Experiment: m.b. Chlorite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1777 and B158DRAFT_1778 are separated by 658 nucleotides B158DRAFT_1778 and B158DRAFT_1779 are separated by 30 nucleotides
B158DRAFT_1777: B158DRAFT_1777 - Collagen triple helix repeat (20 copies)., at 1,864,595 to 1,866,811
_1777
B158DRAFT_1778: B158DRAFT_1778 - diguanylate cyclase (GGDEF) domain, at 1,867,470 to 1,868,744
_1778
B158DRAFT_1779: B158DRAFT_1779 - ATP-dependent helicase HrpA, at 1,868,775 to 1,872,734
_1779
Position (kb)
1867
1868
1869 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1866.473 kb on - strand, within B158DRAFT_1777 at 1866.519 kb on + strand, within B158DRAFT_1777 at 1866.519 kb on + strand, within B158DRAFT_1777 at 1866.519 kb on + strand, within B158DRAFT_1777 at 1866.553 kb on + strand, within B158DRAFT_1777 at 1866.553 kb on + strand, within B158DRAFT_1777 at 1866.561 kb on - strand, within B158DRAFT_1777 at 1866.561 kb on - strand, within B158DRAFT_1777 at 1866.561 kb on - strand, within B158DRAFT_1777 at 1866.561 kb on - strand, within B158DRAFT_1777 at 1866.561 kb on - strand, within B158DRAFT_1777 at 1866.561 kb on - strand, within B158DRAFT_1777 at 1866.591 kb on + strand at 1866.601 kb on + strand at 1866.601 kb on + strand at 1866.601 kb on + strand at 1866.601 kb on + strand at 1866.601 kb on + strand at 1866.601 kb on + strand at 1866.609 kb on - strand at 1866.609 kb on - strand at 1866.609 kb on - strand at 1866.617 kb on - strand at 1866.624 kb on - strand at 1866.626 kb on + strand at 1866.647 kb on - strand at 1866.655 kb on + strand at 1866.686 kb on + strand at 1866.702 kb on + strand at 1866.702 kb on + strand at 1866.707 kb on + strand at 1866.710 kb on - strand at 1866.715 kb on - strand at 1866.758 kb on + strand at 1866.764 kb on + strand at 1866.764 kb on + strand at 1866.764 kb on + strand at 1866.764 kb on + strand at 1866.764 kb on + strand at 1866.764 kb on + strand at 1866.764 kb on + strand at 1866.764 kb on + strand at 1866.771 kb on - strand at 1866.772 kb on - strand at 1866.772 kb on - strand at 1866.772 kb on - strand at 1866.772 kb on - strand at 1866.772 kb on - strand at 1866.781 kb on - strand at 1866.781 kb on - strand at 1866.800 kb on - strand at 1866.806 kb on - strand at 1867.119 kb on + strand at 1867.119 kb on + strand at 1867.127 kb on - strand at 1867.209 kb on + strand at 1867.365 kb on + strand at 1867.374 kb on - strand at 1867.384 kb on - strand at 1867.387 kb on + strand at 1867.395 kb on - strand at 1867.486 kb on + strand at 1867.561 kb on - strand at 1867.563 kb on + strand at 1867.571 kb on - strand at 1867.577 kb on - strand at 1867.616 kb on + strand, within B158DRAFT_1778 at 1867.669 kb on - strand, within B158DRAFT_1778 at 1867.707 kb on + strand, within B158DRAFT_1778 at 1867.715 kb on - strand, within B158DRAFT_1778 at 1867.715 kb on - strand, within B158DRAFT_1778 at 1867.754 kb on + strand, within B158DRAFT_1778 at 1867.773 kb on + strand, within B158DRAFT_1778 at 1867.827 kb on + strand, within B158DRAFT_1778 at 1867.904 kb on - strand, within B158DRAFT_1778 at 1867.909 kb on - strand, within B158DRAFT_1778 at 1867.942 kb on + strand, within B158DRAFT_1778 at 1867.950 kb on - strand, within B158DRAFT_1778 at 1867.954 kb on - strand, within B158DRAFT_1778 at 1867.968 kb on - strand, within B158DRAFT_1778 at 1868.023 kb on + strand, within B158DRAFT_1778 at 1868.030 kb on - strand, within B158DRAFT_1778 at 1868.031 kb on - strand, within B158DRAFT_1778 at 1868.031 kb on - strand, within B158DRAFT_1778 at 1868.031 kb on - strand, within B158DRAFT_1778 at 1868.031 kb on - strand, within B158DRAFT_1778 at 1868.103 kb on + strand, within B158DRAFT_1778 at 1868.103 kb on + strand, within B158DRAFT_1778 at 1868.103 kb on + strand, within B158DRAFT_1778 at 1868.103 kb on + strand, within B158DRAFT_1778 at 1868.111 kb on - strand, within B158DRAFT_1778 at 1868.281 kb on + strand, within B158DRAFT_1778 at 1868.294 kb on + strand, within B158DRAFT_1778 at 1868.294 kb on + strand, within B158DRAFT_1778 at 1868.301 kb on + strand, within B158DRAFT_1778 at 1868.302 kb on - strand, within B158DRAFT_1778 at 1868.302 kb on - strand, within B158DRAFT_1778 at 1868.311 kb on + strand, within B158DRAFT_1778 at 1868.311 kb on + strand, within B158DRAFT_1778 at 1868.319 kb on - strand, within B158DRAFT_1778 at 1868.319 kb on - strand, within B158DRAFT_1778 at 1868.319 kb on - strand, within B158DRAFT_1778 at 1868.356 kb on + strand, within B158DRAFT_1778 at 1868.378 kb on + strand, within B158DRAFT_1778 at 1868.402 kb on - strand, within B158DRAFT_1778 at 1868.463 kb on + strand, within B158DRAFT_1778 at 1868.463 kb on - strand, within B158DRAFT_1778 at 1868.471 kb on - strand, within B158DRAFT_1778 at 1868.489 kb on - strand, within B158DRAFT_1778 at 1868.653 kb on - strand at 1868.719 kb on + strand at 1868.719 kb on + strand at 1868.719 kb on + strand at 1868.719 kb on + strand at 1868.719 kb on + strand at 1868.719 kb on + strand at 1868.727 kb on - strand at 1868.727 kb on - strand at 1868.727 kb on - strand at 1868.850 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.923 kb on + strand at 1868.931 kb on - strand at 1868.931 kb on - strand at 1868.931 kb on - strand at 1868.931 kb on - strand at 1868.931 kb on - strand at 1868.931 kb on - strand at 1868.931 kb on - strand at 1868.931 kb on - strand at 1868.933 kb on + strand at 1868.941 kb on - strand at 1868.941 kb on - strand at 1868.951 kb on + strand at 1868.959 kb on - strand at 1869.005 kb on + strand at 1869.301 kb on + strand, within B158DRAFT_1779 at 1869.305 kb on + strand, within B158DRAFT_1779 at 1869.324 kb on + strand, within B158DRAFT_1779 at 1869.324 kb on + strand, within B158DRAFT_1779 at 