Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2456

Experiment: m.b. Sisomicin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2455 and B158DRAFT_2456 are separated by 285 nucleotidesB158DRAFT_2456 and B158DRAFT_2457 are separated by 66 nucleotidesB158DRAFT_2457 and B158DRAFT_2458 are separated by 170 nucleotides B158DRAFT_2455: B158DRAFT_2455 - Transcriptional regulator, at 630,402 to 631,406 _2455 B158DRAFT_2456: B158DRAFT_2456 - cysteine synthase A, at 631,692 to 632,639 _2456 B158DRAFT_2457: B158DRAFT_2457 - methionine repressor, MetJ, at 632,706 to 633,002 _2457 B158DRAFT_2458: B158DRAFT_2458 - Homoserine acetyltransferase, at 633,173 to 634,192 _2458 Position (kb) 631 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 630.875 kb on + strand, within B158DRAFT_2455at 630.875 kb on + strand, within B158DRAFT_2455at 630.877 kb on + strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.883 kb on - strand, within B158DRAFT_2455at 630.885 kb on - strand, within B158DRAFT_2455at 630.893 kb on + strand, within B158DRAFT_2455at 630.901 kb on + strand, within B158DRAFT_2455at 630.955 kb on - strand, within B158DRAFT_2455at 631.005 kb on + strand, within B158DRAFT_2455at 631.015 kb on + strand, within B158DRAFT_2455at 631.023 kb on - strand, within B158DRAFT_2455at 631.023 kb on - strand, within B158DRAFT_2455at 631.066 kb on + strand, within B158DRAFT_2455at 631.190 kb on - strand, within B158DRAFT_2455at 631.226 kb on + strand, within B158DRAFT_2455at 631.234 kb on - strand, within B158DRAFT_2455at 631.234 kb on - strand, within B158DRAFT_2455at 631.234 kb on - strand, within B158DRAFT_2455at 631.345 kb on - strandat 631.350 kb on - strandat 631.361 kb on - strandat 631.519 kb on + strandat 631.580 kb on - strandat 631.821 kb on + strand, within B158DRAFT_2456at 631.829 kb on - strand, within B158DRAFT_2456at 631.829 kb on - strand, within B158DRAFT_2456at 631.859 kb on - strand, within B158DRAFT_2456at 631.882 kb on + strand, within B158DRAFT_2456at 631.892 kb on + strand, within B158DRAFT_2456at 631.915 kb on - strand, within B158DRAFT_2456at 631.923 kb on + strand, within B158DRAFT_2456at 631.928 kb on + strand, within B158DRAFT_2456at 631.931 kb on - strand, within B158DRAFT_2456at 631.931 kb on - strand, within B158DRAFT_2456at 631.931 kb on - strand, within B158DRAFT_2456at 631.936 kb on - strand, within B158DRAFT_2456at 632.038 kb on - strand, within B158DRAFT_2456at 632.134 kb on - strand, within B158DRAFT_2456at 632.147 kb on + strand, within B158DRAFT_2456at 632.150 kb on + strand, within B158DRAFT_2456at 632.319 kb on + strand, within B158DRAFT_2456at 632.319 kb on + strand, within B158DRAFT_2456at 632.319 kb on + strand, within B158DRAFT_2456at 632.439 kb on + strand, within B158DRAFT_2456at 632.439 kb on + strand, within B158DRAFT_2456at 632.447 kb on - strand, within B158DRAFT_2456at 632.495 kb on - strand, within B158DRAFT_2456at 632.506 kb on + strand, within B158DRAFT_2456at 632.532 kb on - strand, within B158DRAFT_2456at 632.584 kb on + strandat 632.693 kb on - strandat 632.753 kb on - strand, within B158DRAFT_2457at 632.800 kb on + strand, within B158DRAFT_2457at 632.800 kb on + strand, within B158DRAFT_2457at 632.808 kb on - strand, within B158DRAFT_2457at 633.014 kb on - strandat 633.051 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.139 kb on - strandat 633.145 kb on - strandat 633.145 kb on - strandat 633.145 kb on - strandat 633.145 kb on - strandat 633.145 kb on - strandat 633.200 kb on + strandat 633.200 kb on + strandat 633.215 kb on - strandat 633.216 kb on - strandat 633.227 kb on + strandat 633.235 kb on - strandat 633.235 kb on - strandat 633.240 kb on + strandat 633.240 kb on + strandat 633.240 kb on + strandat 633.250 kb on + strandat 633.266 kb on - strandat 633.285 kb on - strand, within B158DRAFT_2458at 633.317 kb on - strand, within B158DRAFT_2458at 633.317 kb on - strand, within B158DRAFT_2458at 633.317 kb on - strand, within B158DRAFT_2458at 633.351 kb on + strand, within B158DRAFT_2458at 633.358 kb on + strand, within B158DRAFT_2458at 633.481 kb on + strand, within B158DRAFT_2458at 633.538 kb on + strand, within B158DRAFT_2458at 633.538 kb on + strand, within B158DRAFT_2458at 633.538 kb on + strand, within B158DRAFT_2458at 633.541 kb on - strand, within B158DRAFT_2458at 633.546 kb on - strand, within B158DRAFT_2458at 633.546 kb on - strand, within B158DRAFT_2458at 633.546 kb on - strand, within B158DRAFT_2458

