Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2395

Experiment: m.b. Sisomicin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2394 and B158DRAFT_2395 are separated by 57 nucleotidesB158DRAFT_2395 and B158DRAFT_2396 are separated by 265 nucleotides B158DRAFT_2394: B158DRAFT_2394 - diguanylate cyclase (GGDEF) domain, at 563,738 to 566,089 _2394 B158DRAFT_2395: B158DRAFT_2395 - phosphoenolpyruvate carboxykinase (ATP), at 566,147 to 567,748 _2395 B158DRAFT_2396: B158DRAFT_2396 - Geranylgeranyl pyrophosphate synthase, at 568,014 to 568,985 _2396 Position (kb) 566 567 568Strain fitness (log2 ratio) -2 -1 0 1 2at 565.226 kb on + strand, within B158DRAFT_2394at 565.347 kb on - strand, within B158DRAFT_2394at 565.452 kb on - strand, within B158DRAFT_2394at 565.539 kb on + strand, within B158DRAFT_2394at 565.571 kb on + strand, within B158DRAFT_2394at 565.571 kb on + strand, within B158DRAFT_2394at 565.571 kb on + strand, within B158DRAFT_2394at 565.571 kb on + strand, within B158DRAFT_2394at 565.647 kb on + strand, within B158DRAFT_2394at 565.704 kb on + strand, within B158DRAFT_2394at 565.931 kb on + strandat 566.065 kb on - strandat 566.176 kb on - strandat 566.300 kb on + strandat 566.363 kb on + strand, within B158DRAFT_2395at 566.365 kb on + strand, within B158DRAFT_2395at 566.368 kb on + strand, within B158DRAFT_2395at 566.371 kb on - strand, within B158DRAFT_2395at 566.426 kb on - strand, within B158DRAFT_2395at 566.446 kb on - strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.448 kb on + strand, within B158DRAFT_2395at 566.456 kb on - strand, within B158DRAFT_2395at 566.456 kb on - strand, within B158DRAFT_2395at 566.456 kb on - strand, within B158DRAFT_2395at 566.500 kb on + strand, within B158DRAFT_2395at 566.558 kb on + strand, within B158DRAFT_2395at 566.593 kb on - strand, within B158DRAFT_2395at 566.625 kb on - strand, within B158DRAFT_2395at 566.632 kb on - strand, within B158DRAFT_2395at 566.718 kb on + strand, within B158DRAFT_2395at 566.718 kb on + strand, within B158DRAFT_2395at 566.726 kb on - strand, within B158DRAFT_2395at 566.990 kb on - strand, within B158DRAFT_2395at 566.990 kb on - strand, within B158DRAFT_2395at 566.992 kb on - strand, within B158DRAFT_2395at 567.014 kb on - strand, within B158DRAFT_2395at 567.071 kb on + strand, within B158DRAFT_2395at 567.071 kb on + strand, within B158DRAFT_2395at 567.084 kb on - strand, within B158DRAFT_2395at 567.084 kb on - strand, within B158DRAFT_2395at 567.091 kb on - strand, within B158DRAFT_2395at 567.130 kb on - strand, within B158DRAFT_2395at 567.240 kb on - strand, within B158DRAFT_2395at 567.247 kb on + strand, within B158DRAFT_2395at 567.255 kb on - strand, within B158DRAFT_2395at 567.255 kb on - strand, within B158DRAFT_2395at 567.285 kb on - strand, within B158DRAFT_2395at 567.449 kb on - strand, within B158DRAFT_2395at 567.647 kb on + strandat 567.774 kb on + strandat 567.774 kb on + strandat 567.774 kb on + strandat 567.774 kb on + strandat 567.782 kb on - strandat 567.782 kb on - strandat 567.782 kb on - strandat 567.782 kb on - strandat 567.802 kb on + strandat 