Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0239

Experiment: m.b. copper (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0238 and B158DRAFT_0239 are separated by 56 nucleotidesB158DRAFT_0239 and B158DRAFT_0240 are separated by 48 nucleotides B158DRAFT_0238: B158DRAFT_0238 - Superfamily I DNA and RNA helicases, at 246,439 to 248,619 _0238 B158DRAFT_0239: B158DRAFT_0239 - 2-keto-4-pentenoate hydratase, at 248,676 to 249,440 _0239 B158DRAFT_0240: B158DRAFT_0240 - Lactate dehydrogenase and related dehydrogenases, at 249,489 to 250,442 _0240 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 247.684 kb on + strand, within B158DRAFT_0238at 247.707 kb on - strand, within B158DRAFT_0238at 247.745 kb on + strand, within B158DRAFT_0238at 247.745 kb on + strand, within B158DRAFT_0238at 247.756 kb on + strand, within B158DRAFT_0238at 247.756 kb on + strand, within B158DRAFT_0238at 247.756 kb on + strand, within B158DRAFT_0238at 247.756 kb on + strand, within B158DRAFT_0238at 247.764 kb on - strand, within B158DRAFT_0238at 247.764 kb on - strand, within B158DRAFT_0238at 247.764 kb on - strand, within B158DRAFT_0238at 247.782 kb on - strand, within B158DRAFT_0238at 247.782 kb on - strand, within B158DRAFT_0238at 247.832 kb on - strand, within B158DRAFT_0238at 247.845 kb on + strand, within B158DRAFT_0238at 247.917 kb on + strand, within B158DRAFT_0238at 247.965 kb on + strand, within B158DRAFT_0238at 248.025 kb on + strand, within B158DRAFT_0238at 248.025 kb on + strand, within B158DRAFT_0238at 248.025 kb on + strand, within B158DRAFT_0238at 248.025 kb on + strand, within B158DRAFT_0238at 248.025 kb on + strand, within B158DRAFT_0238at 248.033 kb on - strand, within B158DRAFT_0238at 248.033 kb on - strand, within B158DRAFT_0238at 248.033 kb on - strand, within B158DRAFT_0238at 248.033 kb on - strand, within B158DRAFT_0238at 248.101 kb on - strand, within B158DRAFT_0238at 248.220 kb on + strand, within B158DRAFT_0238at 248.234 kb on - strand, within B158DRAFT_0238at 248.264 kb on - strand, within B158DRAFT_0238at 248.291 kb on + strand, within B158DRAFT_0238at 248.291 kb on - strand, within B158DRAFT_0238at 248.299 kb on - strand, within B158DRAFT_0238at 248.301 kb on + strand, within B158DRAFT_0238at 248.301 kb on + strand, within B158DRAFT_0238at 248.309 kb on - strand, within B158DRAFT_0238at 248.309 kb on - strand, within B158DRAFT_0238at 248.309 kb on - strand, within B158DRAFT_0238at 248.309 kb on - strand, within B158DRAFT_0238at 248.309 kb on - strand, within B158DRAFT_0238at 248.309 kb on - strand, within B158DRAFT_0238at 248.309 kb on - strand, within B158DRAFT_0238at 248.354 kb on + strand, within B158DRAFT_0238at 248.354 kb on - strand, within B158DRAFT_0238at 