, within B158DRAFT_0560at 566.151 kb on - strand, within B158DRAFT_0560at 566.161 kb on + strand, within B158DRAFT_0560at 566.169 kb on - strand, within B158DRAFT_0560at 566.175 kb on - strand, within B158DRAFT_0560at 566.453 kb on - strandat 566.453 kb on - strandat 566.531 kb on - strand, within B158DRAFT_0561at 566.580 kb on - strand, within B158DRAFT_0561at 566.580 kb on - strand, within B158DRAFT_0561at 566.580 kb on - strand, within B158DRAFT_0561at 566.586 kb on + strand, within B158DRAFT_0561at 566.700 kb on - strand, within B158DRAFT_0561at 566.724 kb on + strand, within B158DRAFT_0561at 566.726 kb on + strand, within B158DRAFT_0561at 566.726 kb on + strand, within B158DRAFT_0561at 566.734 kb on - strand, within B158DRAFT_0561at 566.848 kb on + strandat 566.848 kb on + strandat 566.848 kb on + strandat 566.848 kb on + strandat 566.848 kb on + strandat 566.848 kb on + strandat 566.856 kb on - strandat 566.856 kb on - strandat 566.856 kb on - strandat 566.856 kb on - strandat 566.856 kb on - strandat 566.856 kb on - strandat 566.856 kb on - strandat 566.899 kb on + strandat 566.899 kb on + strandat 566.906 kb on - strandat 566.907 kb on - strandat 566.907 kb on - strandat 566.907 kb on - strandat 566.942 kb on - strandat 566.984 kb on + strandat 567.031 kb on + strandat 567.061 kb on + strand, within B158DRAFT_0562at 567.061 kb on + strand, within B158DRAFT_0562at 567.068 kb on + strand, within B158DRAFT_0562at 567.069 kb on - strand, within B158DRAFT_0562at 567.130 kb on - strand, within B158DRAFT_0562at 567.188 kb on + strand, within B158DRAFT_0562at 567.188 kb on + strand, within B158DRAFT_0562at 567.241 kb on + strand, within B158DRAFT_0562at 567.241 kb on + strand, within B158DRAFT_0562at 567.249 kb on - strand, within B158DRAFT_0562

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
remove
564,585 + B158DRAFT_0559 0.59 +1.0
564,585 + B158DRAFT_0559 0.59 -0.8
564,601 + B158DRAFT_0559 0.60 -1.0
564,601 + B158DRAFT_0559 0.60 +0.7
564,619 - B158DRAFT_0559 0.61 -1.8
564,626 - B158DRAFT_0559 0.61 -1.1
564,679 - B158DRAFT_0559 0.64 -1.0
564,714 - B158DRAFT_0559 0.65 -1.7
564,719 + B158DRAFT_0559 0.65 +0.2
564,754 + B158DRAFT_0559 0.67 +1.0
564,754 + B158DRAFT_0559 0.67 -2.9
564,754 + B158DRAFT_0559 0.67 -1.0
564,762 - B158DRAFT_0559 0.68 -1.2
564,775 + B158DRAFT_0559 0.68 -0.4
564,775 + B158DRAFT_0559 0.68 -2.8
564,775 + B158DRAFT_0559 0.68 +0.9
564,788 - B158DRAFT_0559 0.69 -0.9
564,820 + B158DRAFT_0559 0.70 +0.8
564,828 - B158DRAFT_0559 0.71 -0.9
564,828 - B158DRAFT_0559 0.71 -0.9
564,858 + B158DRAFT_0559 0.72 +1.1
564,899 + B158DRAFT_0559 0.74 -0.3
564,913 + B158DRAFT_0559 0.75 -0.6
564,915 - B158DRAFT_0559 0.75 -0.7
564,956 + B158DRAFT_0559 0.77 +0.2
565,054 + B158DRAFT_0559 0.82 -0.4
565,062 - B158DRAFT_0559 0.82 -0.6
565,086 + B158DRAFT_0559 0.83 -1.1
565,119 - B158DRAFT_0559 0.85 -0.8
565,263 - -1.5
565,305 + -0.6
565,358 - -0.8
565,650 - -0.7
565,687 + B158DRAFT_0560 0.14 -0.4
565,687 + B158DRAFT_0560 0.14 -0.2
565,687 + B158DRAFT_0560 0.14 -1.8
565,695 - B158DRAFT_0560 0.16 -2.6
565,698 + B158DRAFT_0560 0.16 +0.6
565,718 - B158DRAFT_0560 0.19 +0.6
565,718 - B158DRAFT_0560 0.19 -0.2
566,028 + B158DRAFT_0560 0.62 -1.6
566,098 - B158DRAFT_0560 0.72 -0.6
566,143 + B158DRAFT_0560 0.79 +2.0
566,151 - B158DRAFT_0560 0.80 -1.0
566,161 + B158DRAFT_0560 0.81 -1.2
566,169 - B158DRAFT_0560 0.82 -0.4
566,175 - B158DRAFT_0560 0.83 +1.0
566,453 - +0.4
566,453 - -0.2
566,531 - B158DRAFT_0561 0.21 -0.8
566,580 - B158DRAFT_0561 0.33 -1.5
566,580 - B158DRAFT_0561 0.33 -1.2
566,580 - B158DRAFT_0561 0.33 +1.9
566,586 + B158DRAFT_0561 0.35 -2.6
566,700 - B158DRAFT_0561 0.63 -1.2
566,724 + B158DRAFT_0561 0.69 -0.5
566,726 + B158DRAFT_0561 0.70 -0.3
566,726 + B158DRAFT_0561 0.70 -1.0
566,734 - B158DRAFT_0561 0.72 +1.0
566,848 + +3.6
566,848 + -0.2
566,848 + -0.5
566,848 + -0.2
566,848 + +1.0
566,848 + -0.6
566,856 - -1.5
566,856 - +0.4
566,856 - -1.1
566,856 - -0.4
566,856 - +0.6
566,856 - +0.1
566,856 - -2.6
566,899 + -0.3
566,899 + -1.0
566,906 - +0.4
566,907 - -1.4
566,907 - -1.4
566,907 - -0.1
566,942 - +0.2
566,984 + -3.2
567,031 + +1.5
567,061 + B158DRAFT_0562 0.15 -0.7
567,061 + B158DRAFT_0562 0.15 +1.1
567,068 + B158DRAFT_0562 0.16 -0.9
567,069 - B158DRAFT_0562 0.17 -1.4
567,130 - B158DRAFT_0562 0.31 +1.3
567,188 + B158DRAFT_0562 0.45 -0.2
567,188 + B158DRAFT_0562 0.45 -0.8
567,241 + B158DRAFT_0562 0.57 -0.2
567,241 + B158DRAFT_0562 0.57 -3.1
567,249 - B158DRAFT_0562 0.59 -0.4

Or see this region's nucleotide sequence