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml
remove
630,875 + B158DRAFT_2455 0.47 -0.9
630,875 + B158DRAFT_2455 0.47 -0.4
630,877 + B158DRAFT_2455 0.47 -0.9
630,883 - B158DRAFT_2455 0.48 -1.0
630,883 - B158DRAFT_2455 0.48 -1.5
630,883 - B158DRAFT_2455 0.48 -0.6
630,883 - B158DRAFT_2455 0.48 +5.5
630,883 - B158DRAFT_2455 0.48 -0.4
630,885 - B158DRAFT_2455 0.48 +3.4
630,893 + B158DRAFT_2455 0.49 +0.6
630,901 + B158DRAFT_2455 0.50 -0.2
630,955 - B158DRAFT_2455 0.55 -0.2
631,005 + B158DRAFT_2455 0.60 +0.0
631,015 + B158DRAFT_2455 0.61 -3.2
631,023 - B158DRAFT_2455 0.62 +1.4
631,023 - B158DRAFT_2455 0.62 +0.4
631,066 + B158DRAFT_2455 0.66 +2.1
631,190 - B158DRAFT_2455 0.78 -1.6
631,226 + B158DRAFT_2455 0.82 -0.7
631,234 - B158DRAFT_2455 0.83 +0.3
631,234 - B158DRAFT_2455 0.83 -1.1
631,234 - B158DRAFT_2455 0.83 -1.7
631,345 - -0.5
631,350 - +0.3
631,361 - -0.4
631,519 + +0.5
631,580 - -0.3
631,821 + B158DRAFT_2456 0.14 +2.0
631,829 - B158DRAFT_2456 0.14 -1.0
631,829 - B158DRAFT_2456 0.14 -0.3
631,859 - B158DRAFT_2456 0.18 -1.9
631,882 + B158DRAFT_2456 0.20 +0.7
631,892 + B158DRAFT_2456 0.21 +0.6
631,915 - B158DRAFT_2456 0.24 -1.0
631,923 + B158DRAFT_2456 0.24 +1.7
631,928 + B158DRAFT_2456 0.25 +0.6
631,931 - B158DRAFT_2456 0.25 +0.6
631,931 - B158DRAFT_2456 0.25 +0.4
631,931 - B158DRAFT_2456 0.25 +0.9
631,936 - B158DRAFT_2456 0.26 +0.6
632,038 - B158DRAFT_2456 0.36 +0.1
632,134 - B158DRAFT_2456 0.47 +1.0
632,147 + B158DRAFT_2456 0.48 -1.2
632,150 + B158DRAFT_2456 0.48 -1.3
632,319 + B158DRAFT_2456 0.66 +1.2
632,319 + B158DRAFT_2456 0.66 -0.7
632,319 + B158DRAFT_2456 0.66 -0.9
632,439 + B158DRAFT_2456 0.79 -1.0
632,439 + B158DRAFT_2456 0.79 +1.5
632,447 - B158DRAFT_2456 0.80 +1.2
632,495 - B158DRAFT_2456 0.85 +1.2
632,506 + B158DRAFT_2456 0.86 -0.6
632,532 - B158DRAFT_2456 0.89 -2.9
632,584 + -0.9
632,693 - +0.2
632,753 - B158DRAFT_2457 0.16 +5.9
632,800 + B158DRAFT_2457 0.32 +5.3
632,800 + B158DRAFT_2457 0.32 +6.1
632,808 - B158DRAFT_2457 0.34 +6.4
633,014 - +6.1
633,051 + +1.9
633,137 + +2.3
633,137 + +1.9
633,137 + -0.8
633,137 + -3.1
633,137 + +0.5
633,137 + -0.4
633,139 - -0.3
633,145 - +0.3
633,145 - -0.1
633,145 - -0.8
633,145 - -0.0
633,145 - -0.5
633,200 + -1.0
633,200 + -1.6
633,215 - -2.2
633,216 - -1.8
633,227 + +0.4
633,235 - +0.2
633,235 - -0.6
633,240 + +0.7
633,240 + -0.1
633,240 + +0.2
633,250 + +1.8
633,266 - -0.7
633,285 - B158DRAFT_2458 0.11 -2.1
633,317 - B158DRAFT_2458 0.14 -0.5
633,317 - B158DRAFT_2458 0.14 -2.0
633,317 - B158DRAFT_2458 0.14 -0.2
633,351 + B158DRAFT_2458 0.17 +0.4
633,358 + B158DRAFT_2458 0.18 +1.0
633,481 + B158DRAFT_2458 0.30 -1.2
633,538 + B158DRAFT_2458 0.36 -0.8
633,538 + B158DRAFT_2458 0.36 -0.5
633,538 + B158DRAFT_2458 0.36 -0.2
633,541 - B158DRAFT_2458 0.36 +0.1
633,546 - B158DRAFT_2458 0.37 -1.4
633,546 - B158DRAFT_2458 0.37 -2.7
633,546 - B158DRAFT_2458 0.37 -0.1

Or see this region's nucleotide sequence