Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2014

Experiment: m.b. Sisomicin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2013 and B158DRAFT_2014 are separated by 1 nucleotidesB158DRAFT_2014 and B158DRAFT_2015 are separated by 30 nucleotides B158DRAFT_2013: B158DRAFT_2013 - alanine racemase, at 143,223 to 144,317 _2013 B158DRAFT_2014: B158DRAFT_2014 - secondary thiamine-phosphate synthase enzyme, at 144,319 to 144,732 _2014 B158DRAFT_2015: B158DRAFT_2015 - hypothetical protein, at 144,763 to 145,476 _2015 Position (kb) 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 143.324 kb on + strandat 143.326 kb on - strandat 143.326 kb on - strandat 143.344 kb on + strand, within B158DRAFT_2013at 143.344 kb on + strand, within B158DRAFT_2013at 143.352 kb on - strand, within B158DRAFT_2013at 143.369 kb on + strand, within B158DRAFT_2013at 143.443 kb on + strand, within B158DRAFT_2013at 143.499 kb on - strand, within B158DRAFT_2013at 143.524 kb on - strand, within B158DRAFT_2013at 143.580 kb on + strand, within B158DRAFT_2013at 143.601 kb on + strand, within B158DRAFT_2013at 143.642 kb on + strand, within B158DRAFT_2013at 143.647 kb on + strand, within B158DRAFT_2013at 143.663 kb on + strand, within B158DRAFT_2013at 143.675 kb on + strand, within B158DRAFT_2013at 143.675 kb on + strand, within B158DRAFT_2013at 143.683 kb on - strand, within B158DRAFT_2013at 143.693 kb on + strand, within B158DRAFT_2013at 143.755 kb on - strand, within B158DRAFT_2013at 143.763 kb on - strand, within B158DRAFT_2013at 143.777 kb on + strand, within B158DRAFT_2013at 143.835 kb on + strand, within B158DRAFT_2013at 143.835 kb on + strand, within B158DRAFT_2013at 143.856 kb on + strand, within B158DRAFT_2013at 143.880 kb on + strand, within B158DRAFT_2013at 143.888 kb on - strand, within B158DRAFT_2013at 144.006 kb on - strand, within B158DRAFT_2013at 144.083 kb on + strand, within B158DRAFT_2013at 144.088 kb on + strand, within B158DRAFT_2013at 144.088 kb on + strand, within B158DRAFT_2013at 144.088 kb on + strand, within B158DRAFT_2013at 144.088 kb on + strand, within B158DRAFT_2013at 144.091 kb on - strand, within B158DRAFT_2013at 144.096 kb on - strand, within B158DRAFT_2013at 144.096 kb on - strand, within B158DRAFT_2013at 144.115 kb on - strand, within B158DRAFT_2013at 144.163 kb on + strand, within B158DRAFT_2013at 144.163 kb on + strand, within B158DRAFT_2013at 144.163 kb on + strand, within B158DRAFT_2013at 144.171 kb on - strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.184 kb on + strand, within B158DRAFT_2013at 144.186 kb on + strand, within B158DRAFT_2013at 144.186 kb on + strand, within