Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1998

Experiment: m.b. perchlorate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1997 and B158DRAFT_1998 are separated by 166 nucleotidesB158DRAFT_1998 and B158DRAFT_1999 are separated by 8 nucleotidesB158DRAFT_1999 and B158DRAFT_2000 are separated by 2 nucleotides B158DRAFT_1997: B158DRAFT_1997 - aspartate-ammonia ligase (EC 6.3.1.1), at 133,144 to 134,136 _1997 B158DRAFT_1998: B158DRAFT_1998 - Transcriptional regulators, at 134,303 to 134,773 _1998 B158DRAFT_1999: B158DRAFT_1999 - prepilin-type N-terminal cleavage/methylation domain, at 134,782 to 135,261 _1999 B158DRAFT_2000: B158DRAFT_2000 - Type II secretory pathway, component PulF, at 135,264 to 136,244 _2000 Position (kb) 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 133.419 kb on + strand, within B158DRAFT_1997at 133.427 kb on - strand, within B158DRAFT_1997at 133.427 kb on - strand, within B158DRAFT_1997at 133.429 kb on + strand, within B158DRAFT_1997at 133.462 kb on + strand, within B158DRAFT_1997at 133.598 kb on - strand, within B158DRAFT_1997at 134.369 kb on + strand, within B158DRAFT_1998at 134.377 kb on - strand, within B158DRAFT_1998at 134.377 kb on - strand, within B158DRAFT_1998at 134.507 kb on - strand, within B158DRAFT_1998at 134.612 kb on + strand, within B158DRAFT_1998at 134.620 kb on - strand, within B158DRAFT_1998at 134.620 kb on - strand, within B158DRAFT_1998at 134.632 kb on - strand, within B158DRAFT_1998at 134.822 kb on + strandat 134.849 kb on + strand, within B158DRAFT_1999at 134.850 kb on - strand, within B158DRAFT_1999at 134.850 kb on - strand, within B158DRAFT_1999at 134.883 kb on + strand, within B158DRAFT_1999at 134.891 kb on - strand, within B158DRAFT_1999at 134.926 kb on + strand, within B158DRAFT_1999at 134.927 kb on + strand, within B158DRAFT_1999at 134.934 kb on - strand, within B158DRAFT_1999at 134.935 kb on - strand, within B158DRAFT_1999at 134.940 kb on - strand, within B158DRAFT_1999at 134.960 kb on + strand, within B158DRAFT_1999at 134.968 kb on - strand, within B158DRAFT_1999at 134.970 kb on + strand, within B158DRAFT_1999at 135.027 kb on - strand, within B158DRAFT_1999at 135.030 kb on + strand, within B158DRAFT_1999at 135.035 kb on + strand, within B158DRAFT_1999at 135.035 kb on + strand, within B158DRAFT_1999at 135.035 kb on + strand, within B158DRAFT_1999at 135.042 kb on - strand, within B158DRAFT_1999at 135.042 kb on - strand, within B158DRAFT_1999at 135.043 kb on - strand, within B158DRAFT_1999at 135.043 kb on - strand, within B158DRAFT_1999at 135.043 kb on - strand, within B158DRAFT_1999at 135.043 kb on - strand, within B158DRAFT_1999at 135.106 kb on + strand, within B158DRAFT_1999at 135.114 kb on - strand, within B158DRAFT_1999at 135.114 kb on - strand, within B158DRAFT_1999at 135.114 kb on - strand, within B158DRAFT_1999at 135.114 kb on - strand, within B158DRAFT_1999at 135.116 kb on + strand, within B158DRAFT_1999at 135.121 kb on + strand, within B158DRAFT_1999at 135.129 kb on - strand, within B158DRAFT_1999at 135.129 kb on - strand, within B158DRAFT_1999at 135.129 kb on - strand, within B158DRAFT_1999at 135.158 kb on + strand, within B158DRAFT_1999at 135.166 kb on - strand, within B158DRAFT_1999at 135.166 kb on - strand, within B158DRAFT_1999at 135.224 kb on + strandat 135.227 kb on - strandat 135.242 kb on - strandat 135.242 kb on - strandat 135.243 kb on + strandat 135.336 kb on - strandat 135.383 kb on + strand, within B158DRAFT_2000at 135.419 kb on - strand, within B158DRAFT_2000at 135.419 kb on - strand, within B158DRAFT_2000at 135.438 kb on + strand, within B158DRAFT_2000at 135.438 kb on + strand, within B158DRAFT_2000at 135.438 kb on + strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.446 kb on - strand, within B158DRAFT_2000at 135.517 kb on - strand, within B158DRAFT_2000at 135.564 kb on - strand, within B158DRAFT_2000at 135.613 kb on + strand, within B158DRAFT_2000at 135.613 kb on + strand, within B158DRAFT_2000at 135.621 kb on - strand, within B158DRAFT_2000at 135.651 kb on - strand, within B158DRAFT_2000at 135.679 kb on - strand, within B158DRAFT_2000at 135.681 kb on - strand, within B158DRAFT_2000at 135.681 kb on - strand, within B158DRAFT_2000at 135.681 kb on - strand, within B158DRAFT_2000at 135.703 kb on + strand, within B158DRAFT_2000at 135.703 kb on + strand, within B158DRAFT_2000

