Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1343

Experiment: m.b. Chlorite 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1342 and B158DRAFT_1343 are separated by 371 nucleotidesB158DRAFT_1343 and B158DRAFT_1344 are separated by 19 nucleotides B158DRAFT_1342: B158DRAFT_1342 - fumarase, class I, homodimeric (EC 4.2.1.2), at 1,384,224 to 1,385,729 _1342 B158DRAFT_1343: B158DRAFT_1343 - methylisocitrate lyase, at 1,386,101 to 1,386,985 _1343 B158DRAFT_1344: B158DRAFT_1344 - 2-methylcitrate synthase (EC 2.3.3.5), at 1,387,005 to 1,388,144 _1344 Position (kb) 1386 1387Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1385.692 kb on - strandat 1385.692 kb on - strandat 1385.703 kb on + strandat 1385.705 kb on + strandat 1385.713 kb on - strandat 1385.830 kb on + strandat 1385.901 kb on - strandat 1385.951 kb on + strandat 1386.000 kb on - strandat 1386.180 kb on - strandat 1386.289 kb on - strand, within B158DRAFT_1343at 1386.320 kb on - strand, within B158DRAFT_1343at 1386.327 kb on - strand, within B158DRAFT_1343at 1386.364 kb on - strand, within B158DRAFT_1343at 1386.364 kb on - strand, within B158DRAFT_1343at 1386.592 kb on - strand, within B158DRAFT_1343at 1386.604 kb on - strand, within B158DRAFT_1343at 1386.671 kb on - strand, within B158DRAFT_1343at 1386.748 kb on - strand, within B158DRAFT_1343at 1386.748 kb on - strand, within B158DRAFT_1343at 1386.998 kb on - strandat 1387.004 kb on - strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.051 kb on - strandat 1387.100 kb on - strandat 1387.272 kb on - strand, within B158DRAFT_1344at 1387.307 kb on - strand, within B158DRAFT_1344at 1387.335 kb on + strand, within B158DRAFT_1344at 1387.376 kb on + strand, within B158DRAFT_1344at 1387.476 kb on - strand, within B158DRAFT_1344at 1387.530 kb on - strand, within B158DRAFT_1344at 1387.545 kb on + strand, within B158DRAFT_1344at 1387.553 kb on - strand, within B158DRAFT_1344at 1387.553 kb on - strand, within B158DRAFT_1344at 1387.570 kb on - strand, within B158DRAFT_1344at 1387.572 kb on + strand, within B158DRAFT_1344at 1387.580 kb on - strand, within B158DRAFT_1344at 1387.588 kb on - strand, within B158DRAFT_1344at 1387.588 kb on - strand, within B158DRAFT_1344at 1387.593 kb on + strand, within B158DRAFT_1344at 1387.629 kb on + strand, within B158DRAFT_1344at 1387.629 kb on + strand, within B158DRAFT_1344at 1387.631 kb on - strand, within B158DRAFT_1344at 1387.632 kb on - strand, within B158DRAFT_1344at 1387.637 kb on - strand, within B158DRAFT_1344at 1387.637 kb on - strand, within B158DRAFT_1344at 1387.637 kb on - strand, within B158DRAFT_1344at 1387.672 kb on + strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.687 kb on - strand, within B158DRAFT_1344at 1387.719 kb on + strand, within B158DRAFT_1344at 1387.719 kb on + strand, within B158DRAFT_1344at 1387.727 kb on - strand, within B158DRAFT_1344at 1387.727 kb on - strand, within B158DRAFT_1344at 1387.729 kb on + strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.803 kb on + strand, within B158DRAFT_1344at 1387.810 kb on - strand, within B158DRAFT_1344at 1387.891 kb on + strand, within B158DRAFT_1344

