Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0447

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0445 and B158DRAFT_0446 are separated by 29 nucleotidesB158DRAFT_0446 and B158DRAFT_0447 are separated by 70 nucleotidesB158DRAFT_0447 and B158DRAFT_0448 are separated by 5 nucleotidesB158DRAFT_0448 and B158DRAFT_0449 are separated by 23 nucleotides B158DRAFT_0445: B158DRAFT_0445 - Parvulin-like peptidyl-prolyl isomerase, at 447,027 to 447,314 _0445 B158DRAFT_0446: B158DRAFT_0446 - Adenine-specific DNA methylase, at 447,344 to 448,060 _0446 B158DRAFT_0447: B158DRAFT_0447 - Pseudouridylate synthases, 23S RNA-specific, at 448,131 to 448,988 _0447 B158DRAFT_0448: B158DRAFT_0448 - Uracil-DNA glycosylase, at 448,994 to 449,590 _0448 B158DRAFT_0449: B158DRAFT_0449 - hypothetical protein, at 449,614 to 450,036 _0449 Position (kb) 448 449Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 447.135 kb on + strand, within B158DRAFT_0445at 447.135 kb on + strand, within B158DRAFT_0445at 447.136 kb on + strand, within B158DRAFT_0445at 447.143 kb on - strand, within B158DRAFT_0445at 447.143 kb on - strand, within B158DRAFT_0445at 447.277 kb on + strand, within B158DRAFT_0445at 447.291 kb on + strandat 447.299 kb on - strandat 447.299 kb on - strandat 447.330 kb on - strandat 447.381 kb on - strandat 447.447 kb on + strand, within B158DRAFT_0446at 447.476 kb on + strand, within B158DRAFT_0446at 447.484 kb on - strand, within B158DRAFT_0446at 447.484 kb on - strand, within B158DRAFT_0446at 447.511 kb on + strand, within B158DRAFT_0446at 447.628 kb on + strand, within B158DRAFT_0446at 447.646 kb on - strand, within B158DRAFT_0446at 447.688 kb on + strand, within B158DRAFT_0446at 447.693 kb on + strand, within B158DRAFT_0446at 447.738 kb on + strand, within B158DRAFT_0446at 447.764 kb on - strand, within B158DRAFT_0446at 447.793 kb on + strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.801 kb on - strand, within B158DRAFT_0446at 447.809 kb on + strand, within B158DRAFT_0446at 447.817 kb on - strand, within B158DRAFT_0446at 447.937 kb on - strand, within B158DRAFT_0446at 447.960 kb on + strand, within B158DRAFT_0446at 448.032 kb on + strandat 448.033 kb on + strandat 448.075 kb on + strandat 448.186 kb on + strandat 448.193 kb on - strandat 448.250 kb on - strand, within B158DRAFT_0447at 448.392 kb on - strand, within B158DRAFT_0447at 448.417 kb on + strand, within B158DRAFT_0447at 448.456 kb on + strand, within B158DRAFT_0447at 448.485 kb on + strand, within B158DRAFT_0447at 448.486 kb on + strand, within B158DRAFT_0447at 448.486 kb on + strand, within B158DRAFT_0447at 448.486 kb on + strand, within B158DRAFT_0447at 448.494 kb on - strand, within B158DRAFT_0447at 448.523 kb on + strand, within B158DRAFT_0447at 448.553 kb on + strand, within B158DRAFT_0447at 448.558 kb on + strand, within B158DRAFT_0447at 448.583 kb on + strand, within B158DRAFT_0447at 448.590 kb on + strand, within B158DRAFT_0447at 448.590 kb on + strand, within B158DRAFT_0447at 448.590 kb on + strand, within B158DRAFT_0447at 448.590 kb on + strand, within B158DRAFT_0447at 448.598 kb on - strand, within