248.436 kb on + strandat 248.445 kb on - strandat 248.468 kb on + strandat 248.468 kb on + strandat 248.468 kb on + strandat 248.478 kb on + strandat 248.489 kb on + strandat 248.536 kb on - strandat 248.557 kb on - strandat 248.557 kb on - strandat 248.578 kb on - strandat 248.598 kb on + strandat 248.606 kb on - strandat 248.608 kb on + strandat 248.624 kb on - strandat 248.695 kb on + strandat 248.695 kb on + strandat 248.703 kb on - strandat 248.845 kb on - strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.855 kb on - strand, within B158DRAFT_0239at 248.855 kb on - strand, within B158DRAFT_0239at 248.855 kb on - strand, within B158DRAFT_0239at 248.875 kb on + strand, within B158DRAFT_0239at 248.954 kb on - strand, within B158DRAFT_0239at 248.960 kb on + strand, within B158DRAFT_0239at 249.025 kb on + strand, within B158DRAFT_0239at 249.025 kb on + strand, within B158DRAFT_0239at 249.025 kb on + strand, within B158DRAFT_0239at 249.025 kb on + strand, within B158DRAFT_0239at 249.027 kb on + strand, within B158DRAFT_0239at 249.084 kb on - strand, within B158DRAFT_0239at 249.117 kb on + strand, within B158DRAFT_0239at 249.139 kb on - strand, within B158DRAFT_0239at 249.170 kb on - strand, within B158DRAFT_0239at 249.183 kb on - strand, within B158DRAFT_0239at 249.213 kb on - strand, within B158DRAFT_0239at 249.213 kb on - strand, within B158DRAFT_0239at 249.243 kb on + strand, within B158DRAFT_0239at 249.365 kb on + strandat 249.384 kb on + strandat 249.392 kb on - strandat 249.402 kb on - strandat 249.506 kb on - strandat 249.578 kb on - strandat 249.583 kb on + strandat 249.583 kb on + strandat 249.592 kb on + strand, within B158DRAFT_0240at 249.592 kb on + strand, within B158DRAFT_0240at 249.600 kb on - strand, within B158DRAFT_0240at 249.606 kb on + strand, within B158DRAFT_0240at 249.610 kb on - strand, within B158DRAFT_0240at 249.611 kb on + strand, within B158DRAFT_0240at 249.611 kb on + strand, within B158DRAFT_0240at 249.611 kb on + strand, within B158DRAFT_0240at 249.611 kb on + strand, within B158DRAFT_0240at 249.614 kb on - strand, within B158DRAFT_0240at 249.616 kb on + strand, within B158DRAFT_0240at 249.616 kb on + strand, within B158DRAFT_0240at 249.619 kb on - strand, within B158DRAFT_0240at 249.619 kb on - strand, within B158DRAFT_0240at 249.628 kb on + strand, within B158DRAFT_0240at 249.628 kb on + strand, within B158DRAFT_0240at 249.699 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.780 kb on + strand, within B158DRAFT_0240at 249.818 kb on - strand, within B158DRAFT_0240at 249.961 kb on + strand, within B158DRAFT_0240at 249.968 kb on - strand, within B158DRAFT_0240at 249.976 kb on + strand, within B158DRAFT_0240at 250.025 kb