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 2.5 mM
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1,385,692 - +1.7
1,385,692 - -2.6
1,385,703 + -0.3
1,385,705 + -0.1
1,385,713 - -3.6
1,385,830 + +0.2
1,385,901 - -1.4
1,385,951 + +0.3
1,386,000 - +0.8
1,386,180 - -0.1
1,386,289 - B158DRAFT_1343 0.21 +0.7
1,386,320 - B158DRAFT_1343 0.25 -0.4
1,386,327 - B158DRAFT_1343 0.26 -1.6
1,386,364 - B158DRAFT_1343 0.30 -0.4
1,386,364 - B158DRAFT_1343 0.30 -0.1
1,386,592 - B158DRAFT_1343 0.55 -0.7
1,386,604 - B158DRAFT_1343 0.57 -1.0
1,386,671 - B158DRAFT_1343 0.64 -2.8
1,386,748 - B158DRAFT_1343 0.73 -2.3
1,386,748 - B158DRAFT_1343 0.73 -1.4
1,386,998 - -1.2
1,387,004 - -1.1
1,387,043 + -0.9
1,387,043 + +1.7
1,387,043 + -0.1
1,387,043 + -1.2
1,387,043 + -2.7
1,387,043 + +0.9
1,387,051 - -1.5
1,387,100 - +1.2
1,387,272 - B158DRAFT_1344 0.23 +0.3
1,387,307 - B158DRAFT_1344 0.26 -0.1
1,387,335 + B158DRAFT_1344 0.29 +0.9
1,387,376 + B158DRAFT_1344 0.33 -1.6
1,387,476 - B158DRAFT_1344 0.41 +0.4
1,387,530 - B158DRAFT_1344 0.46 -3.7
1,387,545 + B158DRAFT_1344 0.47 +2.0
1,387,553 - B158DRAFT_1344 0.48 -1.8
1,387,553 - B158DRAFT_1344 0.48 +0.8
1,387,570 - B158DRAFT_1344 0.50 -1.4
1,387,572 + B158DRAFT_1344 0.50 +0.2
1,387,580 - B158DRAFT_1344 0.50 +0.4
1,387,588 - B158DRAFT_1344 0.51 +0.7
1,387,588 - B158DRAFT_1344 0.51 +0.7
1,387,593 + B158DRAFT_1344 0.52 -2.0
1,387,629 + B158DRAFT_1344 0.55 +0.7
1,387,629 + B158DRAFT_1344 0.55 -0.4
1,387,631 - B158DRAFT_1344 0.55 -0.2
1,387,632 - B158DRAFT_1344 0.55 +1.2
1,387,637 - B158DRAFT_1344 0.55 +0.3
1,387,637 - B158DRAFT_1344 0.55 +0.4
1,387,637 - B158DRAFT_1344 0.55 -2.4
1,387,672 + B158DRAFT_1344 0.59 -0.2
1,387,680 - B158DRAFT_1344 0.59 +1.0
1,387,680 - B158DRAFT_1344 0.59 +1.0
1,387,680 - B158DRAFT_1344 0.59 -3.3
1,387,680 - B158DRAFT_1344 0.59 -1.4
1,387,680 - B158DRAFT_1344 0.59 -0.6
1,387,680 - B158DRAFT_1344 0.59 -0.1
1,387,687 - B158DRAFT_1344 0.60 +0.9
1,387,719 + B158DRAFT_1344 0.63 -0.2
1,387,719 + B158DRAFT_1344 0.63 +1.6
1,387,727 - B158DRAFT_1344 0.63 -0.9
1,387,727 - B158DRAFT_1344 0.63 -2.9
1,387,729 + B158DRAFT_1344 0.64 +1.4
1,387,737 - B158DRAFT_1344 0.64 -0.0
1,387,737 - B158DRAFT_1344 0.64 +0.0
1,387,737 - B158DRAFT_1344 0.64 +0.4
1,387,737 - B158DRAFT_1344 0.64 +0.1
1,387,803 + B158DRAFT_1344 0.70 +0.4
1,387,810 - B158DRAFT_1344 0.71 +0.5
1,387,891 + B158DRAFT_1344 0.78 +0.0

Or see this region's nucleotide sequence