B158DRAFT_0447at 448.598 kb on - strand, within B158DRAFT_0447at 448.598 kb on - strand, within B158DRAFT_0447at 448.598 kb on - strand, within B158DRAFT_0447at 448.618 kb on - strand, within B158DRAFT_0447at 448.636 kb on - strand, within B158DRAFT_0447at 448.682 kb on + strand, within B158DRAFT_0447at 448.779 kb on + strand, within B158DRAFT_0447at 448.835 kb on - strand, within B158DRAFT_0447at 448.842 kb on + strand, within B158DRAFT_0447at 448.842 kb on + strand, within B158DRAFT_0447at 448.880 kb on + strand, within B158DRAFT_0447at 448.891 kb on - strand, within B158DRAFT_0447at 448.893 kb on + strand, within B158DRAFT_0447at 448.901 kb on + strand, within B158DRAFT_0447at 448.909 kb on - strandat 448.909 kb on - strandat 448.909 kb on - strandat 448.911 kb on + strandat 448.957 kb on - strandat 448.957 kb on - strandat 448.971 kb on - strandat 448.971 kb on - strandat 449.029 kb on + strandat 449.038 kb on - strandat 449.067 kb on + strand, within B158DRAFT_0448at 449.133 kb on + strand, within B158DRAFT_0448at 449.151 kb on - strand, within B158DRAFT_0448at 449.193 kb on + strand, within B158DRAFT_0448at 449.245 kb on + strand, within B158DRAFT_0448at 449.285 kb on - strand, within B158DRAFT_0448at 449.461 kb on + strand, within B158DRAFT_0448at 449.461 kb on + strand, within B158DRAFT_0448at 449.461 kb on + strand, within B158DRAFT_0448at 449.461 kb on + strand, within B158DRAFT_0448at 449.461 kb on + strand, within B158DRAFT_0448at 449.461 kb on + strand, within B158DRAFT_0448at 449.461 kb on + strand, within B158DRAFT_0448at 449.469 kb on - strand, within B158DRAFT_0448at 449.469 kb on - strand, within B158DRAFT_0448at 449.469 kb on - strand, within B158DRAFT_0448at 449.469 kb on - strand, within B158DRAFT_0448at 449.469 kb on - strand, within B158DRAFT_0448at 449.469 kb on - strand, within B158DRAFT_0448at 449.483 kb on + strand, within B158DRAFT_0448at 449.486 kb on + strand, within B158DRAFT_0448at 449.560 kb on + strandat 449.560 kb on + strandat 449.560 kb on - strandat 449.568 kb on - strandat 449.576 kb on + strandat 449.653 kb on - strandat 449.682 kb on + strand, within B158DRAFT_0449at 449.682 kb on + strand, within B158DRAFT_0449at 449.687 kb on + strand, within B158DRAFT_0449at 449.763 kb on - strand, within B158DRAFT_0449at 449.869 kb on + strand, within B158DRAFT_0449at 449.875 kb on - strand, within B158DRAFT_0449at 449.877 kb on - strand, within B158DRAFT_0449at 449.892 kb on - strand, within B158DRAFT_0449

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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447,135 + B158DRAFT_0445 0.38 -0.8
447,135 + B158DRAFT_0445 0.38 -1.7
447,136 + B158DRAFT_0445 0.38 -0.3
447,143 - B158DRAFT_0445 0.40 +0.1
447,143 - B158DRAFT_0445 0.40 -1.5
447,277 + B158DRAFT_0445 0.87 +2.0
447,291 + -1.7
447,299 - -1.3
447,299 - -1.0
447,330 - -0.4
447,381 - +0.4
447,447 + B158DRAFT_0446 0.14 -1.5
447,476 + B158DRAFT_0446 0.18 -1.4
447,484 - B158DRAFT_0446 0.20 -0.3
447,484 - B158DRAFT_0446 0.20 -0.4
447,511 + B158DRAFT_0446 0.23 -1.1
447,628 + B158DRAFT_0446 0.40 -0.5
447,646 - B158DRAFT_0446 0.42 -0.4
447,688 + B158DRAFT_0446 0.48 +0.3
