Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1325

Experiment: m.b. Sisomicin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1323 and B158DRAFT_1324 overlap by 1 nucleotidesB158DRAFT_1324 and B158DRAFT_1325 are separated by 55 nucleotidesB158DRAFT_1325 and B158DRAFT_1326 are separated by 3 nucleotidesB158DRAFT_1326 and B158DRAFT_1327 are separated by 6 nucleotidesB158DRAFT_1327 and B158DRAFT_1328 are separated by 11 nucleotides B158DRAFT_1323: B158DRAFT_1323 - heme ABC exporter, ATP-binding protein CcmA, at 1,366,942 to 1,367,568 _1323 B158DRAFT_1324: B158DRAFT_1324 - heme exporter protein CcmB, at 1,367,568 to 1,368,239 _1324 B158DRAFT_1325: B158DRAFT_1325 - heme exporter protein CcmC, at 1,368,295 to 1,369,068 _1325 B158DRAFT_1326: B158DRAFT_1326 - heme exporter protein CcmD, at 1,369,072 to 1,369,296 _1326 B158DRAFT_1327: B158DRAFT_1327 - Cytochrome c-type biogenesis protein CcmE, at 1,369,303 to 1,369,782 _1327 B158DRAFT_1328: B158DRAFT_1328 - c-type cytochrome biogenesis protein CcmF, at 1,369,794 to 1,371,782 _1328 Position (kb) 1368 1369 1370Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 1367.296 kb on + strand, within B158DRAFT_1323at 1367.296 kb on + strand, within B158DRAFT_1323at 1367.304 kb on - strand, within B158DRAFT_1323at 1367.327 kb on - strand, within B158DRAFT_1323at 1367.369 kb on - strand, within B158DRAFT_1323at 1367.495 kb on + strand, within B158DRAFT_1323at 1367.562 kb on + strandat 1367.582 kb on + strandat 1367.582 kb on + strandat 1367.678 kb on + strand, within B158DRAFT_1324at 1367.683 kb on + strand, within B158DRAFT_1324at 1367.691 kb on - strand, within B158DRAFT_1324at 1367.691 kb on - strand, within B158DRAFT_1324at 1367.736 kb on + strand, within B158DRAFT_1324at 1367.736 kb on + strand, within B158DRAFT_1324at 1367.741 kb on + strand, within B158DRAFT_1324at 1367.741 kb on + strand, within B158DRAFT_1324at 1367.741 kb on + strand, within B158DRAFT_1324at 1367.749 kb on - strand, within B158DRAFT_1324at 1367.810 kb on - strand, within B158DRAFT_1324at 1367.810 kb on - strand, within B158DRAFT_1324at 1367.975 kb on + strand, within B158DRAFT_1324at 1367.983 kb on - strand, within B158DRAFT_1324at 1367.986 kb on + strand, within B158DRAFT_1324at 1367.986 kb on - strand, within B158DRAFT_1324at 1367.986 kb on - strand, within B158DRAFT_1324at 1368.023 kb on - strand, within B158DRAFT_1324at 1368.198 kb on - strandat 1368.414 kb on + strand, within B158DRAFT_1325at 1368.422 kb on - strand, within B158DRAFT_1325at 1368.448 kb on + strand, within B158DRAFT_1325at 1368.639 kb on - strand, within B158DRAFT_1325at 1368.659 kb on - strand, within B158DRAFT_1325at 1368.699 kb on - strand, within B158DRAFT_1325at 1368.765 kb on + strand, within B158DRAFT_1325at 1368.773 kb on - strand, within B158DRAFT_1325at 1368.798 kb on - strand, within B158DRAFT_1325at 1368.798 kb on - strand, within B158DRAFT_1325at 1369.015 kb on + strandat 1369.056 kb on + strandat 1369.248 kb on + strand, within B158DRAFT_1326at 1369.248 kb on + strand, within B158DRAFT_1326at 1369.251 kb on - strand, within B158DRAFT_1326at 1369.359 kb on + strand, within B158DRAFT_1327at 1369.367 kb on - strand, within B158DRAFT_1327at 1369.373 kb on + strand, within B158DRAFT_1327at 1369.410 kb on + strand, within B158DRAFT_1327at 1369.410 kb on + strand, within B158DRAFT_1327at 1369.447 kb on + strand, within B158DRAFT_1327at 1369.490 kb on + strand, within B158DRAFT_1327at 1369.552 kb on - strand, within B158DRAFT_1327