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 150 mM
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133,419 + B158DRAFT_1997 0.28 -0.2
133,427 - B158DRAFT_1997 0.28 -0.5
133,427 - B158DRAFT_1997 0.28 -0.5
133,429 + B158DRAFT_1997 0.29 +0.2
133,462 + B158DRAFT_1997 0.32 -0.8
133,598 - B158DRAFT_1997 0.46 -0.2
134,369 + B158DRAFT_1998 0.14 +0.5
134,377 - B158DRAFT_1998 0.16 -1.3
134,377 - B158DRAFT_1998 0.16 +2.6
134,507 - B158DRAFT_1998 0.43 -1.7
134,612 + B158DRAFT_1998 0.66 +1.0
134,620 - B158DRAFT_1998 0.67 +0.0
134,620 - B158DRAFT_1998 0.67 +0.0
134,632 - B158DRAFT_1998 0.70 -0.5
134,822 + -0.5
134,849 + B158DRAFT_1999 0.14 +0.3
134,850 - B158DRAFT_1999 0.14 +0.4
134,850 - B158DRAFT_1999 0.14 -0.1
134,883 + B158DRAFT_1999 0.21 +0.1
134,891 - B158DRAFT_1999 0.23 +1.1
134,926 + B158DRAFT_1999 0.30 -0.1
134,927 + B158DRAFT_1999 0.30 +1.5
134,934 - B158DRAFT_1999 0.32 -0.9
134,935 - B158DRAFT_1999 0.32 -0.5
134,940 - B158DRAFT_1999 0.33 -0.5
134,960 + B158DRAFT_1999 0.37 -0.9
134,968 - B158DRAFT_1999 0.39 -0.8
134,970 + B158DRAFT_1999 0.39 +1.0
135,027 - B158DRAFT_1999 0.51 -0.2
135,030 + B158DRAFT_1999 0.52 -0.5
135,035 + B158DRAFT_1999 0.53 -0.6
135,035 + B158DRAFT_1999 0.53 -1.1
135,035 + B158DRAFT_1999 0.53 -0.6
135,042 - B158DRAFT_1999 0.54 -0.2
135,042 - B158DRAFT_1999 0.54 -0.0
135,043 - B158DRAFT_1999 0.54 -0.4
135,043 - B158DRAFT_1999 0.54 -0.2
135,043 - B158DRAFT_1999 0.54 -2.0
135,043 - B158DRAFT_1999 0.54 -0.3
135,106 + B158DRAFT_1999 0.68 +1.0
135,114 - B158DRAFT_1999 0.69 -0.7
135,114 - B158DRAFT_1999 0.69 +0.8
135,114 - B158DRAFT_1999 0.69 -0.9
135,114 - B158DRAFT_1999 0.69 +0.4
135,116 + B158DRAFT_1999 0.70 -0.5
135,121 + B158DRAFT_1999 0.71 -0.5
135,129 - B158DRAFT_1999 0.72 -1.2
135,129 - B158DRAFT_1999 0.72 -0.3
135,129 - B158DRAFT_1999 0.72 +0.3
135,158 + B158DRAFT_1999 0.78 +0.7
135,166 - B158DRAFT_1999 0.80 -1.4
135,166 - B158DRAFT_1999 0.80 -0.5
135,224 + -1.3
135,227 - -0.1
135,242 - +0.3
135,242 - -0.2
135,243 + -0.1
135,336 - +2.6
135,383 + B158DRAFT_2000 0.12 -0.3
135,419 - B158DRAFT_2000 0.16 -0.3
135,419 - B158DRAFT_2000 0.16 -0.5
135,438 + B158DRAFT_2000 0.18 -1.1
135,438 + B158DRAFT_2000 0.18 -0.5
135,438 + B158DRAFT_2000 0.18 -0.0
135,446 - B158DRAFT_2000 0.19 -1.6
135,446 - B158DRAFT_2000 0.19 +0.0
135,446 - B158DRAFT_2000 0.19 +0.5
135,446 - B158DRAFT_2000 0.19 -1.0
135,446 - B158DRAFT_2000 0.19 -1.0
135,446 - B158DRAFT_2000 0.19 +0.1
135,517 - B158DRAFT_2000 0.26 -0.9
135,564 - B158DRAFT_2000 0.31 -0.5
135,613 + B158DRAFT_2000 0.36 +0.3
135,613 + B158DRAFT_2000 0.36 -0.8
135,621 - B158DRAFT_2000 0.36 -0.0
135,651 - B158DRAFT_2000 0.39 -0.4
135,679 - B158DRAFT_2000 0.42 -0.3
135,681 - B158DRAFT_2000 0.43 -0.8
135,681 - B158DRAFT_2000 0.43 -1.4
135,681 - B158DRAFT_2000 0.43 -0.8
135,703 + B158DRAFT_2000 0.45 -0.6
135,703 + B158DRAFT_2000 0.45 -0.3

Or see this region's nucleotide sequence