B158DRAFT_2013at 144.189 kb on + strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.192 kb on - strand, within B158DRAFT_2013at 144.197 kb on - strand, within B158DRAFT_2013at 144.253 kb on - strandat 144.277 kb on - strandat 144.316 kb on + strandat 144.356 kb on + strandat 144.364 kb on - strand, within B158DRAFT_2014at 144.364 kb on - strand, within B158DRAFT_2014at 144.364 kb on - strand, within B158DRAFT_2014at 144.458 kb on - strand, within B158DRAFT_2014at 144.565 kb on + strand, within B158DRAFT_2014at 144.573 kb on + strand, within B158DRAFT_2014at 144.573 kb on + strand, within B158DRAFT_2014at 144.579 kb on - strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.588 kb on + strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.596 kb on - strand, within B158DRAFT_2014at 144.616 kb on - strand, within B158DRAFT_2014at 144.665 kb on + strand, within B158DRAFT_2014at 144.673 kb on - strand, within B158DRAFT_2014at 144.698 kb on - strandat 144.698 kb on - strandat 144.820 kb on + strandat 144.831 kb on + strandat 144.831 kb on + strandat 144.839 kb on - strand, within B158DRAFT_2015at 144.839 kb on - strand, within B158DRAFT_2015at 144.841 kb on + strand, within B158DRAFT_2015at 144.889 kb on + strand, within B158DRAFT_2015at 144.900 kb on + strand, within B158DRAFT_2015at 144.902 kb on - strand, within B158DRAFT_2015at 144.927 kb on - strand, within B158DRAFT_2015at 144.927 kb on - strand, within B158DRAFT_2015at 144.927 kb on - strand, within B158DRAFT_2015at 144.950 kb on + strand, within B158DRAFT_2015at 144.956 kb on - strand, within B158DRAFT_2015at 144.958 kb on - strand, within B158DRAFT_2015at 144.966 kb on + strand, within B158DRAFT_2015at 145.022 kb on + strand, within B158DRAFT_2015at 145.022 kb on + strand, within B158DRAFT_2015at 145.022 kb on + strand, within B158DRAFT_2015at 145.030 kb on - strand, within B158DRAFT_2015at 145.030 kb on - strand, within B158DRAFT_2015at 145.030 kb on - strand, within B158DRAFT_2015at 145.030 kb on - strand, within B158DRAFT_2015at 145.030 kb on - strand, within B158DRAFT_2015at 145.032 kb on + strand, within B158DRAFT_2015at 145.040 kb on - strand, within B158DRAFT_2015at 145.040 kb on - strand, within B158DRAFT_2015at 145.040 kb on - strand, within B158DRAFT_2015at 145.040 kb on - strand, within B158DRAFT_2015at 145.040 kb on - strand, within B158DRAFT_2015at 145.047 kb on - strand, within B158DRAFT_2015at 145.064 kb on + strand, within B158DRAFT_2015at 145.176 kb on - strand, within B158DRAFT_2015at 145.179 kb on - strand, within B158DRAFT_2015at 145.190 kb on + strand, within B158DRAFT_2015at 145.190 kb on + strand, within