Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0949

Experiment: m.b. perchlorate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0948 and B158DRAFT_0949 overlap by 4 nucleotidesB158DRAFT_0949 and B158DRAFT_0950 are separated by 1 nucleotidesB158DRAFT_0950 and B158DRAFT_0951 are separated by 17 nucleotides B158DRAFT_0948: B158DRAFT_0948 - RND family efflux transporter, MFP subunit, at 976,116 to 977,297 _0948 B158DRAFT_0949: B158DRAFT_0949 - ABC-type transport system, involved in lipoprotein release, permease component, at 977,294 to 978,496 _0949 B158DRAFT_0950: B158DRAFT_0950 - ABC-type antimicrobial peptide transport system, ATPase component, at 978,498 to 979,211 _0950 B158DRAFT_0951: B158DRAFT_0951 - Cytochrome C', at 979,229 to 979,708 _0951 Position (kb) 977 978 979Strain fitness (log2 ratio) -2 -1 0 1at 976.427 kb on + strand, within B158DRAFT_0948at 976.441 kb on + strand, within B158DRAFT_0948at 976.441 kb on + strand, within B158DRAFT_0948at 976.441 kb on + strand, within B158DRAFT_0948at 976.441 kb on + strand, within B158DRAFT_0948at 976.473 kb on + strand, within B158DRAFT_0948at 976.629 kb on + strand, within B158DRAFT_0948at 976.629 kb on + strand, within B158DRAFT_0948at 976.637 kb on - strand, within B158DRAFT_0948at 976.710 kb on - strand, within B158DRAFT_0948at 976.742 kb on + strand, within B158DRAFT_0948at 976.750 kb on - strand, within B158DRAFT_0948at 976.828 kb on + strand, within B158DRAFT_0948at 976.851 kb on + strand, within B158DRAFT_0948at 976.851 kb on + strand, within B158DRAFT_0948at 976.859 kb on - strand, within B158DRAFT_0948at 976.860 kb on - strand, within B158DRAFT_0948at 976.860 kb on - strand, within B158DRAFT_0948at 976.998 kb on + strand, within B158DRAFT_0948at 976.998 kb on + strand, within B158DRAFT_0948at 977.090 kb on + strand, within B158DRAFT_0948at 977.150 kb on - strand, within B158DRAFT_0948at 977.166 kb on + strand, within B158DRAFT_0948at 977.174 kb on - strand, within B158DRAFT_0948at 977.184 kb on - strandat 977.220 kb on + strandat 977.228 kb on - strandat 977.284 kb on - strandat 977.301 kb on + strandat 977.324 kb on - strandat 977.326 kb on + strandat 977.334 kb on - strandat 977.357 kb on + strandat 977.429 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.455 kb on + strand, within B158DRAFT_0949at 977.463 kb on - strand, within B158DRAFT_0949at 977.463 kb on - strand, within B158DRAFT_0949at 977.463 kb on - strand, within B158DRAFT_0949at 977.463 kb on - strand, within B158DRAFT_0949at 977.539 kb on - strand, within B158DRAFT_0949at 977.542 kb on + strand, within B158DRAFT_0949at 977.550 kb on - strand, within B158DRAFT_0949at 977.590 kb on - strand, within B158DRAFT_0949at 977.592 kb on + strand, within B158DRAFT_0949at 977.592 kb on + strand, within B158DRAFT_0949at 977.594 kb on + strand, within B158DRAFT_0949at 977.651 kb on - strand, within B158DRAFT_0949at 977.656 kb on - strand, within B158DRAFT_0949at 977.743 kb on + strand, within B158DRAFT_0949at 977.780 kb on - strand, within B158DRAFT_0949at 977.799 kb on + strand, within B158DRAFT_0949at 977.858 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.957 kb on + strand, within B158DRAFT_0949at 977.965 kb on - strand, within B158DRAFT_0949at 977.965 kb on - strand, within B158DRAFT_0949at 978.018 kb on - strand, within B158DRAFT_0949at 978.167 kb on + strand, within B158DRAFT_0949at 978.169 kb on + strand, within B158DRAFT_0949at 978.299 kb on - strand, within B158DRAFT_0949at 978.315 kb on + strand, within B158DRAFT_0949at 978.393 kb on - strandat 978.448 kb on + strandat 978.448 kb on + strandat 978.456 kb on - strandat 978.492 kb on + strandat 978.492 kb on + strandat 978.500 kb on - strandat 978.590 kb on + strand, within B158DRAFT_0950at 978.625 kb on - strand, within B158DRAFT_0950at 978.658 kb on + strand, within B158DRAFT_0950at 978.906 kb on + strand, within B158DRAFT_0950at 978.906 kb on + strand, within B158DRAFT_0950at 978.911 kb on + strand, within B158DRAFT_0950at 978.925 kb on - strand, within B158DRAFT_0950at 978.956 kb on + strand, within B158DRAFT_0950at 979.018 kb on + strand, within B158DRAFT_0950at 979.045 kb on + strand, within B158DRAFT_0950at 979.193 kb on - strandat 979.198 kb on - strandat 979.198 kb on - strandat 979.225 kb on - strandat 979.320 kb on - strand, within B158DRAFT_0951

