Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1817

Experiment: m.b. Sisomicin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1814 and B158DRAFT_1815 are separated by 2 nucleotidesB158DRAFT_1815 and B158DRAFT_1816 are separated by 72 nucleotidesB158DRAFT_1816 and B158DRAFT_1817 are separated by 15 nucleotidesB158DRAFT_1817 and B158DRAFT_1818 are separated by 37 nucleotidesB158DRAFT_1818 and B158DRAFT_1819 are separated by 2 nucleotides B158DRAFT_1814: B158DRAFT_1814 - Predicted enzyme related to lactoylglutathione lyase, at 1,914,213 to 1,914,590 _1814 B158DRAFT_1815: B158DRAFT_1815 - Rhodanese-related sulfurtransferase, at 1,914,593 to 1,915,273 _1815 B158DRAFT_1816: B158DRAFT_1816 - tRNA_Arg_CCT, at 1,915,346 to 1,915,422 _1816 B158DRAFT_1817: B158DRAFT_1817 - seryl-tRNA synthetase (EC 6.1.1.11), at 1,915,438 to 1,916,706 _1817 B158DRAFT_1818: B158DRAFT_1818 - protein CrcB, at 1,916,744 to 1,917,127 _1818 B158DRAFT_1819: B158DRAFT_1819 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 1,917,130 to 1,918,467 _1819 Position (kb) 1915 1916 1917Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1914.484 kb on - strand, within B158DRAFT_1814at 1914.638 kb on - strandat 1914.645 kb on + strandat 1914.645 kb on + strandat 1914.645 kb on + strandat 1914.653 kb on - strandat 1914.709 kb on + strand, within B158DRAFT_1815at 1914.744 kb on + strand, within B158DRAFT_1815at 1914.772 kb on + strand, within B158DRAFT_1815at 1914.773 kb on + strand, within B158DRAFT_1815at 1914.781 kb on - strand, within B158DRAFT_1815at 1914.792 kb on - strand, within B158DRAFT_1815at 1914.896 kb on + strand, within B158DRAFT_1815at 1914.901 kb on + strand, within B158DRAFT_1815at 1914.901 kb on + strand, within B158DRAFT_1815at 1914.909 kb on - strand, within B158DRAFT_1815at 1914.925 kb on + strand, within B158DRAFT_1815at 1914.982 kb on - strand, within B158DRAFT_1815at 1914.993 kb on - strand, within B158DRAFT_1815at 1914.993 kb on - strand, within B158DRAFT_1815at 1915.031 kb on + strand, within B158DRAFT_1815at 1915.031 kb on + strand, within B158DRAFT_1815at 1915.031 kb on + strand, within B158DRAFT_1815at 1915.032 kb on - strand, within B158DRAFT_1815at 1915.040 kb on + strand, within B158DRAFT_1815at 1915.048 kb on - strand, within B158DRAFT_1815at 1915.061 kb on + strand, within B158DRAFT_1815at 1915.061 kb on + strand, within B158DRAFT_1815at 1915.077 kb on - strand, within B158DRAFT_1815at 1915.079 kb on + strand, within B158DRAFT_1815at 1915.087 kb on - strand, within B158DRAFT_1815at 1915.087 kb on - strand, within B158DRAFT_1815at 1915.156 kb on - strand, within B158DRAFT_1815at 1915.165 kb on - strand, within B158DRAFT_1815at 1915.165 kb on - strand, within B158DRAFT_1815at 1915.172 kb on + strand, within B158DRAFT_1815at 1915.173 kb on - strand, within B158DRAFT_1815at 1915.173 kb on - strand, within B158DRAFT_1815at 1915.180 kb on - strand, within B158DRAFT_1815at 1915.180 kb on - strand, within B158DRAFT_1815at 1915.327 kb on - strandat 1915.388 kb on - strand, within B158DRAFT_1816at 1915.388 kb on - strand, within B158DRAFT_1816at 1915.397 kb on + strand, within B158DRAFT_1816at 1915.405 kb on - strand, within B158DRAFT_1816at 1915.405 kb on - strand, within B158DRAFT_1816at 1915.408 kb on - strand, within B158DRAFT_1816at 1915.453 kb on + strandat 1916.829 kb on + strand, within B158DRAFT_1818at 1916.829 kb on + strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.864 kb on + strand, within B158DRAFT_1818at 1917.015 kb on - strand, within B158DRAFT_1818at 1917.093 kb on - strandat 1917.128 kb on + strandat 1917.152 kb on + strandat 1917.160 kb on - strandat 1917.160 kb on - strandat 1917.166 kb on - strandat 1917.166 kb on - strandat 1917.205 kb on + strandat 1917.205 kb on + strandat 1917.220 kb on + strandat 1917.220 kb on - strandat 1917.220 kb on - strandat 1917.220 kb on - strandat 1917.220 kb on - strandat 1917.261 kb on - strandat 1917.303 kb on - strand, within B158DRAFT_1819at 1917.355 kb on + strand, within B158DRAFT_1819at 1917.418 kb on - strand, within B158DRAFT_1819at 1917.430 kb on - strand, within B158DRAFT_1819at 1917.488 kb on - strand, within B158DRAFT_1819at 1917.528 kb on + strand, within B158DRAFT_1819at 1917.528 kb on + strand, within B158DRAFT_1819at 1917.529 kb on + strand, within B158DRAFT_1819at 1917.537 kb on - strand, within B158DRAFT_1819at 1917.691 kb on - strand, within B158DRAFT_1819