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml
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1,367,296 + B158DRAFT_1323 0.56 +6.0
1,367,296 + B158DRAFT_1323 0.56 +4.2
1,367,304 - B158DRAFT_1323 0.58 +4.9
1,367,327 - B158DRAFT_1323 0.61 +5.2
1,367,369 - B158DRAFT_1323 0.68 +5.3
1,367,495 + B158DRAFT_1323 0.88 +4.9
1,367,562 + -0.2
1,367,582 + +4.4
1,367,582 + +5.5
1,367,678 + B158DRAFT_1324 0.16 +5.8
1,367,683 + B158DRAFT_1324 0.17 +4.7
1,367,691 - B158DRAFT_1324 0.18 +4.5
1,367,691 - B158DRAFT_1324 0.18 +4.4
1,367,736 + B158DRAFT_1324 0.25 +5.0
1,367,736 + B158DRAFT_1324 0.25 +4.9
1,367,741 + B158DRAFT_1324 0.26 +5.0
1,367,741 + B158DRAFT_1324 0.26 +4.6
1,367,741 + B158DRAFT_1324 0.26 +3.6
1,367,749 - B158DRAFT_1324 0.27 +4.3
1,367,810 - B158DRAFT_1324 0.36 +5.1
1,367,810 - B158DRAFT_1324 0.36 +4.9
1,367,975 + B158DRAFT_1324 0.61 +3.4
1,367,983 - B158DRAFT_1324 0.62 +4.6
1,367,986 + B158DRAFT_1324 0.62 +5.1
1,367,986 - B158DRAFT_1324 0.62 +4.2
1,367,986 - B158DRAFT_1324 0.62 +4.6
1,368,023 - B158DRAFT_1324 0.68 +5.0
1,368,198 - +5.4
1,368,414 + B158DRAFT_1325 0.15 +4.6
1,368,422 - B158DRAFT_1325 0.16 +5.4
1,368,448 + B158DRAFT_1325 0.20 +2.7
1,368,639 - B158DRAFT_1325 0.44 +5.1
1,368,659 - B158DRAFT_1325 0.47 +5.1
1,368,699 - B158DRAFT_1325 0.52 +4.7
1,368,765 + B158DRAFT_1325 0.61 +4.5
1,368,773 - B158DRAFT_1325 0.62 +5.2
1,368,798 - B158DRAFT_1325 0.65 +4.7
1,368,798 - B158DRAFT_1325 0.65 +4.0
1,369,015 + +4.3
1,369,056 + +4.3
1,369,248 + B158DRAFT_1326 0.78 +4.2
1,369,248 + B158DRAFT_1326 0.78 +3.3
1,369,251 - B158DRAFT_1326 0.80 +4.6
1,369,359 + B158DRAFT_1327 0.12 +4.8
1,369,367 - B158DRAFT_1327 0.13 +4.9
1,369,373 + B158DRAFT_1327 0.15 +5.2
1,369,410 + B158DRAFT_1327 0.22 +4.4
1,369,410 + B158DRAFT_1327 0.22 +4.3
1,369,447 + B158DRAFT_1327 0.30 +5.3
1,369,490 + B158DRAFT_1327 0.39 +5.2
1,369,552 - B158DRAFT_1327 0.52 +5.1

Or see this region's nucleotide sequence