on - strand, within B158DRAFT_0240at 250.080 kb on + strand, within B158DRAFT_0240at 250.080 kb on + strand, within B158DRAFT_0240at 250.088 kb on - strand, within B158DRAFT_0240at 250.090 kb on + strand, within B158DRAFT_0240at 250.092 kb on + strand, within B158DRAFT_0240at 250.100 kb on - strand, within B158DRAFT_0240at 250.101 kb on - strand, within B158DRAFT_0240at 250.230 kb on + strand, within B158DRAFT_0240at 250.244 kb on - strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.340 kb on + strand, within B158DRAFT_0240at 250.346 kb on - strand, within B158DRAFT_0240at 250.354 kb on - strandat 250.368 kb on + strandat 250.406 kb on + strandat 250.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.625 mM
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247,684 + B158DRAFT_0238 0.57 -0.0
247,707 - B158DRAFT_0238 0.58 -0.7
247,745 + B158DRAFT_0238 0.60 +1.1
247,745 + B158DRAFT_0238 0.60 +1.6
247,756 + B158DRAFT_0238 0.60 -0.5
247,756 + B158DRAFT_0238 0.60 -0.4
247,756 + B158DRAFT_0238 0.60 +0.9
247,756 + B158DRAFT_0238 0.60 -0.5
247,764 - B158DRAFT_0238 0.61 -1.2
247,764 - B158DRAFT_0238 0.61 +1.0
247,764 - B158DRAFT_0238 0.61 +0.6
247,782 - B158DRAFT_0238 0.62 +0.2
247,782 - B158DRAFT_0238 0.62 -0.3
247,832 - B158DRAFT_0238 0.64 +0.5
247,845 + B158DRAFT_0238 0.64 +0.6
247,917 + B158DRAFT_0238 0.68 -0.0
247,965 + B158DRAFT_0238 0.70 +0.2
248,025 + B158DRAFT_0238 0.73 -0.2
248,025 + B158DRAFT_0238 0.73 +0.9
248,025 + B158DRAFT_0238 0.73 +0.2
248,025 + B158DRAFT_0238 0.73 -0.8
248,025 + B158DRAFT_0238 0.73 -0.6
248,033 - B158DRAFT_0238 0.73 +0.8
248,033 - B158DRAFT_0238 0.73 +2.7
248,033 - B158DRAFT_0238 0.73 +1.9
248,033 - B158DRAFT_0238 0.73 +0.6
248,101 - B158DRAFT_0238 0.76 -0.3
248,220 + B158DRAFT_0238 0.82 +1.6
248,234 - B158DRAFT_0238 0.82 -1.2
248,264 - B158DRAFT_0238 0.84 -0.4
248,291 + B158DRAFT_0238 0.85 +0.5
248,291 - B158DRAFT_0238 0.85 -0.4
248,299 - B158DRAFT_0238 0.85 -1.5
248,301 + B158DRAFT_0238 0.85 +0.8
248,301 + B158DRAFT_0238 0.85 +2.4
248,309 - B158DRAFT_0238 0.86 -2.0
248,309 - B158DRAFT_0238 0.86 +2.1
248,309 - B158DRAFT_0238 0.86 -1.6
248,309 - B158DRAFT_0238 0.86 -2.1
248,309 - B158DRAFT_0238 0.86 -0.8
248,309 - B158DRAFT_0238 0.86 +0.5
248,309 - B158DRAFT_0238 0.86 +1.9
248,354 + B158DRAFT_0238 0.88 -0.3
248,354 - B158DRAFT_0238 0.88 -1.7
248,436 + +1.5
248,445 - -0.1
248,468 + +1.2
248,468 + +1.0
248,468 + +0.9
248,478 + +0.2
248,489 + +1.8
248,536 - -0.2
248,557 - +0.2
248,557 - +0.8
248,578 - -0.3
248,598 + -0.4
248,606 - -0.8
248,608 + +0.6
248,624 - -0.4
248,695 + +2.0
248,695 + -1.2
248,703 - +0.7
248,845 - B158DRAFT_0239 0.22 +1.0
248,847 + B158DRAFT_0239 0.22 -1.5
248,847 + B158DRAFT_0239 0.22 -0.3
248,847 + B158DRAFT_0239 0.22 +0.5