1869.324 kb on + strand, within B158DRAFT_1779 at 1869.332 kb on - strand, within B158DRAFT_1779 at 1869.332 kb on - strand, within B158DRAFT_1779 at 1869.332 kb on - strand, within B158DRAFT_1779 at 1869.332 kb on - strand, within B158DRAFT_1779 at 1869.332 kb on - strand, within B158DRAFT_1779 at 1869.332 kb on - strand, within B158DRAFT_1779 at 1869.332 kb on - strand, within B158DRAFT_1779 at 1869.332 kb on - strand, within B158DRAFT_1779 at 1869.332 kb on - strand, within B158DRAFT_1779 at 1869.350 kb on + strand, within B158DRAFT_1779 at 1869.350 kb on + strand, within B158DRAFT_1779 at 1869.358 kb on - strand, within B158DRAFT_1779 at 1869.420 kb on + strand, within B158DRAFT_1779 at 1869.470 kb on + strand, within B158DRAFT_1779 at 1869.539 kb on - strand, within B158DRAFT_1779 at 1869.612 kb on + strand, within B158DRAFT_1779 at 1869.612 kb on + strand, within B158DRAFT_1779 at 1869.657 kb on - strand, within B158DRAFT_1779 at 1869.691 kb on - strand, within B158DRAFT_1779 at 1869.691 kb on - strand, within B158DRAFT_1779 at 1869.691 kb on - strand, within B158DRAFT_1779
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 2.5 mM remove 1,866,473 - B158DRAFT_1777 0.85 -0.2 1,866,519 + B158DRAFT_1777 0.87 -1.9 1,866,519 + B158DRAFT_1777 0.87 -0.0 1,866,519 + B158DRAFT_1777 0.87 -1.3 1,866,553 + B158DRAFT_1777 0.88 -0.3 1,866,553 + B158DRAFT_1777 0.88 -0.3 1,866,561 - B158DRAFT_1777 0.89 -0.1 1,866,561 - B158DRAFT_1777 0.89 +1.8 1,866,561 - B158DRAFT_1777 0.89 -0.8 1,866,561 - B158DRAFT_1777 0.89 +1.6 1,866,561 - B158DRAFT_1777 0.89 +0.6 1,866,561 - B158DRAFT_1777 0.89 +1.2 1,866,591 + -1.7 1,866,601 + +0.7 1,866,601 + +1.0 1,866,601 + -0.6 1,866,601 + +0.3 1,866,601 + -2.3 1,866,601 + -0.4 1,866,609 - -2.5 1,866,609 - +0.6 1,866,609 - -2.1 1,866,617 - +1.0 1,866,624 - -0.2 1,866,626 + +1.8 1,866,647 - +0.3 1,866,655 + -0.0 1,866,686 + -1.0 1,866,702 + +0.6 1,866,702 + -0.3 1,866,707 + +0.5 1,866,710 - +0.2 1,866,715 - +0.7 1,866,758 + +0.7 1,866,764 + -0.3 1,866,764 + -0.8 1,866,764 + -0.3 1,866,764 + -1.8 1,866,764 + -1.4 1,866,764 + +0.9 1,866,764 + -0.6 1,866,764 + -0.6 1,866,771 - -1.0 1,866,772 - -1.1 1,866,772 - -0.4 1,866,772 - -2.0 1,866,772 - -0.5 1,866,772 - +0.8 1,866,781 - -0.5 1,866,781 - -0.5 1,866,800 - -0.1 1,866,806 - +0.8 1,867,119 + -1.5 1,867,119 + +1.7 1,867,127 - -1.0 1,867,209 + -0.3 1,867,365 + -2.0 1,867,374 - -0.9 1,867,384 - -0.4 1,867,387 + +0.2 1,867,395 - -0.4 1,867,486 + -0.7 1,867,561 - -0.7 1,867,563 + -0.2 1,867,571 - -0.8 1,867,577 - -2.4 1,867,616 + B158DRAFT_1778 0.11 -0.5 1,867,669 - B158DRAFT_1778 0.16 -1.4 1,867,707 + B158DRAFT_1778 0.19 +0.1 1,867,715 - B158DRAFT_1778 0.19 +0.1 1,867,715 - B158DRAFT_1778 0.19 -0.2 1,867,754 + B158DRAFT_1778 0.22 -2.1 1,867,773 + B158DRAFT_1778 0.24 -1.2 1,867,827 + B158DRAFT_1778 0.28 +0.1 1,867,904 - B158DRAFT_1778 0.34 -0.2 1,867,909 - B158DRAFT_1778 0.34 -0.7 1,867,942 + B158DRAFT_1778 0.37 -0.3 1,867,950 - B158DRAFT_1778 0.38 -1.6 1,867,954 - B158DRAFT_1778 0.38 +1.1 1,867,968 - B158DRAFT_1778 0.39 -2.0 1,868,023 + B158DRAFT_1778 0.43 -2.2 1,868,030 - B158DRAFT_1778 0.44 -0.2 1,868,031 - B158DRAFT_1778 0.44 -0.9 1,868,031 - B158DRAFT_1778 0.44 -0.8 1,868,031 - B158DRAFT_1778 0.44 -1.1 1,868,031 - B158DRAFT_1778 0.44 -1.7 1,868,103 + B158DRAFT_1778 0.50 -3.0 1,868,103 + B158DRAFT_1778 0.50 +0.3 1,868,103 + B158DRAFT_1778 0.50 -0.7 1,868,103 + B158DRAFT_1778 0.50 -1.1 1,868,111 - B158DRAFT_1778 0.50 -0.3 1,868,281 + B158DRAFT_1778 0.64 +1.6 1,868,294 + B158DRAFT_1778 0.65 +0.4 1,868,294 + B158DRAFT_1778 0.65 +0.3 1,868,301 + B158DRAFT_1778 0.65 +0.8 1,868,302 - B158DRAFT_1778 0.65 +0.0 1,868,302 - B158DRAFT_1778 0.65 -2.0 1,868,311 + B158DRAFT_1778 0.66 -0.9 1,868,311 + B158DRAFT_1778 0.66 -1.0 1,868,319 - B158DRAFT_1778 0.67 -2.0 1,868,319 - B158DRAFT_1778 0.67 -0.3 1,868,319 - B158DRAFT_1778 0.67 -1.9 1,868,356 + B158DRAFT_1778 0.69 -1.3 1,868,378 + B158DRAFT_1778 0.71 -0.9 1,868,402 - B158DRAFT_1778 0.73 +0.3 1,868,463 + B158DRAFT_1778 0.78 +0.7 1,868,463 - B158DRAFT_1778 0.78 -0.5 1,868,471 - B158DRAFT_1778 0.79 +0.5 1,868,489 - B158DRAFT_1778 0.80 +0.5 1,868,653 - -0.3 1,868,719 + -0.2 1,868,719 + -1.2 1,868,719 + +0.1 1,868,719 + -1.1 1,868,719 + -2.7 1,868,719 + -1.5 1,868,727 - +0.7 1,868,727 - +0.3 1,868,727 - +0.3 1,868,850 + +1.8 1,868,923 + +0.7 1,868,923 + +0.1 1,868,923 + -0.1 1,868,923 + -0.3 1,868,923 + +1.1 1,868,923 + +0.9 1,868,923 + +0.2 1,868,923 + +1.2 1,868,923 + -0.0 1,868,923 + -0.3 1,868,923 + +0.4 1,868,931 - +2.7 1,868,931 - +1.4 1,868,931 - -1.1 1,868,931 - +0.1 1,868,931 - +0.3 1,868,931 - +3.5 1,868,931 - +5.7 1,868,931 - -0.4 1,868,933 + -0.5 1,868,941 - -1.0 1,868,941 - +0.2 1,868,951 + +2.5 1,868,959 - -0.3 1,869,005 + +0.3 1,869,301 + B158DRAFT_1779 0.13 -2.5 1,869,305 + B158DRAFT_1779 0.13 +1.5 1,869,324 + B158DRAFT_1779 0.14 +1.4 1,869,324 + B158DRAFT_1779 0.14 +0.8 1,869,324 + B158DRAFT_1779 0.14 -2.4 1,869,332 - B158DRAFT_1779 0.14 -1.0 1,869,332 - B158DRAFT_1779 0.14 +0.8 1,869,332 - B158DRAFT_1779 0.14 +0.3 1,869,332 - B158DRAFT_1779 0.14 +0.3 1,869,332 - B158DRAFT_1779 0.14 +1.5 1,869,332 - B158DRAFT_1779 0.14 -0.9 1,869,332 - B158DRAFT_1779 0.14 +0.9 1,869,332 - B158DRAFT_1779 0.14 -0.3 1,869,332 - B158DRAFT_1779 0.14 +1.7 1,869,350 + B158DRAFT_1779 0.15 -0.3 1,869,350 + B158DRAFT_1779 0.15 -1.5 1,869,358 - B158DRAFT_1779 0.15 +0.7 1,869,420 + B158DRAFT_1779 0.16 +0.6 1,869,470 + B158DRAFT_1779 0.18 -1.0 1,869,539 - B158DRAFT_1779 0.19 -0.0 1,869,612 + B158DRAFT_1779 0.21 -0.7 1,869,612 + B158DRAFT_1779 0.21 -1.2 1,869,657 - B158DRAFT_1779 0.22 -1.2 1,869,691 - B158DRAFT_1779 0.23 -0.1 1,869,691 - B158DRAFT_1779 0.23 +0.3 1,869,691 - B158DRAFT_1779 0.23 +1.1
Or see this region's nucleotide sequence