Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1951

Experiment: m.b. Sisomicin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1950 and B158DRAFT_1951 are separated by 47 nucleotidesB158DRAFT_1951 and B158DRAFT_1952 are separated by 184 nucleotidesB158DRAFT_1952 and B158DRAFT_1953 are separated by 159 nucleotides B158DRAFT_1950: B158DRAFT_1950 - DNA mismatch repair protein MutL, at 86,141 to 87,901 _1950 B158DRAFT_1951: B158DRAFT_1951 - tRNA dimethylallyltransferase, at 87,949 to 88,902 _1951 B158DRAFT_1952: B158DRAFT_1952 - RNA chaperone Hfq, at 89,087 to 89,434 _1952 B158DRAFT_1953: B158DRAFT_1953 - GTP-binding protein HflX, at 89,594 to 90,892 _1953 Position (kb) 87 88 89Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 86.972 kb on - strand, within B158DRAFT_1950at 87.010 kb on - strand, within B158DRAFT_1950at 87.039 kb on - strand, within B158DRAFT_1950at 87.081 kb on - strand, within B158DRAFT_1950at 87.129 kb on - strand, within B158DRAFT_1950at 87.129 kb on - strand, within B158DRAFT_1950at 87.129 kb on - strand, within B158DRAFT_1950at 87.154 kb on - strand, within B158DRAFT_1950at 87.167 kb on + strand, within B158DRAFT_1950at 87.232 kb on + strand, within B158DRAFT_1950at 87.355 kb on + strand, within B158DRAFT_1950at 87.363 kb on - strand, within B158DRAFT_1950at 87.444 kb on + strand, within B158DRAFT_1950at 87.451 kb on + strand, within B158DRAFT_1950at 87.452 kb on - strand, within B158DRAFT_1950at 87.452 kb on - strand, within B158DRAFT_1950at 87.480 kb on - strand, within B158DRAFT_1950at 87.500 kb on + strand, within B158DRAFT_1950at 87.514 kb on + strand, within B158DRAFT_1950at 87.628 kb on + strand, within B158DRAFT_1950at 87.628 kb on + strand, within B158DRAFT_1950at 87.636 kb on - strand, within B158DRAFT_1950at 87.653 kb on + strand, within B158DRAFT_1950at 87.725 kb on + strand, within B158DRAFT_1950at 87.757 kb on + strandat 87.757 kb on + strandat 87.804 kb on + strandat 87.812 kb on - strandat 87.853 kb on + strandat 87.853 kb on + strandat 87.853 kb on + strandat 87.861 kb on + strandat 87.861 kb on - strandat 87.861 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.925 kb on + strandat 87.960 kb on + strandat 88.050 kb on + strand, within B158DRAFT_1951at 88.050 kb on + strand, within B158DRAFT_1951at 88.070 kb on + strand, within B158DRAFT_1951at 88.070 kb on + strand, within B158DRAFT_1951at 88.073 kb on - strand, within B158DRAFT_1951at 88.096 kb on + strand, within B158DRAFT_1951at 88.102 kb on + strand, within B158DRAFT_1951at 88.132 kb on + strand, within B158DRAFT_1951at 88.132 kb on + strand, within B158DRAFT_1951at 88.132 kb on + strand, within B158DRAFT_1951at 88.137 kb on + strand, within B158DRAFT_1951at 88.140 kb on - strand, within B158DRAFT_1951at 88.152 kb on - strand, within B158DRAFT_1951at 88.182 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.372 kb on + strand, within B158DRAFT_1951at 88.380 kb on - strand, within B158DRAFT_1951at 88.380 kb on - strand, within B158DRAFT_1951at 88.424 kb on + strand, within B158DRAFT_1951at 88.432 kb on - strand, within B158DRAFT_1951at 88.456 kb on + strand, within B158DRAFT_1951at 88.492 kb on + strand, within B158DRAFT_1951at 88.492 kb on + strand, within B158DRAFT_1951at 88.492 kb on + strand, within B158DRAFT_1951at 88.500 kb on - strand, within B158DRAFT_1951at 88.560 kb on + strand, within B158DRAFT_1951at 88.560 kb on + strand, within B158DRAFT_1951at 88.580 kb on + strand, within B158DRAFT_1951at 