Experiment: m.b. Chlorite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1798 and B158DRAFT_1799 are separated by 125 nucleotides B158DRAFT_1799 and B158DRAFT_1800 are separated by 188 nucleotides
B158DRAFT_1798: B158DRAFT_1798 - diguanylate cyclase (GGDEF) domain, at 1,893,101 to 1,895,113
_1798
B158DRAFT_1799: B158DRAFT_1799 - hypothetical protein, at 1,895,239 to 1,896,567
_1799
B158DRAFT_1800: B158DRAFT_1800 - transcription-repair coupling factor, at 1,896,756 to 1,900,178
_1800
Position (kb)
1895
1896
1897 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1894.242 kb on - strand, within B158DRAFT_1798 at 1894.283 kb on + strand, within B158DRAFT_1798 at 1894.284 kb on + strand, within B158DRAFT_1798 at 1894.297 kb on + strand, within B158DRAFT_1798 at 1894.323 kb on + strand, within B158DRAFT_1798 at 1894.443 kb on + strand, within B158DRAFT_1798 at 1894.445 kb on - strand, within B158DRAFT_1798 at 1894.544 kb on - strand, within B158DRAFT_1798 at 1894.640 kb on - strand, within B158DRAFT_1798 at 1894.641 kb on - strand, within B158DRAFT_1798 at 1894.647 kb on - strand, within B158DRAFT_1798 at 1894.721 kb on - strand, within B158DRAFT_1798 at 1894.948 kb on - strand at 1894.987 kb on + strand at 1894.995 kb on - strand at 1894.996 kb on + strand at 1895.004 kb on - strand at 1895.004 kb on - strand at 1895.004 kb on - strand at 1895.121 kb on + strand at 1895.263 kb on + strand at 1895.264 kb on - strand at 1895.284 kb on + strand at 1895.290 kb on + strand at 1895.290 kb on - strand at 1895.290 kb on - strand at 1895.290 kb on - strand at 1895.431 kb on + strand, within B158DRAFT_1799 at 1895.443 kb on + strand, within B158DRAFT_1799 at 1895.449 kb on + strand, within B158DRAFT_1799 at 1895.449 kb on - strand, within B158DRAFT_1799 at 1895.451 kb on - strand, within B158DRAFT_1799 at 1895.457 kb on - strand, within B158DRAFT_1799 at 1895.470 kb on + strand, within B158DRAFT_1799 at 1895.470 kb on + strand, within B158DRAFT_1799 at 1895.470 kb on + strand, within B158DRAFT_1799 at 1895.480 kb on + strand, within B158DRAFT_1799 at 1895.483 kb on - strand, within B158DRAFT_1799 at 1895.522 kb on + strand, within B158DRAFT_1799 at 1895.530 kb on - strand, within B158DRAFT_1799 at 1895.530 kb on - strand, within B158DRAFT_1799 at 1895.567 kb on + strand, within B158DRAFT_1799 at 1895.575 kb on - strand, within B158DRAFT_1799 at 1895.583 kb on - strand, within B158DRAFT_1799 at 1895.626 kb on + strand, within B158DRAFT_1799 at 1895.634 kb on - strand, within B158DRAFT_1799 at 1895.634 kb on - strand, within B158DRAFT_1799 at 1895.634 kb on - strand, within B158DRAFT_1799 at 1895.776 kb on + strand, within B158DRAFT_1799 at 1895.828 kb on - strand, within B158DRAFT_1799 at 1895.863 kb on + strand, within B158DRAFT_1799 at 1895.863 kb on + strand, within B158DRAFT_1799 at 1895.863 kb on + strand, within B158DRAFT_1799 at 1895.871 kb on - strand, within B158DRAFT_1799 at 1895.871 kb on - strand, within B158DRAFT_1799 at 1895.871 kb on - strand, within B158DRAFT_1799 at 1895.873 kb on + strand, within B158DRAFT_1799 at 1895.891 kb on - strand, within B158DRAFT_1799 at 1895.901 kb on + strand, within B158DRAFT_1799 at 1895.901 kb on + strand, within B158DRAFT_1799 at 1895.971 kb on + strand, within B158DRAFT_1799 at 1895.986 kb on - strand, within B158DRAFT_1799 at 1895.994 kb on + strand, within B158DRAFT_1799 at 1896.060 kb on - strand, within B158DRAFT_1799 at 1896.071 kb on - strand, within B158DRAFT_1799 at 1896.092 kb on - strand, within B158DRAFT_1799 at 1896.092 kb on - strand, within B158DRAFT_1799 at 1896.142 kb on - strand, within B158DRAFT_1799 at 1896.150 kb on - strand, within B158DRAFT_1799 at 1896.189 kb on + strand, within B158DRAFT_1799 at 1896.189 kb on + strand, within B158DRAFT_1799 at 1896.198 kb on - strand, within B158DRAFT_1799 at 1896.199 kb on + strand, within B158DRAFT_1799 at 1896.207 kb on - strand, within B158DRAFT_1799 at 1896.233 kb on + strand, within B158DRAFT_1799 at 1896.311 kb on - strand, within B158DRAFT_1799 at 1896.331 kb on - strand, within B158DRAFT_1799 at 1896.338 kb on + strand, within B158DRAFT_1799 at 1896.338 kb on + strand, within B158DRAFT_1799 at 1896.338 kb on + strand, within B158DRAFT_1799 at 1896.344 kb on + strand, within B158DRAFT_1799 at 1896.346 kb on - strand, within B158DRAFT_1799 at 1896.346 kb on - strand, within B158DRAFT_1799 at 1896.346 kb on - strand, within B158DRAFT_1799 at 1896.346 kb on - strand, within B158DRAFT_1799 at 1896.346 kb on - strand, within B158DRAFT_1799 at 1896.346 kb on - strand, within B158DRAFT_1799 at 1896.374 kb on - strand, within B158DRAFT_1799 at 1896.445 kb on + strand at 1896.476 kb on + strand at 1896.476 kb on + strand at 1896.484 kb on - strand at 1896.484 kb on - strand at 1896.484 kb on - strand at 1896.486 kb on + strand at 1896.549 kb on + strand at 1896.593 kb on - strand at 1896.618 kb on - strand at 1896.645 kb on - strand at 1896.653 kb on - strand at 1896.706 kb on - strand at 1896.771 kb on + strand at 1896.822 kb on + strand at 1896.822 kb on + strand at 1896.830 kb on - strand at 1896.830 kb on - strand at 1896.830 kb on - strand at 1896.830 kb on - strand at 1896.830 kb on - strand at 1896.898 kb on + strand at 1896.898 kb on + strand at 1896.898 kb on + strand at 1896.898 kb on + strand at 1896.898 kb on + strand at 1896.906 kb on - strand at 1896.906 kb on - strand at 1896.906 kb on - strand at 1896.906 kb on - strand at 1896.906 kb on - strand at 1896.906 kb on - strand at 1896.906 kb on - strand at 1896.906 kb on - strand at 1897.014 kb on + strand at 1897.014 kb on + strand