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 150 mM
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976,427 + B158DRAFT_0948 0.26 -1.4
976,441 + B158DRAFT_0948 0.27 -0.1
976,441 + B158DRAFT_0948 0.27 -1.3
976,441 + B158DRAFT_0948 0.27 -0.6
976,441 + B158DRAFT_0948 0.27 +0.6
976,473 + B158DRAFT_0948 0.30 +0.7
976,629 + B158DRAFT_0948 0.43 -0.8
976,629 + B158DRAFT_0948 0.43 +0.8
976,637 - B158DRAFT_0948 0.44 -0.3
976,710 - B158DRAFT_0948 0.50 +0.1
976,742 + B158DRAFT_0948 0.53 -0.3
976,750 - B158DRAFT_0948 0.54 -0.3
976,828 + B158DRAFT_0948 0.60 -0.3
976,851 + B158DRAFT_0948 0.62 -0.6
976,851 + B158DRAFT_0948 0.62 +0.0
976,859 - B158DRAFT_0948 0.63 -0.4
976,860 - B158DRAFT_0948 0.63 -0.6
976,860 - B158DRAFT_0948 0.63 -0.7
976,998 + B158DRAFT_0948 0.75 -0.5
976,998 + B158DRAFT_0948 0.75 -0.8
977,090 + B158DRAFT_0948 0.82 -0.7
977,150 - B158DRAFT_0948 0.87 -0.2
977,166 + B158DRAFT_0948 0.89 -0.1
977,174 - B158DRAFT_0948 0.90 -0.0
977,184 - +0.6
977,220 + -0.1
977,228 - -0.2
977,284 - +0.1
977,301 + -2.1
977,324 - +0.8
977,326 + -0.8
977,334 - +0.2
977,357 + -0.8
977,429 + B158DRAFT_0949 0.11 -0.5
977,455 + B158DRAFT_0949 0.13 -0.0
977,455 + B158DRAFT_0949 0.13 -0.2
977,455 + B158DRAFT_0949 0.13 +0.6
977,455 + B158DRAFT_0949 0.13 -0.8
977,455 + B158DRAFT_0949 0.13 -0.4
977,455 + B158DRAFT_0949 0.13 +0.3
977,455 + B158DRAFT_0949 0.13 +0.6
977,463 - B158DRAFT_0949 0.14 -0.6
977,463 - B158DRAFT_0949 0.14 -1.4
977,463 - B158DRAFT_0949 0.14 -0.1
977,463 - B158DRAFT_0949 0.14 -1.3
977,539 - B158DRAFT_0949 0.20 +0.5
977,542 + B158DRAFT_0949 0.21 -1.4
977,550 - B158DRAFT_0949 0.21 +0.5
977,590 - B158DRAFT_0949 0.25 -0.2
977,592 + B158DRAFT_0949 0.25 -1.3
977,592 + B158DRAFT_0949 0.25 -0.2
977,594 + B158DRAFT_0949 0.25 -1.3
977,651 - B158DRAFT_0949 0.30 -0.9
977,656 - B158DRAFT_0949 0.30 -0.6
977,743 + B158DRAFT_0949 0.37 -0.1
977,780 - B158DRAFT_0949 0.40 -1.9
977,799 + B158DRAFT_0949 0.42 +0.1
977,858 + B158DRAFT_0949 0.47 -0.3
977,957 + B158DRAFT_0949 0.55 -0.3
977,957 + B158DRAFT_0949 0.55 -1.2
977,957 + B158DRAFT_0949 0.55 -0.9
977,957 + B158DRAFT_0949 0.55 -0.0
977,957 + B158DRAFT_0949 0.55 -1.7
977,957 + B158DRAFT_0949 0.55 +0.1
977,965 - B158DRAFT_0949 0.56 +0.3
977,965 - B158DRAFT_0949 0.56 +0.4
978,018 - B158DRAFT_0949 0.60 -1.5
978,167 + B158DRAFT_0949 0.73 +0.7
978,169 + B158DRAFT_0949 0.73 -0.4
978,299 - B158DRAFT_0949 0.84 -0.5
978,315 + B158DRAFT_0949 0.85 -0.4
978,393 - -0.6
978,448 + +0.0
978,448 + -0.4
978,456 - -0.7
978,492 + +1.0
978,492 + -0.3
978,500 - -0.7
978,590 + B158DRAFT_0950 0.13 -0.3
978,625 - B158DRAFT_0950 0.18 -0.4
978,658 + B158DRAFT_0950 0.22 -0.4
978,906 + B158DRAFT_0950 0.57 -0.1
978,906 + B158DRAFT_0950 0.57 -1.1
978,911 + B158DRAFT_0950 0.58 -0.7
978,925 - B158DRAFT_0950 0.60 -0.1
978,956 + B158DRAFT_0950 0.64 -0.3
979,018 + B158DRAFT_0950 0.73 +0.4
979,045 + B158DRAFT_0950 0.77 -1.2
979,193 - +0.3
979,198 - -0.6
979,198 - +0.1
979,225 - -1.4
979,320 - B158DRAFT_0951 0.19 -0.7

Or see this region's nucleotide sequence