Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0558

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0556 and B158DRAFT_0557 are separated by 9 nucleotidesB158DRAFT_0557 and B158DRAFT_0558 are separated by 202 nucleotidesB158DRAFT_0558 and B158DRAFT_0559 are separated by 11 nucleotides B158DRAFT_0556: B158DRAFT_0556 - thymidylate synthase (EC 2.1.1.45), at 561,270 to 562,064 _0556 B158DRAFT_0557: B158DRAFT_0557 - Dihydrofolate reductase, at 562,074 to 562,586 _0557 B158DRAFT_0558: B158DRAFT_0558 - sortase, marine proteobacterial type, at 562,789 to 563,358 _0558 B158DRAFT_0559: B158DRAFT_0559 - marine proteobacterial sortase target protein, at 563,370 to 565,430 _0559 Position (kb) 562 563 564Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 562.606 kb on - strandat 562.608 kb on + strandat 562.616 kb on - strandat 562.700 kb on + strandat 562.816 kb on + strandat 562.816 kb on + strandat 562.841 kb on - strandat 562.858 kb on - strand, within B158DRAFT_0558at 562.883 kb on + strand, within B158DRAFT_0558at 562.891 kb on - strand, within B158DRAFT_0558at 562.891 kb on - strand, within B158DRAFT_0558at 562.891 kb on - strand, within B158DRAFT_0558at 562.953 kb on + strand, within B158DRAFT_0558at 562.958 kb on + strand, within B158DRAFT_0558at 562.958 kb on + strand, within B158DRAFT_0558at 562.961 kb on - strand, within B158DRAFT_0558at 562.961 kb on - strand, within B158DRAFT_0558at 562.988 kb on + strand, within B158DRAFT_0558at 562.988 kb on + strand, within B158DRAFT_0558at 562.996 kb on - strand, within B158DRAFT_0558at 563.141 kb on - strand, within B158DRAFT_0558at 563.176 kb on + strand, within B158DRAFT_0558at 563.183 kb on + strand, within B158DRAFT_0558at 563.184 kb on - strand, within B158DRAFT_0558at 563.188 kb on + strand, within B158DRAFT_0558at 563.188 kb on + strand, within B158DRAFT_0558at 563.196 kb on - strand, within B158DRAFT_0558at 563.197 kb on - strand, within B158DRAFT_0558at 563.198 kb on - strand, within B158DRAFT_0558at 563.214 kb on + strand, within B158DRAFT_0558at 563.226 kb on + strand, within B158DRAFT_0558at 563.258 kb on + strand, within B158DRAFT_0558at 563.258 kb on + strand, within B158DRAFT_0558at 563.258 kb on + strand, within B158DRAFT_0558at 563.266 kb on - strand, within B158DRAFT_0558at 563.266 kb on - strand, within B158DRAFT_0558at 563.270 kb on + strand, within B158DRAFT_0558at 563.270 kb on + strand, within B158DRAFT_0558at 563.304 kb on + strandat 563.304 kb on + strandat 563.311 kb on + strandat 563.311 kb on + strandat 563.319 kb on - strandat 563.319 kb on - strandat 563.324 kb on - strandat 563.381 kb on - strandat 563.441 kb on - strandat 563.467 kb on + strandat 563.472 kb on + strandat 563.475 kb on - strandat 563.475 kb on - strandat 563.482 kb on - strandat 563.487 kb on - strandat 563.515 kb on + strandat 563.572 kb on + strandat 563.645 kb on + strand, within B158DRAFT_0559at 563.776 kb on + strand, within B158DRAFT_0559at 563.804 kb on + strand, within B158DRAFT_0559at 563.812 kb on - strand, within B158DRAFT_0559at 563.841 kb on - strand, within B158DRAFT_0559at 563.843 kb on + strand, within B158DRAFT_0559at 563.843 kb on + strand, within B158DRAFT_0559at 563.843 kb on + strand, within B158DRAFT_0559at 563.843 kb on + strand, within B158DRAFT_0559at 563.851 kb on - strand, within B158DRAFT_0559at 563.881 kb on - strand, within B158DRAFT_0559at 563.881 kb on - strand, within B158DRAFT_0559at 563.910 kb on + strand, within B158DRAFT_0559at 563.981 kb on + strand, within B158DRAFT_0559at 563.981 kb on + strand, within B158DRAFT_0559at 563.981 kb on + strand, within B158DRAFT_0559at 564.046 kb on - strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on + strand, within B158DRAFT_0559at 564.051 kb on - strand, within B158DRAFT_0559at 564.059 kb on - strand, within B158DRAFT_0559at 564.059 kb on - strand, within B158DRAFT_0559at 564.059 kb on - strand, within B158DRAFT_0559at 564.059 kb on - strand, within B158DRAFT_0559at 564.059 kb on - strand, within B158DRAFT_0559at 564.059 kb on - strand, within B158DRAFT_0559at 564.059 kb on - strand, within B158DRAFT_0559at 564.059 kb on - strand, within B158DRAFT_0559at 564.229 kb on - strand, within B158DRAFT_0559at 564.245 kb on - strand, within B158DRAFT_0559at 564.247 kb on - strand, within B158DRAFT_0559at 564.279 kb on + strand, within B158DRAFT_0559at 564.319 kb on - strand, within B158DRAFT_0559