567.835 kb on + strandat 567.876 kb on - strandat 567.935 kb on + strandat 567.936 kb on + strandat 567.941 kb on + strandat 567.941 kb on + strandat 567.941 kb on + strandat 567.941 kb on + strandat 567.941 kb on + strandat 567.944 kb on - strandat 567.946 kb on + strandat 567.946 kb on + strandat 567.946 kb on + strandat 567.946 kb on + strandat 567.946 kb on + strandat 567.946 kb on + strandat 567.946 kb on + strandat 567.948 kb on + strandat 567.948 kb on + strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.954 kb on - strandat 567.956 kb on - strandat 568.012 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml
remove
565,226 + B158DRAFT_2394 0.63 -0.9
565,347 - B158DRAFT_2394 0.68 -0.7
565,452 - B158DRAFT_2394 0.73 -0.9
565,539 + B158DRAFT_2394 0.77 -2.2
565,571 + B158DRAFT_2394 0.78 +0.1
565,571 + B158DRAFT_2394 0.78 -0.9
565,571 + B158DRAFT_2394 0.78 -0.2
565,571 + B158DRAFT_2394 0.78 -2.2
565,647 + B158DRAFT_2394 0.81 +0.1
565,704 + B158DRAFT_2394 0.84 -0.8
565,931 + +0.4
566,065 - +0.1
566,176 - -0.8
566,300 + +0.6
566,363 + B158DRAFT_2395 0.13 -1.0
566,365 + B158DRAFT_2395 0.14 -0.1
566,368 + B158DRAFT_2395 0.14 -1.6
566,371 - B158DRAFT_2395 0.14 -0.4
566,426 - B158DRAFT_2395 0.17 -1.1
566,446 - B158DRAFT_2395 0.19 +0.2
566,448 + B158DRAFT_2395 0.19 -0.1
566,448 + B158DRAFT_2395 0.19 -1.3
566,448 + B158DRAFT_2395 0.19 -0.6
566,448 + B158DRAFT_2395 0.19 -2.6
566,448 + B158DRAFT_2395 0.19 -1.0
566,448 + B158DRAFT_2395 0.19 -1.0
566,456 - B158DRAFT_2395 0.19 +0.4
566,456 - B158DRAFT_2395 0.19 -2.3
566,456 - B158DRAFT_2395 0.19 -1.0
566,500 + B158DRAFT_2395 0.22 -1.8
566,558 + B158DRAFT_2395 0.26 -2.7
566,593 - B158DRAFT_2395 0.28 -2.1
566,625 - B158DRAFT_2395 0.30 -0.4
566,632 - B158DRAFT_2395 0.30 +1.2
566,718 + B158DRAFT_2395 0.36 +1.1
566,718 + B158DRAFT_2395 0.36 -1.8
566,726 - B158DRAFT_2395 0.36 +1.0
566,990 - B158DRAFT_2395 0.53 -0.0
566,990 - B158DRAFT_2395 0.53 -2.3
566,992 - B158DRAFT_2395 0.53 +0.6
567,014 - B158DRAFT_2395 0.54 +1.0
567,071 + B158DRAFT_2395 0.58 -1.4
567,071 + B158DRAFT_2395 0.58 -0.8
567,084 - B158DRAFT_2395 0.58 -1.1
567,084 - B158DRAFT_2395 0.58 -0.1
567,091 - B158DRAFT_2395 0.59 +1.0
567,130 - B158DRAFT_2395 0.61 +0.5
567,240 - B158DRAFT_2395 0.68 -0.5
567,247 + B158DRAFT_2395 0.69 -1.3
567,255 - B158DRAFT_2395 0.69 -0.7
567,255 - B158DRAFT_2395 0.69 +0.1
567,285 - B158DRAFT_2395 0.71 +0.3
567,449 - B158DRAFT_2395 0.81 +0.1
567,647 + -1.6
567,774 + -1.5
567,774 + -0.6
567,774 + -1.8
567,774 + -1.4
567,782 - +0.2
567,782 - -1.5
567,782 - +0.1
567,782 - -0.1
567,802 + -0.2
567,835 + -1.2
567,876 - -0.5
567,935 + +0.1
567,936 + -0.4
567,941 + +1.5
567,941 + +0.5
567,941 + -0.3
567,941 + -1.5
567,941 + -0.0
567,944 - -1.8
567,946 + +2.0
567,946 + -0.9
567,946 + -0.3
567,946 + -1.8
567,946 + -0.0
567,946 + -0.6
567,946 + -0.5
567,948 + +0.0
567,948 + -0.3
567,954 - -1.4
567,954 - +0.2
567,954 - -1.2
567,954 - -0.0
567,954 - -2.3
567,954 - -0.4
567,954 - -1.2
567,954 - +0.4
567,954 - +1.4
567,954 - -1.8
567,954 - +1.2
567,954 - +0.3
567,956 - -0.6
568,012 + -1.4

Or see this region's nucleotide sequence