88.651 kb on + strand, within B158DRAFT_1951at 88.686 kb on - strand, within B158DRAFT_1951at 88.743 kb on - strand, within B158DRAFT_1951at 88.759 kb on - strand, within B158DRAFT_1951at 88.774 kb on - strand, within B158DRAFT_1951at 88.794 kb on + strand, within B158DRAFT_1951at 88.794 kb on + strand, within B158DRAFT_1951at 88.809 kb on + strandat 88.809 kb on + strandat 88.817 kb on - strandat 88.835 kb on + strandat 88.835 kb on + strandat 88.852 kb on + strandat 88.853 kb on + strandat 88.855 kb on + strandat 88.860 kb on - strandat 88.860 kb on - strandat 88.860 kb on - strandat 88.860 kb on - strandat 88.972 kb on - strandat 89.036 kb on + strandat 89.043 kb on - strandat 89.077 kb on + strandat 89.085 kb on - strandat 89.085 kb on - strandat 89.085 kb on - strandat 89.085 kb on - strandat 89.096 kb on - strandat 89.105 kb on + strandat 89.164 kb on + strand, within B158DRAFT_1952at 89.172 kb on + strand, within B158DRAFT_1952at 89.172 kb on + strand, within B158DRAFT_1952at 89.261 kb on + strand, within B158DRAFT_1952at 89.288 kb on + strand, within B158DRAFT_1952at 89.355 kb on - strand, within B158DRAFT_1952at 89.468 kb on - strandat 89.501 kb on + strandat 89.501 kb on + strandat 89.509 kb on - strandat 89.579 kb on - strandat 89.613 kb on - strandat 89.618 kb on - strandat 89.655 kb on + strandat 89.655 kb on + strandat 89.662 kb on - strandat 89.663 kb on - strandat 89.699 kb on + strandat 89.704 kb on + strandat 89.704 kb on + strandat 89.704 kb on + strandat 89.726 kb on - strand, within B158DRAFT_1953at 89.750 kb on - strand, within B158DRAFT_1953at 89.760 kb on - strand, within B158DRAFT_1953at 89.808 kb on - strand, within B158DRAFT_1953at 89.808 kb on - strand, within B158DRAFT_1953at 89.854 kb on + strand, within B158DRAFT_1953at 89.854 kb on + strand, within B158DRAFT_1953at 89.854 kb on + strand, within B158DRAFT_1953at 89.862 kb on - strand, within B158DRAFT_1953at 89.862 kb on - strand, within B158DRAFT_1953at 89.872 kb on + strand, within B158DRAFT_1953at 89.872 kb on + strand, within B158DRAFT_1953at 89.872 kb on + strand, within B158DRAFT_1953at 89.880 kb on - strand, within B158DRAFT_1953at 89.880 kb on - strand, within B158DRAFT_1953at 89.880 kb on - strand, within B158DRAFT_1953at 89.889 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.897 kb on - strand, within B158DRAFT_1953at 89.899 kb on - strand, within B158DRAFT_1953at 89.899 kb on - strand, within B158DRAFT_1953

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml
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86,972 - B158DRAFT_1950 0.47 +1.6
87,010 - B158DRAFT_1950 0.49 -0.3
87,039 - B158DRAFT_1950 0.51 -1.6
87,081 - B158DRAFT_1950 0.53 +2.9
87,129 - B158DRAFT_1950 0.56 +3.8
87,129 - B158DRAFT_1950 0.56 -0.8
87,129 - B158DRAFT_1950 0.56 +0.4
87,154 - B158DRAFT_1950 0.58 -0.6
87,167 + B158DRAFT_1950 0.58 +1.2
87,232 + B158DRAFT_1950 0.62 +7.3
87,355 + B158DRAFT_1950 0.69 +1.0
87,363 - B158DRAFT_1950 0.69 -0.4
87,444 + B158DRAFT_1950 0.74 +1.4
87,451 + B158DRAFT_1950 0.74 +4.8
87,452 - B158DRAFT_1950 0.74 -2.7
87,452 - B158DRAFT_1950 0.74 +2.8
87,480 - B158DRAFT_1950 0.76 +3.2
87,500 + B158DRAFT_1950 0.77 +1.3
87,514 + B158DRAFT_1950 0.78 +4.0
87,628 + B158DRAFT_1950 0.84 +5.3
87,628 + B158DRAFT_1950 0.84 -0.2
87,636 - B158DRAFT_1950 0.85 -0.7
87,653 + B158DRAFT_1950 0.86 +7.9
87,725 + B158DRAFT_1950 0.90 -2.0
87,757 + +3.3
87,757 + +7.0
87,804 + +4.4
87,812 - +7.4
87,853 + +5.0
87,853 + +4.4
87,853 + +1.1
87,861 + -1.2