B158DRAFT_2015at 145.218 kb on + strand, within B158DRAFT_2015at 145.250 kb on - strand, within B158DRAFT_2015at 145.260 kb on + strand, within B158DRAFT_2015at 145.284 kb on + strand, within B158DRAFT_2015at 145.292 kb on - strand, within B158DRAFT_2015at 145.298 kb on - strand, within B158DRAFT_2015at 145.326 kb on - strand, within B158DRAFT_2015at 145.337 kb on + strand, within B158DRAFT_2015at 145.351 kb on + strand, within B158DRAFT_2015at 145.395 kb on + strand, within B158DRAFT_2015at 145.402 kb on + strand, within B158DRAFT_2015at 145.410 kb on - strandat 145.412 kb on + strandat 145.412 kb on + strandat 145.412 kb on + strandat 145.412 kb on + strandat 145.420 kb on - strandat 145.420 kb on - strandat 145.420 kb on - strandat 145.473 kb on - strandat 145.473 kb on - strandat 145.473 kb on - strandat 145.480 kb on + strandat 145.537 kb on + strandat 145.537 kb on + strandat 145.537 kb on + strandat 145.537 kb on + strandat 145.537 kb on + strandat 145.538 kb on + strandat 145.538 kb on + strandat 145.616 kb on + strandat 145.616 kb on + strandat 145.624 kb on - strandat 145.624 kb on - strandat 145.624 kb on - strandat 145.624 kb on - strandat 145.640 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml
remove
143,324 + +1.2
143,326 - -1.0
143,326 - +0.5
143,344 + B158DRAFT_2013 0.11 -1.1
143,344 + B158DRAFT_2013 0.11 -2.6
143,352 - B158DRAFT_2013 0.12 +0.7
143,369 + B158DRAFT_2013 0.13 +1.2
143,443 + B158DRAFT_2013 0.20 -0.2
143,499 - B158DRAFT_2013 0.25 +1.8
143,524 - B158DRAFT_2013 0.27 +1.1
143,580 + B158DRAFT_2013 0.33 -0.3
143,601 + B158DRAFT_2013 0.35 -1.5
143,642 + B158DRAFT_2013 0.38 +0.4
143,647 + B158DRAFT_2013 0.39 +0.4
143,663 + B158DRAFT_2013 0.40 -1.5
143,675 + B158DRAFT_2013 0.41 -2.2
143,675 + B158DRAFT_2013 0.41 -2.4
143,683 - B158DRAFT_2013 0.42 -1.1
143,693 + B158DRAFT_2013 0.43 -0.8
143,755 - B158DRAFT_2013 0.49 -0.9
143,763 - B158DRAFT_2013 0.49 +0.2
143,777 + B158DRAFT_2013 0.51 -0.3
143,835 + B158DRAFT_2013 0.56 -1.0
143,835 + B158DRAFT_2013 0.56 +0.1
143,856 + B158DRAFT_2013 0.58 -2.9
143,880 + B158DRAFT_2013 0.60 -1.6
143,888 - B158DRAFT_2013 0.61 -0.8
144,006 - B158DRAFT_2013 0.72 -0.4
144,083 + B158DRAFT_2013 0.79 +2.6
144,088 + B158DRAFT_2013 0.79 -2.1
144,088 + B158DRAFT_2013 0.79 -1.5
144,088 + B158DRAFT_2013 0.79 -1.1
144,088 + B158DRAFT_2013 0.79 +2.0
144,091 - B158DRAFT_2013 0.79 +0.4
144,096 - B158DRAFT_2013 0.80 -0.9
144,096 - B158DRAFT_2013 0.80 -1.8
144,115 - B158DRAFT_2013 0.81 -1.5
144,163 + B158DRAFT_2013 0.86 -0.8
144,163 + B158DRAFT_2013 0.86 -2.0
144,163 + B158DRAFT_2013 0.86 -0.1
144,171 - B158DRAFT_2013 0.87 -0.5
144,184 + B158DRAFT_2013 0.88 +0.9