447,693 + B158DRAFT_0446 0.49 -2.1
447,738 + B158DRAFT_0446 0.55 -0.5
447,764 - B158DRAFT_0446 0.59 +0.3
447,793 + B158DRAFT_0446 0.63 -1.8
447,801 - B158DRAFT_0446 0.64 -0.8
447,801 - B158DRAFT_0446 0.64 -1.1
447,801 - B158DRAFT_0446 0.64 -1.0
447,801 - B158DRAFT_0446 0.64 +1.1
447,801 - B158DRAFT_0446 0.64 +0.3
447,801 - B158DRAFT_0446 0.64 +0.6
447,801 - B158DRAFT_0446 0.64 -2.0
447,801 - B158DRAFT_0446 0.64 +0.9
447,801 - B158DRAFT_0446 0.64 -1.0
447,801 - B158DRAFT_0446 0.64 -1.4
447,809 + B158DRAFT_0446 0.65 -0.3
447,817 - B158DRAFT_0446 0.66 -0.6
447,937 - B158DRAFT_0446 0.83 -0.2
447,960 + B158DRAFT_0446 0.86 -0.2
448,032 + +0.4
448,033 + -0.8
448,075 + +1.4
448,186 + -0.2
448,193 - +0.4
448,250 - B158DRAFT_0447 0.14 -0.6
448,392 - B158DRAFT_0447 0.30 -0.2
448,417 + B158DRAFT_0447 0.33 -0.3
448,456 + B158DRAFT_0447 0.38 -0.6
448,485 + B158DRAFT_0447 0.41 +0.9
448,486 + B158DRAFT_0447 0.41 +0.1
448,486 + B158DRAFT_0447 0.41 -1.2
448,486 + B158DRAFT_0447 0.41 -0.8
448,494 - B158DRAFT_0447 0.42 -2.3
448,523 + B158DRAFT_0447 0.46 +0.9
448,553 + B158DRAFT_0447 0.49 -0.6
448,558 + B158DRAFT_0447 0.50 -0.8
448,583 + B158DRAFT_0447 0.53 -0.3
448,590 + B158DRAFT_0447 0.53 -1.8
448,590 + B158DRAFT_0447 0.53 -0.2
448,590 + B158DRAFT_0447 0.53 -1.8
448,590 + B158DRAFT_0447 0.53 -0.5
448,598 - B158DRAFT_0447 0.54 +0.1
448,598 - B158DRAFT_0447 0.54 -2.4
448,598 - B158DRAFT_0447 0.54 +1.3
448,598 - B158DRAFT_0447 0.54 -1.8
448,618 - B158DRAFT_0447 0.57 +0.3
448,636 - B158DRAFT_0447 0.59 +0.6
448,682 + B158DRAFT_0447 0.64 +1.4
448,779 + B158DRAFT_0447 0.76 +0.2
448,835 - B158DRAFT_0447 0.82 -1.8
448,842 + B158DRAFT_0447 0.83 -1.3
448,842 + B158DRAFT_0447 0.83 +1.1
448,880 + B158DRAFT_0447 0.87 +0.8
448,891 - B158DRAFT_0447 0.89 +1.1
448,893 + B158DRAFT_0447 0.89 +1.5
448,901 + B158DRAFT_0447 0.90 +0.2
448,909 - -0.1
448,909 - +0.0
448,909 - -1.2
448,911 + +0.1
448,957 - -0.9
448,957 - -0.7
448,971 - +1.1
448,971 - -0.4
449,029 + -1.0
449,038 - +1.4
449,067 + B158DRAFT_0448 0.12 -1.2
449,133 + B158DRAFT_0448 0.23 -0.6
449,151 - B158DRAFT_0448 0.26 -0.4
449,193 + B158DRAFT_0448 0.33 +5.8
449,245 + B158DRAFT_0448 0.42 +1.5
449,285 - B158DRAFT_0448 0.49 +1.6
449,461 + B158DRAFT_0448 0.78 -0.5
449,461 + B158DRAFT_0448 0.78 +1.9
449,461 + B158DRAFT_0448 0.78 -1.8
449,461 + B158DRAFT_0448 0.78 -1.2
449,461 + B158DRAFT_0448 0.78 -1.5
449,461 + B158DRAFT_0448 0.78 +2.0
449,461 + B158DRAFT_0448 0.78 -0.1
449,469 - B158DRAFT_0448 0.80 -1.2
449,469 - B158DRAFT_0448 0.80 +0.8
449,469 - B158DRAFT_0448 0.80 +0.4
449,469 - B158DRAFT_0448 0.80 +0.4
449,469 - B158DRAFT_0448 0.80 -1.7
449,469 - B158DRAFT_0448 0.80 -0.4
449,483 + B158DRAFT_0448 0.82 -0.1
449,486 + B158DRAFT_0448 0.82 +0.2
449,560 + +0.1
449,560 + -1.4
449,560 - -0.8
449,568 - +0.2
449,576 + +1.7
449,653 - -1.1
449,682 + B158DRAFT_0449 0.16 +0.3
449,682 + B158DRAFT_0449 0.16 -0.5
449,687 + B158DRAFT_0449 0.17 -0.2
449,763 - B158DRAFT_0449 0.35 +0.7
449,869 + B158DRAFT_0449 0.60 -0.8
449,875 - B158DRAFT_0449 0.62 +0.7
449,877 - B158DRAFT_0449 0.62 +0.2
449,892 - B158DRAFT_0449 0.66 +0.0

Or see this region's nucleotide sequence