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml
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1,914,484 - B158DRAFT_1814 0.72 -0.7
1,914,638 - +0.2
1,914,645 + +1.0
1,914,645 + +0.5
1,914,645 + -0.4
1,914,653 - -1.5
1,914,709 + B158DRAFT_1815 0.17 +0.9
1,914,744 + B158DRAFT_1815 0.22 -0.1
1,914,772 + B158DRAFT_1815 0.26 -1.7
1,914,773 + B158DRAFT_1815 0.26 -0.1
1,914,781 - B158DRAFT_1815 0.28 +0.3
1,914,792 - B158DRAFT_1815 0.29 -1.0
1,914,896 + B158DRAFT_1815 0.44 +0.4
1,914,901 + B158DRAFT_1815 0.45 -1.7
1,914,901 + B158DRAFT_1815 0.45 +0.6
1,914,909 - B158DRAFT_1815 0.46 +0.3
1,914,925 + B158DRAFT_1815 0.49 -0.7
1,914,982 - B158DRAFT_1815 0.57 -0.9
1,914,993 - B158DRAFT_1815 0.59 -0.2
1,914,993 - B158DRAFT_1815 0.59 +3.9
1,915,031 + B158DRAFT_1815 0.64 +0.6
1,915,031 + B158DRAFT_1815 0.64 -1.3
1,915,031 + B158DRAFT_1815 0.64 -1.2
1,915,032 - B158DRAFT_1815 0.64 +0.3
1,915,040 + B158DRAFT_1815 0.66 +1.0
1,915,048 - B158DRAFT_1815 0.67 -1.4
1,915,061 + B158DRAFT_1815 0.69 -0.3
1,915,061 + B158DRAFT_1815 0.69 -0.4
1,915,077 - B158DRAFT_1815 0.71 +0.9
1,915,079 + B158DRAFT_1815 0.71 +0.2
1,915,087 - B158DRAFT_1815 0.73 -0.6
1,915,087 - B158DRAFT_1815 0.73 -0.5
1,915,156 - B158DRAFT_1815 0.83 -0.3
1,915,165 - B158DRAFT_1815 0.84 -0.9
1,915,165 - B158DRAFT_1815 0.84 -0.3
1,915,172 + B158DRAFT_1815 0.85 -0.7
1,915,173 - B158DRAFT_1815 0.85 -2.3
1,915,173 - B158DRAFT_1815 0.85 -0.2
1,915,180 - B158DRAFT_1815 0.86 -0.9
1,915,180 - B158DRAFT_1815 0.86 +0.9
1,915,327 - -1.0
1,915,388 - B158DRAFT_1816 0.55 -0.1
1,915,388 - B158DRAFT_1816 0.55 -2.1
1,915,397 + B158DRAFT_1816 0.66 -0.8
1,915,405 - B158DRAFT_1816 0.77 +0.1
1,915,405 - B158DRAFT_1816 0.77 -0.2
1,915,408 - B158DRAFT_1816 0.81 -1.1
1,915,453 + +2.4
1,916,829 + B158DRAFT_1818 0.22 +2.3
1,916,829 + B158DRAFT_1818 0.22 -2.0
1,916,837 - B158DRAFT_1818 0.24 -2.8
1,916,837 - B158DRAFT_1818 0.24 +0.0
1,916,837 - B158DRAFT_1818 0.24 +0.7
1,916,837 - B158DRAFT_1818 0.24 -1.5
1,916,864 + B158DRAFT_1818 0.31 -0.1
1,917,015 - B158DRAFT_1818 0.71 -0.2
1,917,093 - +0.1
1,917,128 + +0.9
1,917,152 + +2.0
1,917,160 - -0.4
1,917,160 - -0.3
1,917,166 - -0.1
1,917,166 - +1.2
1,917,205 + +4.7
1,917,205 + -1.5
1,917,220 + -1.7
1,917,220 - -1.4
1,917,220 - -1.5
1,917,220 - -1.9
1,917,220 - +0.8
1,917,261 - +0.3
1,917,303 - B158DRAFT_1819 0.13 -0.4
1,917,355 + B158DRAFT_1819 0.17 -0.1
1,917,418 - B158DRAFT_1819 0.22 -0.5
1,917,430 - B158DRAFT_1819 0.22 +0.0
1,917,488 - B158DRAFT_1819 0.27 -0.4
1,917,528 + B158DRAFT_1819 0.30 -0.8
1,917,528 + B158DRAFT_1819 0.30 -0.3
1,917,529 + B158DRAFT_1819 0.30 +5.0
1,917,537 - B158DRAFT_1819 0.30 +0.7
1,917,691 - B158DRAFT_1819 0.42 -1.3

Or see this region's nucleotide sequence