Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1733

Experiment: m.b. Sisomicin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1732 and B158DRAFT_1733 are separated by 128 nucleotidesB158DRAFT_1733 and B158DRAFT_1734 are separated by 179 nucleotides B158DRAFT_1732: B158DRAFT_1732 - C-terminal peptidase (prc), at 1,807,618 to 1,809,801 _1732 B158DRAFT_1733: B158DRAFT_1733 - hypothetical protein, at 1,809,930 to 1,810,226 _1733 B158DRAFT_1734: B158DRAFT_1734 - Acyl-CoA dehydrogenases, at 1,810,406 to 1,811,584 _1734 Position (kb) 1809 1810 1811Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1808.944 kb on + strand, within B158DRAFT_1732at 1808.947 kb on - strand, within B158DRAFT_1732at 1808.949 kb on + strand, within B158DRAFT_1732at 1808.952 kb on - strand, within B158DRAFT_1732at 1809.024 kb on + strand, within B158DRAFT_1732at 1809.039 kb on + strand, within B158DRAFT_1732at 1809.075 kb on + strand, within B158DRAFT_1732at 1809.075 kb on + strand, within B158DRAFT_1732at 1809.075 kb on + strand, within B158DRAFT_1732at 1809.216 kb on + strand, within B158DRAFT_1732at 1809.237 kb on + strand, within B158DRAFT_1732at 1809.239 kb on - strand, within B158DRAFT_1732at 1809.300 kb on - strand, within B158DRAFT_1732at 1809.375 kb on + strand, within B158DRAFT_1732at 1809.383 kb on - strand, within B158DRAFT_1732at 1809.428 kb on - strand, within B158DRAFT_1732at 1809.463 kb on - strand, within B158DRAFT_1732at 1809.463 kb on - strand, within B158DRAFT_1732at 1809.501 kb on - strand, within B158DRAFT_1732at 1809.587 kb on + strandat 1809.802 kb on + strandat 1809.802 kb on + strandat 1809.847 kb on + strandat 1809.882 kb on + strandat 1809.892 kb on + strandat 1809.892 kb on + strandat 1809.996 kb on - strand, within B158DRAFT_1733at 1810.000 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.054 kb on + strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.062 kb on - strand, within B158DRAFT_1733at 1810.082 kb on - strand, within B158DRAFT_1733at 1810.151 kb on - strand, within B158DRAFT_1733at 1810.180 kb on - strand, within B158DRAFT_1733at 1810.212 kb on + strandat 1810.270 kb on - strandat 1810.307 kb on - strandat 1810.432 kb on + strandat 1810.488 kb on + strandat 1810.677 kb on + strand, within B158DRAFT_1734at 1810.780 kb on + strand, within B158DRAFT_1734at 1810.790 kb on + strand, within B158DRAFT_1734at 1811.109 kb on + strand, within B158DRAFT_1734at 1811.109 kb on + strand, within B158DRAFT_1734at 1811.171 kb on - strand, within B158DRAFT_1734at 1811.173 kb on + strand, within B158DRAFT_1734at 1811.173 kb on + strand, within B158DRAFT_1734

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml
remove
1,808,944 + B158DRAFT_1732 0.61 +0.3
1,808,947 - B158DRAFT_1732 0.61 -0.7
1,808,949 + B158DRAFT_1732 0.61 -0.8
1,808,952 - B158DRAFT_1732 0.61 +3.5
1,809,024 + B158DRAFT_1732 0.64 +1.7
1,809,039 + B158DRAFT_1732 0.65 +1.0
1,809,075 + B158DRAFT_1732 0.67 +1.2
1,809,075 + B158DRAFT_1732 0.67 +1.2
1,809,075 + B158DRAFT_1732 0.67 +1.0
1,809,216 + B158DRAFT_1732 0.73 -0.8
1,809,237 + B158DRAFT_1732 0.74 +1.7
1,809,239 - B158DRAFT_1732 0.74 +2.4
1,809,300 - B158DRAFT_1732 0.77 +1.7
1,809,375 + B158DRAFT_1732 0.80 -1.4
1,809,383 - B158DRAFT_1732 0.81 -0.1
1,809,428 - B158DRAFT_1732 0.83 -2.0
1,809,463 - B158DRAFT_1732 0.84 -0.2
1,809,463 - B158DRAFT_1732 0.84 -0.1
1,809,501 - B158DRAFT_1732 0.86 -0.2
1,809,587 + +0.9
1,809,802 + +1.4
1,809,802 + +0.1
1,809,847 + +0.4
1,809,882 + +0.3
1,809,892 + +2.4
1,809,892 + -0.2
1,809,996 - B158DRAFT_1733 0.22 -0.0
1,810,000 + B158DRAFT_1733 0.24 -0.4
1,810,054 + B158DRAFT_1733 0.42 -1.3
1,810,054 + B158DRAFT_1733 0.42 +0.2
1,810,054 + B158DRAFT_1733 0.42 -1.6
1,810,054 + B158DRAFT_1733 0.42 +1.5
1,810,054 + B158DRAFT_1733 0.42 -1.1
1,810,054 + B158DRAFT_1733 0.42 -0.1
1,810,054 + B158DRAFT_1733 0.42 -0.4
1,810,054 + B158DRAFT_1733 0.42 -1.5
1,810,054 + B158DRAFT_1733 0.42 -0.7
1,810,054 + B158DRAFT_1733 0.42 -2.3
1,810,054 + B158DRAFT_1733 0.42 -1.1
1,810,054 + B158DRAFT_1733 0.42 -0.8
1,810,054 + B158DRAFT_1733 0.42 -3.4
1,810,054 + B158DRAFT_1733 0.42 -3.3
1,810,062 - B158DRAFT_1733 0.44 +1.8
1,810,062 - B158DRAFT_1733 0.44 -2.4
1,810,062 - B158DRAFT_1733 0.44 -2.3
1,810,062 - B158DRAFT_1733 0.44 -0.0
1,810,062 - B158DRAFT_1733 0.44 -1.7
1,810,062 - B158DRAFT_1733 0.44 +4.3
1,810,062 - B158DRAFT_1733 0.44 -0.4
1,810,062 - B158DRAFT_1733 0.44 +0.6
1,810,062 - B158DRAFT_1733 0.44 -0.4
1,810,062 - B158DRAFT_1733 0.44 -0.9
1,810,062 - B158DRAFT_1733 0.44 +1.2
1,810,062 - B158DRAFT_1733 0.44 +2.4
1,810,062 - B158DRAFT_1733 0.44 -0.2
1,810,082 - B158DRAFT_1733 0.51 +0.1
1,810,151 - B158DRAFT_1733 0.74 -0.4
1,810,180 - B158DRAFT_1733 0.84 -2.0
1,810,212 + -0.6
1,810,270 - -1.9
1,810,307 - +0.0
1,810,432 + +2.4
1,810,488 + +0.0
1,810,677 + B158DRAFT_1734 0.23 -1.1
1,810,780 + B158DRAFT_1734 0.32 +0.5
1,810,790 + B158DRAFT_1734 0.33 +2.4
1,811,109 + B158DRAFT_1734 0.60 +0.1
1,811,109 + B158DRAFT_1734 0.60 +0.6
1,811,171 - B158DRAFT_1734 0.65 +0.3
1,811,173 + B158DRAFT_1734 0.65 -0.4
1,811,173 + B158DRAFT_1734 0.65 -1.8

Or see this region's nucleotide sequence