87,861 - -0.4
87,861 - -1.6
87,869 - -0.7
87,869 - +2.0
87,869 - +0.5
87,869 - +2.8
87,869 - -0.7
87,925 + +1.1
87,960 + -1.5
88,050 + B158DRAFT_1951 0.11 +1.4
88,050 + B158DRAFT_1951 0.11 -1.1
88,070 + B158DRAFT_1951 0.13 +0.4
88,070 + B158DRAFT_1951 0.13 +0.1
88,073 - B158DRAFT_1951 0.13 +1.4
88,096 + B158DRAFT_1951 0.15 +0.1
88,102 + B158DRAFT_1951 0.16 +0.8
88,132 + B158DRAFT_1951 0.19 -1.9
88,132 + B158DRAFT_1951 0.19 +2.6
88,132 + B158DRAFT_1951 0.19 -0.5
88,137 + B158DRAFT_1951 0.20 -0.5
88,140 - B158DRAFT_1951 0.20 +0.3
88,152 - B158DRAFT_1951 0.21 -0.1
88,182 + B158DRAFT_1951 0.24 +0.3
88,245 + B158DRAFT_1951 0.31 +1.8
88,245 + B158DRAFT_1951 0.31 -0.8
88,245 + B158DRAFT_1951 0.31 -0.1
88,245 + B158DRAFT_1951 0.31 -0.9
88,245 + B158DRAFT_1951 0.31 +0.0
88,245 + B158DRAFT_1951 0.31 -0.2
88,245 + B158DRAFT_1951 0.31 +0.5
88,245 + B158DRAFT_1951 0.31 -2.7
88,245 + B158DRAFT_1951 0.31 -0.3
88,245 + B158DRAFT_1951 0.31 -0.9
88,253 - B158DRAFT_1951 0.32 -0.6
88,253 - B158DRAFT_1951 0.32 +0.3
88,253 - B158DRAFT_1951 0.32 +0.9
88,253 - B158DRAFT_1951 0.32 -0.5
88,253 - B158DRAFT_1951 0.32 +0.7
88,253 - B158DRAFT_1951 0.32 -0.7
88,253 - B158DRAFT_1951 0.32 +0.9
88,372 + B158DRAFT_1951 0.44 +0.1
88,380 - B158DRAFT_1951 0.45 -0.6
88,380 - B158DRAFT_1951 0.45 -0.8
88,424 + B158DRAFT_1951 0.50 -0.7
88,432 - B158DRAFT_1951 0.51 -1.9
88,456 + B158DRAFT_1951 0.53 +0.2
88,492 + B158DRAFT_1951 0.57 -1.4
88,492 + B158DRAFT_1951 0.57 +0.2
88,492 + B158DRAFT_1951 0.57 +0.2
88,500 - B158DRAFT_1951 0.58 +1.1
88,560 + B158DRAFT_1951 0.64 -2.2
88,560 + B158DRAFT_1951 0.64 +0.1
88,580 + B158DRAFT_1951 0.66 +1.0
88,651 + B158DRAFT_1951 0.74 -0.0
88,686 - B158DRAFT_1951 0.77 -0.6
88,743 - B158DRAFT_1951 0.83 -0.9
88,759 - B158DRAFT_1951 0.85 +1.1
88,774 - B158DRAFT_1951 0.86 +1.6
88,794 + B158DRAFT_1951 0.89 +0.0
88,794 + B158DRAFT_1951 0.89 +0.4
88,809 + +0.0
88,809 + +0.2
88,817 - -0.9
88,835 + -0.6
88,835 + +0.9
88,852 + -0.3
88,853 + -0.1
88,855 + -3.1
88,860 - -0.1
88,860 - -0.3
88,860 - -0.7
88,860 - +1.4
88,972 - +9.4
89,036 + +8.2
89,043 - +9.4
89,077 + +9.5
89,085 - +9.5
89,085 - +9.1
89,085 - +9.8
89,085 - +9.6
89,096 - +9.2
89,105 + +9.1
89,164 + B158DRAFT_1952 0.22 +9.0
89,172 + B158DRAFT_1952 0.24 +9.4
89,172 + B158DRAFT_1952 0.24 +10.0
89,261 + B158DRAFT_1952 0.50 +9.0
89,288 + B158DRAFT_1952 0.58 +6.4
89,355 - B158DRAFT_1952 0.77 +8.8
89,468 - +2.4
89,501 + +0.2
89,501 + -0.9
89,509 - -1.0
89,579 - -0.5
89,613 - -0.4
89,618 - -0.9
89,655 + -0.8
89,655 + -0.7
89,662 - -0.6
89,663 - -1.0
89,699 + -0.7
89,704 + -0.8
89,704 + +0.4
89,704 + -0.2
89,726 - B158DRAFT_1953 0.10 -1.1
89,750 - B158DRAFT_1953 0.12 -1.7
89,760 - B158DRAFT_1953 0.13 -0.1
89,808 - B158DRAFT_1953 0.16 -0.4
89,808 - B158DRAFT_1953 0.16 -0.5
89,854 + B158DRAFT_1953 0.20 +7.2
89,854 + B158DRAFT_1953 0.20 +2.7
89,854 + B158DRAFT_1953 0.20 -1.1
89,862 - B158DRAFT_1953 0.21 +3.0
89,862 - B158DRAFT_1953 0.21 -0.7
89,872 + B158DRAFT_1953 0.21 -2.0
89,872 + B158DRAFT_1953 0.21 -3.0
89,872 + B158DRAFT_1953 0.21 -2.6
89,880 - B158DRAFT_1953 0.22 +0.2
89,880 - B158DRAFT_1953 0.22 +0.7
89,880 - B158DRAFT_1953 0.22 -0.7
89,889 + B158DRAFT_1953 0.23 +0.4
89,891 + B158DRAFT_1953 0.23 -2.1
89,891 + B158DRAFT_1953 0.23 +0.0
89,891 + B158DRAFT_1953 0.23 +0.1
89,891 + B158DRAFT_1953 0.23 -1.2
89,891 + B158DRAFT_1953 0.23 -0.5
89,897 - B158DRAFT_1953 0.23 -0.1
89,899 - B158DRAFT_1953 0.23 -1.9
89,899 - B158DRAFT_1953 0.23 -0.9

Or see this region's nucleotide sequence