Experiment: m.b. Sisomicin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1591 and B158DRAFT_1592 are separated by 93 nucleotides B158DRAFT_1592 and B158DRAFT_1593 are separated by 69 nucleotides B158DRAFT_1593 and B158DRAFT_1594 are separated by 232 nucleotides B158DRAFT_1594 and B158DRAFT_1595 are separated by 158 nucleotides
B158DRAFT_1591: B158DRAFT_1591 - DNA internalization-related competence protein ComEC/Rec2, at 1,652,115 to 1,654,454
_1591
B158DRAFT_1592: B158DRAFT_1592 - hypothetical protein, at 1,654,548 to 1,655,108
_1592
B158DRAFT_1593: B158DRAFT_1593 - hypothetical protein, at 1,655,178 to 1,655,423
_1593
B158DRAFT_1594: B158DRAFT_1594 - hypothetical protein, at 1,655,656 to 1,655,871
_1594
B158DRAFT_1595: B158DRAFT_1595 - hypothetical protein, at 1,656,030 to 1,656,563
_1595
Position (kb)
1654
1655
1656 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1653.597 kb on - strand, within B158DRAFT_1591 at 1653.597 kb on - strand, within B158DRAFT_1591 at 1653.605 kb on - strand, within B158DRAFT_1591 at 1653.667 kb on + strand, within B158DRAFT_1591 at 1653.667 kb on + strand, within B158DRAFT_1591 at 1653.670 kb on - strand, within B158DRAFT_1591 at 1653.720 kb on + strand, within B158DRAFT_1591 at 1653.725 kb on + strand, within B158DRAFT_1591 at 1653.777 kb on + strand, within B158DRAFT_1591 at 1653.777 kb on + strand, within B158DRAFT_1591 at 1653.777 kb on + strand, within B158DRAFT_1591 at 1653.785 kb on - strand, within B158DRAFT_1591 at 1653.785 kb on - strand, within B158DRAFT_1591 at 1653.785 kb on - strand, within B158DRAFT_1591 at 1653.785 kb on - strand, within B158DRAFT_1591 at 1653.787 kb on + strand, within B158DRAFT_1591 at 1653.792 kb on + strand, within B158DRAFT_1591 at 1653.795 kb on - strand, within B158DRAFT_1591 at 1653.800 kb on - strand, within B158DRAFT_1591 at 1653.827 kb on + strand, within B158DRAFT_1591 at 1653.835 kb on - strand, within B158DRAFT_1591 at 1653.835 kb on - strand, within B158DRAFT_1591 at 1653.835 kb on - strand, within B158DRAFT_1591 at 1653.842 kb on - strand, within B158DRAFT_1591 at 1653.859 kb on + strand, within B158DRAFT_1591 at 1653.879 kb on + strand, within B158DRAFT_1591 at 1653.879 kb on + strand, within B158DRAFT_1591 at 1653.887 kb on - strand, within B158DRAFT_1591 at 1653.887 kb on - strand, within B158DRAFT_1591 at 1653.974 kb on + strand, within B158DRAFT_1591 at 1653.991 kb on + strand, within B158DRAFT_1591 at 1653.998 kb on + strand, within B158DRAFT_1591 at 1653.998 kb on + strand, within B158DRAFT_1591 at 1654.006 kb on - strand, within B158DRAFT_1591 at 1654.006 kb on - strand, within B158DRAFT_1591 at 1654.034 kb on + strand, within B158DRAFT_1591 at 1654.161 kb on - strand, within B158DRAFT_1591 at 1654.203 kb on - strand, within B158DRAFT_1591 at 1654.209 kb on + strand, within B158DRAFT_1591 at 1654.231 kb on - strand at 1654.244 kb on + strand at 1654.278 kb on + strand at 1654.286 kb on - strand at 1654.344 kb on + strand at 1654.358 kb on - strand at 