144,184 + B158DRAFT_2013 0.88 -0.8
144,184 + B158DRAFT_2013 0.88 -0.8
144,184 + B158DRAFT_2013 0.88 -1.4
144,184 + B158DRAFT_2013 0.88 +0.9
144,184 + B158DRAFT_2013 0.88 -1.7
144,184 + B158DRAFT_2013 0.88 +0.0
144,184 + B158DRAFT_2013 0.88 +2.1
144,184 + B158DRAFT_2013 0.88 -2.4
144,184 + B158DRAFT_2013 0.88 -0.1
144,184 + B158DRAFT_2013 0.88 -3.1
144,184 + B158DRAFT_2013 0.88 -1.1
144,184 + B158DRAFT_2013 0.88 +0.1
144,184 + B158DRAFT_2013 0.88 -0.4
144,184 + B158DRAFT_2013 0.88 -1.0
144,184 + B158DRAFT_2013 0.88 -0.0
144,184 + B158DRAFT_2013 0.88 -0.1
144,186 + B158DRAFT_2013 0.88 -0.0
144,186 + B158DRAFT_2013 0.88 -1.2
144,189 + B158DRAFT_2013 0.88 -0.1
144,192 - B158DRAFT_2013 0.88 -0.5
144,192 - B158DRAFT_2013 0.88 -0.5
144,192 - B158DRAFT_2013 0.88 -2.4
144,192 - B158DRAFT_2013 0.88 -0.5
144,192 - B158DRAFT_2013 0.88 +3.0
144,192 - B158DRAFT_2013 0.88 -2.1
144,192 - B158DRAFT_2013 0.88 -1.5
144,192 - B158DRAFT_2013 0.88 -2.1
144,192 - B158DRAFT_2013 0.88 -1.8
144,192 - B158DRAFT_2013 0.88 -0.5
144,192 - B158DRAFT_2013 0.88 -2.6
144,192 - B158DRAFT_2013 0.88 -0.2
144,192 - B158DRAFT_2013 0.88 -0.3
144,192 - B158DRAFT_2013 0.88 -0.1
144,192 - B158DRAFT_2013 0.88 -1.1
144,192 - B158DRAFT_2013 0.88 -2.0
144,192 - B158DRAFT_2013 0.88 -0.3
144,192 - B158DRAFT_2013 0.88 +0.3
144,192 - B158DRAFT_2013 0.88 +1.9
144,192 - B158DRAFT_2013 0.88 +2.6
144,197 - B158DRAFT_2013 0.89 -0.4
144,253 - -0.1
144,277 - -1.0
144,316 + -0.9
144,356 + -0.4
144,364 - B158DRAFT_2014 0.11 +0.3
144,364 - B158DRAFT_2014 0.11 -0.5
144,364 - B158DRAFT_2014 0.11 -0.8
144,458 - B158DRAFT_2014 0.34 -0.4
144,565 + B158DRAFT_2014 0.59 +0.7
144,573 + B158DRAFT_2014 0.61 +0.1
144,573 + B158DRAFT_2014 0.61 -1.5
144,579 - B158DRAFT_2014 0.63 +0.2
144,588 + B158DRAFT_2014 0.65 -1.5
144,588 + B158DRAFT_2014 0.65 +2.9
144,588 + B158DRAFT_2014 0.65 -0.3
144,588 + B158DRAFT_2014 0.65 +1.3
144,588 + B158DRAFT_2014 0.65 -0.0
144,588 + B158DRAFT_2014 0.65 +1.0
144,588 + B158DRAFT_2014 0.65 +0.6
144,588 + B158DRAFT_2014 0.65 -2.1
144,588 + B158DRAFT_2014 0.65 +1.0
144,588 + B158DRAFT_2014 0.65 -1.3
144,588 + B158DRAFT_2014 0.65 +0.1
144,588 + B158DRAFT_2014 0.65 -0.3
144,588 + B158DRAFT_2014 0.65 -1.2
144,588 + B158DRAFT_2014 0.65 +0.8
144,588 + B158DRAFT_2014 0.65 -0.5
144,588 + B158DRAFT_2014 0.65 -0.2
144,588 + B158DRAFT_2014 0.65 -2.3
144,588 + B158DRAFT_2014 0.65 -2.4
144,588 + B158DRAFT_2014 0.65 -0.5
144,588 + B158DRAFT_2014 0.65 -1.5
144,588 + B158DRAFT_2014 0.65 +1.8
144,588 + B158DRAFT_2014 0.65 -1.1
144,588 + B158DRAFT_2014 0.65 +2.1
144,596 - B158DRAFT_2014 0.67 -1.4
144,596 - B158DRAFT_2014 0.67 +0.8
144,596 - B158DRAFT_2014 0.67 +0.6