at 1897.022 kb on - strand at 1897.022 kb on - strand at 1897.071 kb on - strand at 1897.097 kb on - strand at 1897.114 kb on - strand, within B158DRAFT_1800 at 1897.114 kb on - strand, within B158DRAFT_1800 at 1897.125 kb on - strand, within B158DRAFT_1800 at 1897.132 kb on - strand, within B158DRAFT_1800 at 1897.132 kb on - strand, within B158DRAFT_1800 at 1897.132 kb on - strand, within B158DRAFT_1800 at 1897.142 kb on - strand, within B158DRAFT_1800 at 1897.142 kb on - strand, within B158DRAFT_1800 at 1897.185 kb on - strand, within B158DRAFT_1800 at 1897.185 kb on - strand, within B158DRAFT_1800 at 1897.254 kb on + strand, within B158DRAFT_1800 at 1897.254 kb on + strand, within B158DRAFT_1800 at 1897.388 kb on + strand, within B158DRAFT_1800 at 1897.404 kb on + strand, within B158DRAFT_1800 at 1897.425 kb on + strand, within B158DRAFT_1800 at 1897.462 kb on - strand, within B158DRAFT_1800 at 1897.506 kb on - strand, within B158DRAFT_1800 at 1897.531 kb on + strand, within B158DRAFT_1800 at 1897.531 kb on + strand, within B158DRAFT_1800 at 1897.531 kb on + strand, within B158DRAFT_1800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 2.5 mM remove 1,894,242 - B158DRAFT_1798 0.57 +0.8 1,894,283 + B158DRAFT_1798 0.59 -0.5 1,894,284 + B158DRAFT_1798 0.59 -0.1 1,894,297 + B158DRAFT_1798 0.59 +0.4 1,894,323 + B158DRAFT_1798 0.61 -0.3 1,894,443 + B158DRAFT_1798 0.67 +0.0 1,894,445 - B158DRAFT_1798 0.67 -1.0 1,894,544 - B158DRAFT_1798 0.72 +1.5 1,894,640 - B158DRAFT_1798 0.76 +1.1 1,894,641 - B158DRAFT_1798 0.77 -1.9 1,894,647 - B158DRAFT_1798 0.77 -3.2 1,894,721 - B158DRAFT_1798 0.80 -3.2 1,894,948 - -2.3 1,894,987 + +1.2 1,894,995 - -1.7 1,894,996 + +0.1 1,895,004 - -1.6 1,895,004 - +1.3 1,895,004 - -1.1 1,895,121 + -0.7 1,895,263 + +0.8 1,895,264 - -1.1 1,895,284 + +1.0 1,895,290 + +0.3 1,895,290 - +0.7 1,895,290 - -2.4 1,895,290 - +0.0 1,895,431 + B158DRAFT_1799 0.14 +0.1 1,895,443 + B158DRAFT_1799 0.15 -0.9 1,895,449 + B158DRAFT_1799 0.16 +0.4 1,895,449 - B158DRAFT_1799 0.16 -0.9 1,895,451 - B158DRAFT_1799 0.16 -0.9 1,895,457 - B158DRAFT_1799 0.16 -0.7 1,895,470 + B158DRAFT_1799 0.17 -2.0 1,895,470 + B158DRAFT_1799 0.17 -1.3 1,895,470 + B158DRAFT_1799 0.17 -3.6 1,895,480 + B158DRAFT_1799 0.18 +0.6 1,895,483 - B158DRAFT_1799 0.18 -0.1 1,895,522 + B158DRAFT_1799 0.21 +0.0 1,895,530 - B158DRAFT_1799 0.22 +0.0 1,895,530 - B158DRAFT_1799 0.22 -3.3 1,895,567 + B158DRAFT_1799 0.25 -1.7 1,895,575 - B158DRAFT_1799 0.25 -0.9 1,895,583 - B158DRAFT_1799 0.26 -0.8 1,895,626 + B158DRAFT_1799 0.29 -1.6 1,895,634 - B158DRAFT_1799 0.30 +0.3 1,895,634 - B158DRAFT_1799 0.30 -2.7 1,895,634 - B158DRAFT_1799 0.30 +0.1 1,895,776 + B158DRAFT_1799 0.40 -0.0 1,895,828 - B158DRAFT_1799 0.44 +0.3 1,895,863 + B158DRAFT_1799 0.47 -0.2 1,895,863 + B158DRAFT_1799 0.47 -1.2 1,895,863 + B158DRAFT_1799 0.47 -0.6 1,895,871 - B158DRAFT_1799 0.48 -0.1 1,895,871 - B158DRAFT_1799 0.48 +0.7 1,895,871 - B158DRAFT_1799 0.48 -0.5 1,895,873 + B158DRAFT_1799 0.48 -0.3 1,895,891 - B158DRAFT_1799 0.49 +0.1 1,895,901 + B158DRAFT_1799 0.50 -0.0 1,895,901 + B158DRAFT_1799 0.50 -3.2 1,895,971 + B158DRAFT_1799 0.55 -0.8 1,895,986 - B158DRAFT_1799 0.56 +2.3 1,895,994 + B158DRAFT_1799 0.57 -1.4 1,896,060 - B158DRAFT_1799 0.62 -1.6 1,896,071 - B158DRAFT_1799 0.63 -0.7 1,896,092 - B158DRAFT_1799 0.64 -0.4 1,896,092 - B158DRAFT_1799 0.64 +0.6 1,896,142 - B158DRAFT_1799 0.68 -3.7 1,896,150 - B158DRAFT_1799 0.69 -2.1 1,896,189 + B158DRAFT_1799 0.71 -0.8 1,896,189 + B158DRAFT_1799 0.71 -1.1 1,896,198 - B158DRAFT_1799 0.72 -0.5 1,896,199 + B158DRAFT_1799 0.72 -1.0 1,896,207 - B158DRAFT_1799 0.73 -1.5 1,896,233 + B158DRAFT_1799 0.75 +2.5 1,896,311 - B158DRAFT_1799 0.81 -1.9 1,896,331 - B158DRAFT_1799 0.82 +0.1 1,896,338 + B158DRAFT_1799 0.83 -1.5 1,896,338 + B158DRAFT_1799 0.83 -0.1 1,896,338 + B158DRAFT_1799 0.83 -0.7 1,896,344 + B158DRAFT_1799 0.83 +0.5 1,896,346 - B158DRAFT_1799 0.83 -1.5 1,896,346 - B158DRAFT_1799 0.83 +1.4 1,896,346 - B158DRAFT_1799 0.83 +2.2 1,896,346 - B158DRAFT_1799 0.83 +0.6 1,896,346 - B158DRAFT_1799 0.83 -1.8 1,896,346 - B158DRAFT_1799 0.83 -1.3 1,896,374 - B158DRAFT_1799 0.85 +0.3 1,896,445 + -0.3 1,896,476 + -2.2 1,896,476 + +0.3 1,896,484 - +0.7 1,896,484 - -0.6 1,896,484 - +1.4 1,896,486 + -2.7 1,896,549 + -0.4 1,896,593 - -2.0 1,896,618 - +0.5 1,896,645 - -1.5 1,896,653 - +0.0 1,896,706 - +0.1 1,896,771 + +0.6 1,896,822 + +1.0 1,896,822 + +0.3 1,896,830 - +0.3 1,896,830 - +0.3 1,896,830 - +1.2 1,896,830 - +0.6 1,896,830 - +0.8 1,896,898 + -1.5 1,896,898 + +0.6 1,896,898 + +0.6 1,896,898 + +1.0 1,896,898 + +0.5 1,896,906 - +0.7 1,896,906 - +0.1 1,896,906 - +1.3 1,896,906 - -0.9 1,896,906 - -1.2 1,896,906 - +0.6 1,896,906 - +0.9 1,896,906 - +0.1 1,897,014 + +1.3 1,897,014 + +1.4 1,897,022 - +1.0 1,897,022 - +1.2 1,897,071 - +0.7 1,897,097 - +2.0 1,897,114 - B158DRAFT_1800 0.10 -0.3 1,897,114 - B158DRAFT_1800 0.10 +0.8 1,897,125 - B158DRAFT_1800 0.11 +1.0 1,897,132 - B158DRAFT_1800 0.11 +0.1 1,897,132 - B158DRAFT_1800 0.11 -0.7 1,897,132 - B158DRAFT_1800 0.11 +0.0 1,897,142 - B158DRAFT_1800 0.11 +0.6 1,897,142 - B158DRAFT_1800 0.11 +1.4 1,897,185 - B158DRAFT_1800 0.13 +1.1 1,897,185 - B158DRAFT_1800 0.13 +0.9 1,897,254 + B158DRAFT_1800 0.15 +0.4 1,897,254 + B158DRAFT_1800 0.15 +1.0 1,897,388 + B158DRAFT_1800 0.18 +0.9 1,897,404 + B158DRAFT_1800 0.19 +1.3 1,897,425 + B158DRAFT_1800 0.20 +0.2 1,897,462 - B158DRAFT_1800 0.21 +1.1 1,897,506 - B158DRAFT_1800 0.22 +1.0 1,897,531 + B158DRAFT_1800 0.23 +1.0 1,897,531 + B158DRAFT_1800 0.23 +0.9 1,897,531 + B158DRAFT_1800 0.23 +1.5
Or see this region's nucleotide sequence