1654.360 kb on + strand at 1654.360 kb on + strand at 1654.365 kb on + strand at 1654.365 kb on + strand at 1654.365 kb on + strand at 1654.368 kb on - strand at 1654.368 kb on - strand at 1654.373 kb on - strand at 1654.373 kb on - strand at 1654.373 kb on - strand at 1654.373 kb on - strand at 1654.373 kb on - strand at 1654.375 kb on + strand at 1654.383 kb on - strand at 1654.411 kb on + strand at 1654.416 kb on + strand at 1654.416 kb on - strand at 1654.419 kb on - strand at 1654.458 kb on + strand at 1654.458 kb on + strand at 1654.458 kb on + strand at 1654.519 kb on + strand at 1654.527 kb on - strand at 1654.539 kb on - strand at 1654.586 kb on - strand at 1654.610 kb on + strand, within B158DRAFT_1592 at 1654.680 kb on + strand, within B158DRAFT_1592 at 1654.680 kb on + strand, within B158DRAFT_1592 at 1654.680 kb on + strand, within B158DRAFT_1592 at 1654.680 kb on + strand, within B158DRAFT_1592 at 1654.688 kb on - strand, within B158DRAFT_1592 at 1654.688 kb on - strand, within B158DRAFT_1592 at 1654.688 kb on - strand, within B158DRAFT_1592 at 1654.688 kb on - strand, within B158DRAFT_1592 at 1654.789 kb on - strand, within B158DRAFT_1592 at 1654.832 kb on - strand, within B158DRAFT_1592 at 1655.008 kb on - strand, within B158DRAFT_1592 at 1655.151 kb on + strand at 1655.159 kb on - strand at 1655.163 kb on + strand at 1655.164 kb on - strand at 1655.168 kb on + strand at 1655.173 kb on + strand at 1655.258 kb on + strand, within B158DRAFT_1593 at 1655.286 kb on + strand, within B158DRAFT_1593 at 1655.333 kb on + strand, within B158DRAFT_1593 at 1655.347 kb on + strand, within B158DRAFT_1593 at 1655.350 kb on - strand, within B158DRAFT_1593 at 1655.355 kb on - strand, within B158DRAFT_1593 at 1655.355 kb on - strand, within B158DRAFT_1593 at 1655.355 kb on - strand, within B158DRAFT_1593 at 1655.378 kb on + strand, within B158DRAFT_1593 at 1655.388 kb on + strand, within B158DRAFT_1593 at 1655.389 kb on + strand, within B158DRAFT_1593 at 1655.389 kb on + strand, within B158DRAFT_1593 at 1655.396 kb on - strand, within B158DRAFT_1593 at 1655.397 kb on - strand, within B158DRAFT_1593 at 1655.477 kb on - strand at 1655.531 kb on + strand at 1655.548 kb on + strand at 1655.556 kb on - strand at 1655.606 kb on + strand at 1655.614 kb on - strand at 1655.762 kb on - strand, within B158DRAFT_1594 at 1655.780 kb on + strand, within B158DRAFT_1594 at 1655.790 kb on + strand, within B158DRAFT_1594 at 1655.803 kb on - strand, within B158DRAFT_1594 at 1655.859 kb on - strand at 1655.859 kb on - strand at 1656.032 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml remove 1,653,597 - B158DRAFT_1591 0.63 -1.3 1,653,597 - B158DRAFT_1591 0.63 -0.0 1,653,605 - B158DRAFT_1591 0.64 -0.4 1,653,667 + B158DRAFT_1591 0.66 -0.3 1,653,667 + B158DRAFT_1591 0.66 -1.0 1,653,670 - B158DRAFT_1591 0.66 -1.0 1,653,720 + B158DRAFT_1591 0.69 +0.4 1,653,725 + B158DRAFT_1591 0.69 -2.3 1,653,777 + B158DRAFT_1591 0.71 -0.1 1,653,777 + B158DRAFT_1591 0.71 -0.2 