144,596 - B158DRAFT_2014 0.67 -0.6
144,596 - B158DRAFT_2014 0.67 +0.6
144,596 - B158DRAFT_2014 0.67 -1.4
144,596 - B158DRAFT_2014 0.67 -2.1
144,596 - B158DRAFT_2014 0.67 +1.9
144,596 - B158DRAFT_2014 0.67 +0.2
144,596 - B158DRAFT_2014 0.67 -0.2
144,596 - B158DRAFT_2014 0.67 +0.3
144,596 - B158DRAFT_2014 0.67 -1.2
144,596 - B158DRAFT_2014 0.67 +0.1
144,596 - B158DRAFT_2014 0.67 -0.4
144,596 - B158DRAFT_2014 0.67 +1.6
144,596 - B158DRAFT_2014 0.67 +0.7
144,596 - B158DRAFT_2014 0.67 -0.4
144,616 - B158DRAFT_2014 0.72 +0.5
144,665 + B158DRAFT_2014 0.84 -0.3
144,673 - B158DRAFT_2014 0.86 -2.2
144,698 - +0.4
144,698 - -0.4
144,820 + +0.5
144,831 + -1.1
144,831 + -1.1
144,839 - B158DRAFT_2015 0.11 +0.4
144,839 - B158DRAFT_2015 0.11 -2.5
144,841 + B158DRAFT_2015 0.11 +1.3
144,889 + B158DRAFT_2015 0.18 +0.1
144,900 + B158DRAFT_2015 0.19 +0.1
144,902 - B158DRAFT_2015 0.19 +3.3
144,927 - B158DRAFT_2015 0.23 +0.4
144,927 - B158DRAFT_2015 0.23 +0.1
144,927 - B158DRAFT_2015 0.23 -0.4
144,950 + B158DRAFT_2015 0.26 +0.6
144,956 - B158DRAFT_2015 0.27 -0.1
144,958 - B158DRAFT_2015 0.27 +2.2
144,966 + B158DRAFT_2015 0.28 +0.6
145,022 + B158DRAFT_2015 0.36 -1.1
145,022 + B158DRAFT_2015 0.36 +0.8
145,022 + B158DRAFT_2015 0.36 -0.2
145,030 - B158DRAFT_2015 0.37 -1.0
145,030 - B158DRAFT_2015 0.37 +0.2
145,030 - B158DRAFT_2015 0.37 -1.4
145,030 - B158DRAFT_2015 0.37 -0.5
145,030 - B158DRAFT_2015 0.37 -0.6
145,032 + B158DRAFT_2015 0.38 -0.9
145,040 - B158DRAFT_2015 0.39 +0.3
145,040 - B158DRAFT_2015 0.39 -0.4
145,040 - B158DRAFT_2015 0.39 +0.8
145,040 - B158DRAFT_2015 0.39 +2.9
145,040 - B158DRAFT_2015 0.39 -0.6
145,047 - B158DRAFT_2015 0.40 -0.2
145,064 + B158DRAFT_2015 0.42 -0.9
145,176 - B158DRAFT_2015 0.58 -0.8
145,179 - B158DRAFT_2015 0.58 -0.8
145,190 + B158DRAFT_2015 0.60 +1.5
145,190 + B158DRAFT_2015 0.60 -0.3
145,218 + B158DRAFT_2015 0.64 -0.8
145,250 - B158DRAFT_2015 0.68 -0.1
145,260 + B158DRAFT_2015 0.70 -1.3
145,284 + B158DRAFT_2015 0.73 +0.2
145,292 - B158DRAFT_2015 0.74 -1.9
145,298 - B158DRAFT_2015 0.75 +0.5
145,326 - B158DRAFT_2015 0.79 -0.1
145,337 + B158DRAFT_2015 0.80 -0.7
145,351 + B158DRAFT_2015 0.82 -2.4
145,395 + B158DRAFT_2015 0.89 -1.3
145,402 + B158DRAFT_2015 0.89 -0.5
145,410 - -0.3
145,412 + -0.5
145,412 + +1.5
145,412 + +1.7
145,412 + +0.9
145,420 - +2.4
145,420 - +0.3
145,420 - -0.8
145,473 - -0.6
145,473 - -2.6
145,473 - -1.4
145,480 + -0.5
145,537 + -2.2
145,537 + -1.0
145,537 + -0.7
145,537 + +0.9
145,537 + -0.9
145,538 + -2.2
145,538 + -1.1
145,616 + -0.0
145,616 + -2.0
145,624 - +3.3
145,624 - +0.9
145,624 - -2.7
145,624 - +1.3
145,640 - +0.4

Or see this region's nucleotide sequence