248,847 + B158DRAFT_0239 0.22 -0.1
248,847 + B158DRAFT_0239 0.22 -1.5
248,855 - B158DRAFT_0239 0.23 -0.1
248,855 - B158DRAFT_0239 0.23 -0.9
248,855 - B158DRAFT_0239 0.23 -0.1
248,875 + B158DRAFT_0239 0.26 -2.0
248,954 - B158DRAFT_0239 0.36 -1.5
248,960 + B158DRAFT_0239 0.37 -0.4
249,025 + B158DRAFT_0239 0.46 -0.4
249,025 + B158DRAFT_0239 0.46 -0.1
249,025 + B158DRAFT_0239 0.46 -0.6
249,025 + B158DRAFT_0239 0.46 -1.2
249,027 + B158DRAFT_0239 0.46 -0.5
249,084 - B158DRAFT_0239 0.53 -0.5
249,117 + B158DRAFT_0239 0.58 +0.3
249,139 - B158DRAFT_0239 0.61 -0.1
249,170 - B158DRAFT_0239 0.65 +3.0
249,183 - B158DRAFT_0239 0.66 -2.5
249,213 - B158DRAFT_0239 0.70 +0.3
249,213 - B158DRAFT_0239 0.70 +0.5
249,243 + B158DRAFT_0239 0.74 -0.6
249,365 + -0.8
249,384 + +1.9
249,392 - -1.4
249,402 - -0.8
249,506 - +0.4
249,578 - +0.7
249,583 + -1.0
249,583 + -2.1
249,592 + B158DRAFT_0240 0.11 +1.4
249,592 + B158DRAFT_0240 0.11 -1.1
249,600 - B158DRAFT_0240 0.12 -0.1
249,606 + B158DRAFT_0240 0.12 +1.0
249,610 - B158DRAFT_0240 0.13 -0.9
249,611 + B158DRAFT_0240 0.13 -0.7
249,611 + B158DRAFT_0240 0.13 +3.9
249,611 + B158DRAFT_0240 0.13 -0.3
249,611 + B158DRAFT_0240 0.13 +0.6
249,614 - B158DRAFT_0240 0.13 +0.7
249,616 + B158DRAFT_0240 0.13 -0.7
249,616 + B158DRAFT_0240 0.13 -0.6
249,619 - B158DRAFT_0240 0.14 +0.5
249,619 - B158DRAFT_0240 0.14 -2.1
249,628 + B158DRAFT_0240 0.15 +0.4
249,628 + B158DRAFT_0240 0.15 +0.5
249,699 + B158DRAFT_0240 0.22 +0.5
249,710 + B158DRAFT_0240 0.23 -0.1
249,710 + B158DRAFT_0240 0.23 -0.7
249,710 + B158DRAFT_0240 0.23 -0.0
249,710 + B158DRAFT_0240 0.23 -0.5
249,710 + B158DRAFT_0240 0.23 -0.9
249,718 - B158DRAFT_0240 0.24 -1.8
249,718 - B158DRAFT_0240 0.24 -1.6
249,718 - B158DRAFT_0240 0.24 -1.0
249,718 - B158DRAFT_0240 0.24 -0.3
249,718 - B158DRAFT_0240 0.24 -2.0
249,718 - B158DRAFT_0240 0.24 +0.2
249,718 - B158DRAFT_0240 0.24 +0.2
249,780 + B158DRAFT_0240 0.31 -0.7
249,818 - B158DRAFT_0240 0.34 -0.4
249,961 + B158DRAFT_0240 0.49 +1.6
249,968 - B158DRAFT_0240 0.50 -1.7
249,976 + B158DRAFT_0240 0.51 +1.2
250,025 - B158DRAFT_0240 0.56 +0.9
250,080 + B158DRAFT_0240 0.62 -0.9
250,080 + B158DRAFT_0240 0.62 -1.5
250,088 - B158DRAFT_0240 0.63 +0.5
250,090 + B158DRAFT_0240 0.63 -0.1
250,092 + B158DRAFT_0240 0.63 -2.2
250,100 - B158DRAFT_0240 0.64 -0.3
250,101 - B158DRAFT_0240 0.64 -1.5
250,230 + B158DRAFT_0240 0.78 -0.0
250,244 - B158DRAFT_0240 0.79 +1.0
250,304 + B158DRAFT_0240 0.85 -0.2
250,304 + B158DRAFT_0240 0.85 -0.0
250,304 + B158DRAFT_0240 0.85 +0.2
250,304 + B158DRAFT_0240 0.85 +1.9
250,340 + B158DRAFT_0240 0.89 +1.1
250,346 - B158DRAFT_0240 0.90 -0.4
250,354 - -1.4
250,368 + +1.0
250,406 + -1.8
250,421 - -0.6

Or see this region's nucleotide sequence