1,653,777 + B158DRAFT_1591 0.71 +0.7 1,653,785 - B158DRAFT_1591 0.71 +0.8 1,653,785 - B158DRAFT_1591 0.71 -1.2 1,653,785 - B158DRAFT_1591 0.71 -0.5 1,653,785 - B158DRAFT_1591 0.71 +1.0 1,653,787 + B158DRAFT_1591 0.71 +0.4 1,653,792 + B158DRAFT_1591 0.72 -1.3 1,653,795 - B158DRAFT_1591 0.72 +0.1 1,653,800 - B158DRAFT_1591 0.72 -0.5 1,653,827 + B158DRAFT_1591 0.73 +1.6 1,653,835 - B158DRAFT_1591 0.74 -0.6 1,653,835 - B158DRAFT_1591 0.74 -1.3 1,653,835 - B158DRAFT_1591 0.74 -1.8 1,653,842 - B158DRAFT_1591 0.74 -0.1 1,653,859 + B158DRAFT_1591 0.75 +0.1 1,653,879 + B158DRAFT_1591 0.75 -1.7 1,653,879 + B158DRAFT_1591 0.75 +0.7 1,653,887 - B158DRAFT_1591 0.76 -0.9 1,653,887 - B158DRAFT_1591 0.76 -0.4 1,653,974 + B158DRAFT_1591 0.79 -1.1 1,653,991 + B158DRAFT_1591 0.80 -2.1 1,653,998 + B158DRAFT_1591 0.80 -1.6 1,653,998 + B158DRAFT_1591 0.80 -0.6 1,654,006 - B158DRAFT_1591 0.81 +0.1 1,654,006 - B158DRAFT_1591 0.81 -0.3 1,654,034 + B158DRAFT_1591 0.82 +0.4 1,654,161 - B158DRAFT_1591 0.87 -1.8 1,654,203 - B158DRAFT_1591 0.89 -1.8 1,654,209 + B158DRAFT_1591 0.89 -0.0 1,654,231 - -1.2 1,654,244 + -0.4 1,654,278 + +0.4 1,654,286 - +2.7 1,654,344 + +0.3 1,654,358 - -0.9 1,654,360 + +1.1 1,654,360 + -1.0 1,654,365 + -2.4 1,654,365 + +0.1 1,654,365 + +0.6 1,654,368 - -0.4 1,654,368 - +0.1 1,654,373 - +0.2 1,654,373 - -1.0 1,654,373 - +1.4 1,654,373 - -0.9 1,654,373 - -0.1 1,654,375 + -0.5 1,654,383 - +0.6 1,654,411 + -0.8 1,654,416 + +1.3 1,654,416 - -0.6 1,654,419 - -1.6 1,654,458 + +0.0 1,654,458 + -1.6 1,654,458 + -0.0 1,654,519 + -1.0 1,654,527 - -2.8 1,654,539 - +0.3 1,654,586 - -0.2 1,654,610 + B158DRAFT_1592 0.11 -0.3 1,654,680 + B158DRAFT_1592 0.24 +0.1 1,654,680 + B158DRAFT_1592 0.24 -1.7 1,654,680 + B158DRAFT_1592 0.24 -1.2 1,654,680 + B158DRAFT_1592 0.24 -0.6 1,654,688 - B158DRAFT_1592 0.25 -1.3 1,654,688 - B158DRAFT_1592 0.25 -0.4 1,654,688 - B158DRAFT_1592 0.25 +1.0 1,654,688 - B158DRAFT_1592 0.25 -0.4 1,654,789 - B158DRAFT_1592 0.43 -2.3 1,654,832 - B158DRAFT_1592 0.51 -0.1 1,655,008 - B158DRAFT_1592 0.82 -1.1 1,655,151 + -0.6 1,655,159 - -1.2 1,655,163 + -0.9 1,655,164 - -0.7 1,655,168 + -1.3 1,655,173 + -1.7 1,655,258 + B158DRAFT_1593 0.33 +0.1 1,655,286 + B158DRAFT_1593 0.44 -0.7 1,655,333 + B158DRAFT_1593 0.63 -1.4 1,655,347 + B158DRAFT_1593 0.69 +1.8 1,655,350 - B158DRAFT_1593 0.70 -1.4 1,655,355 - B158DRAFT_1593 0.72 -1.3 1,655,355 - B158DRAFT_1593 0.72 -1.4 1,655,355 - B158DRAFT_1593 0.72 +0.4 1,655,378 + B158DRAFT_1593 0.81 -1.7 1,655,388 + B158DRAFT_1593 0.85 -0.2 1,655,389 + B158DRAFT_1593 0.86 -1.5 1,655,389 + B158DRAFT_1593 0.86 -0.6 1,655,396 - B158DRAFT_1593 0.89 +0.0 1,655,397 - B158DRAFT_1593 0.89 -1.1 1,655,477 - +0.1 1,655,531 + -0.1 1,655,548 + +0.3 1,655,556 - -0.5 1,655,606 + -1.1 1,655,614 - +0.9 1,655,762 - B158DRAFT_1594 0.49 -0.3 1,655,780 + B158DRAFT_1594 0.57 -0.8 1,655,790 + B158DRAFT_1594 0.62 -1.7 1,655,803 - B158DRAFT_1594 0.68 +1.7 1,655,859 - +1.4 1,655,859 - +0.3 1,656,032 + -1.3
Or see this region's nucleotide sequence