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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562,606 - -0.9
562,608 + -0.7
562,616 - -0.4
562,700 + -0.4
562,816 + -0.6
562,816 + -0.6
562,841 - -0.5
562,858 - B158DRAFT_0558 0.12 -0.3
562,883 + B158DRAFT_0558 0.16 -0.1
562,891 - B158DRAFT_0558 0.18 -0.4
562,891 - B158DRAFT_0558 0.18 +1.9
562,891 - B158DRAFT_0558 0.18 -1.6
562,953 + B158DRAFT_0558 0.29 +2.4
562,958 + B158DRAFT_0558 0.30 +1.2
562,958 + B158DRAFT_0558 0.30 -0.1
562,961 - B158DRAFT_0558 0.30 -1.1
562,961 - B158DRAFT_0558 0.30 -1.3
562,988 + B158DRAFT_0558 0.35 +0.7
562,988 + B158DRAFT_0558 0.35 -0.5
562,996 - B158DRAFT_0558 0.36 -0.6
563,141 - B158DRAFT_0558 0.62 -1.4
563,176 + B158DRAFT_0558 0.68 -0.0
563,183 + B158DRAFT_0558 0.69 -0.9
563,184 - B158DRAFT_0558 0.69 +1.8
563,188 + B158DRAFT_0558 0.70 +0.3
563,188 + B158DRAFT_0558 0.70 -1.0
563,196 - B158DRAFT_0558 0.71 -1.4
563,197 - B158DRAFT_0558 0.72 +1.0
563,198 - B158DRAFT_0558 0.72 -0.6
563,214 + B158DRAFT_0558 0.75 -0.4
563,226 + B158DRAFT_0558 0.77 -0.4
563,258 + B158DRAFT_0558 0.82 -0.9
563,258 + B158DRAFT_0558 0.82 +1.3
563,258 + B158DRAFT_0558 0.82 +1.1
563,266 - B158DRAFT_0558 0.84 -0.2
563,266 - B158DRAFT_0558 0.84 -0.8
563,270 + B158DRAFT_0558 0.84 -2.0
563,270 + B158DRAFT_0558 0.84 -0.5
563,304 + -0.6
563,304 + +0.2
563,311 + -0.6
563,311 + +0.5
563,319 - -0.4
563,319 - -0.4
563,324 - +0.1
563,381 - +0.0
563,441 - -0.1
563,467 + +0.5
563,472 + -0.3
563,475 - +1.6
563,475 - +0.3
563,482 - +3.0
563,487 - -1.1
563,515 + -1.4
563,572 + +1.0
563,645 + B158DRAFT_0559 0.13 -3.3
563,776 + B158DRAFT_0559 0.20 +2.4
563,804 + B158DRAFT_0559 0.21 -1.0
563,812 - B158DRAFT_0559 0.21 -0.2
563,841 - B158DRAFT_0559 0.23 -0.2
563,843 + B158DRAFT_0559 0.23 -1.0
563,843 + B158DRAFT_0559 0.23 -0.8
563,843 + B158DRAFT_0559 0.23 -2.3
563,843 + B158DRAFT_0559 0.23 -1.9
563,851 - B158DRAFT_0559 0.23 +0.8
563,881 - B158DRAFT_0559 0.25 +0.4
563,881 - B158DRAFT_0559 0.25 -0.3
563,910 + B158DRAFT_0559 0.26 -1.4
563,981 + B158DRAFT_0559 0.30 -1.0
563,981 + B158DRAFT_0559 0.30 -0.4
563,981 + B158DRAFT_0559 0.30 -2.3
564,046 - B158DRAFT_0559 0.33 -1.3
564,051 + B158DRAFT_0559 0.33 -0.3
564,051 + B158DRAFT_0559 0.33 -1.1
564,051 + B158DRAFT_0559 0.33 -1.9
564,051 + B158DRAFT_0559 0.33 +0.0
564,051 + B158DRAFT_0559 0.33 -0.3
564,051 + B158DRAFT_0559 0.33 -0.4
564,051 + B158DRAFT_0559 0.33 -1.1
564,051 + B158DRAFT_0559 0.33 -1.2
564,051 + B158DRAFT_0559 0.33 -0.4
564,051 + B158DRAFT_0559 0.33 -1.0
564,051 - B158DRAFT_0559 0.33 -0.8
564,059 - B158DRAFT_0559 0.33 -0.8
564,059 - B158DRAFT_0559 0.33 +1.8
564,059 - B158DRAFT_0559 0.33 -0.4
564,059 - B158DRAFT_0559 0.33 +1.0
564,059 - B158DRAFT_0559 0.33 -0.2
564,059 - B158DRAFT_0559 0.33 -0.0
564,059 - B158DRAFT_0559 0.33 -0.3
564,059 - B158DRAFT_0559 0.33 +0.6
564,229 - B158DRAFT_0559 0.42 -1.3
564,245 - B158DRAFT_0559 0.42 -1.6
564,247 - B158DRAFT_0559 0.43 -1.1
564,279 + B158DRAFT_0559 0.44 -2.1
564,319 - B158DRAFT_0559 0.46 -0.9

Or see this region's nucleotide sequence