Experiment: m.b. Sisomicin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0974 and B158DRAFT_0975 are separated by 196 nucleotides B158DRAFT_0975 and B158DRAFT_0976 are separated by 32 nucleotides B158DRAFT_0976 and B158DRAFT_0977 are separated by 40 nucleotides
B158DRAFT_0974: B158DRAFT_0974 - Protein-L-isoaspartate carboxylmethyltransferase, at 1,005,147 to 1,005,815
_0974
B158DRAFT_0975: B158DRAFT_0975 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 1,006,012 to 1,006,623
_0975
B158DRAFT_0976: B158DRAFT_0976 - Uncharacterized protein conserved in bacteria, at 1,006,656 to 1,007,132
_0976
B158DRAFT_0977: B158DRAFT_0977 - Predicted phosphohydrolases, at 1,007,173 to 1,007,997
_0977
Position (kb)
1006
1007
1008 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.683 kb on - strand, within B158DRAFT_0974 at 1005.694 kb on - strand, within B158DRAFT_0974 at 1005.772 kb on - strand at 1005.774 kb on + strand at 1005.841 kb on - strand at 1005.841 kb on - strand at 1005.876 kb on + strand at 1005.876 kb on + strand at 1005.884 kb on - strand at 1005.884 kb on - strand at 1005.903 kb on + strand at 1005.904 kb on - strand at 1005.924 kb on - strand at 1005.972 kb on - strand at 1005.986 kb on + strand at 1005.993 kb on - strand at 1006.004 kb on - strand at 1006.131 kb on - strand, within B158DRAFT_0975 at 1006.133 kb on + strand, within B158DRAFT_0975 at 1006.133 kb on + strand, within B158DRAFT_0975 at 1006.133 kb on + strand, within B158DRAFT_0975 at 1006.133 kb on + strand, within B158DRAFT_0975 at 1006.133 kb on + strand, within B158DRAFT_0975 at 1006.135 kb on + strand, within B158DRAFT_0975 at 1006.135 kb on + strand, within B158DRAFT_0975 at 1006.135 kb on + strand, within B158DRAFT_0975 at 1006.135 kb on + strand, within B158DRAFT_0975 at 1006.135 kb on + strand, within B158DRAFT_0975 at 1006.141 kb on - strand, within B158DRAFT_0975 at 1006.141 kb on - strand, within B158DRAFT_0975 at 1006.141 kb on - strand, within B158DRAFT_0975 at 1006.141 kb on - strand, within B158DRAFT_0975 at 1006.141 kb on - strand, within B158DRAFT_0975 at 1006.143 kb on - strand, within B158DRAFT_0975 at 1006.143 kb on - strand, within B158DRAFT_0975 at 1006.143 kb on - strand, within B158DRAFT_0975 at 1006.199 kb on - strand, within B158DRAFT_0975 at 1006.214 kb on + strand, within B158DRAFT_0975 at 1006.219 kb on + strand, within B158DRAFT_0975 at 1006.227 kb on - strand, within B158DRAFT_0975 at 1006.246 kb on + strand, within B158DRAFT_0975 at 1006.254 kb on - strand, within B158DRAFT_0975 at 1006.254 kb on - strand, within B158DRAFT_0975 at 1006.259 kb on - strand, within B158DRAFT_0975 at 1006.264 kb on - strand, within B158DRAFT_0975 at 1006.287 kb on + strand, within B158DRAFT_0975 at 1006.305 kb on - strand, within B158DRAFT_0975 at 1006.307 kb on + strand, within B158DRAFT_0975 at 1006.335 kb on + strand, within B158DRAFT_0975 at 1006.338 kb on - strand, within B158DRAFT_0975 at 1006.339 kb on - strand, within B158DRAFT_0975 at 1006.379 kb on + strand, within B158DRAFT_0975 at 1006.385 kb on + strand, within B158DRAFT_0975 at 1006.394 kb on - strand, within B158DRAFT_0975 at 1006.400 kb on + strand, within B158DRAFT_0975 at 1006.411 kb on - strand, within B158DRAFT_0975 at 1006.411 kb on - strand, within B158DRAFT_0975 at 1006.428 kb on + strand, within B158DRAFT_0975 at 1006.488 kb on + strand, within B158DRAFT_0975 at 1006.645 kb on + strand at 1006.653 kb on + strand at 1006.653 kb on + strand at 1006.653 kb on - strand at 1006.694 kb on + strand at 1006.694 kb on + strand at 1006.702 kb on - strand at 1006.702 kb on - strand at 1006.739 kb on + strand, within B158DRAFT_0976 at 1006.752 kb on + strand, within B158DRAFT_0976 at 1006.758 kb on + strand, within B158DRAFT_0976 at 1006.814 kb on + strand, within B158DRAFT_0976 at 1006.822 kb on + strand, within B158DRAFT_0976 at 1006.822 kb on - strand, within B158DRAFT_0976 at 1006.858 kb on + strand, within B158DRAFT_0976 at 1006.858 kb on + strand, within B158DRAFT_0976 at 1006.866 kb on - strand, within B158DRAFT_0976 at 1006.866 kb on - strand, within B158DRAFT_0976 at 1006.866 kb on - strand, within B158DRAFT_0976 at 1006.866 kb on - strand, within B158DRAFT_0976 at 1006.877 kb on + strand, within B158DRAFT_0976 at 1006.885 kb on - strand, within B158DRAFT_0976 at 1006.963 kb on + strand, within B158DRAFT_0976 at 1006.963 kb on - strand, within B158DRAFT_0976 at 1006.970 kb on - strand, within B158DRAFT_0976 at 1007.062 kb on + strand, within B158DRAFT_0976 at 1007.090 kb on + strand at 1007.178 kb on - strand at 1007.184 kb on - strand at 1007.231 kb on + strand at 1007.231 kb on + strand at 1007.239 kb on - strand at 1007.270 kb on - strand, within B158DRAFT_0977 at 1007.373 kb on + strand, within B158DRAFT_0977 at 1007.376 kb on + strand, within B158DRAFT_0977 at 1007.378 kb on + strand, within B158DRAFT_0977 at 1007.378 kb on + strand, within B158DRAFT_0977 at 1007.378 kb on + strand, within B158DRAFT_0977 at 1007.378 kb on + strand, within B158DRAFT_0977 at 1007.378 kb on + strand, within B158DRAFT_0977 at 1007.381 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.386 kb on - strand, within B158DRAFT_0977 at 1007.424 kb on - strand, within B158DRAFT_0977 at 1007.462 kb on - strand, within B158DRAFT_0977 at 1007.478 kb on - strand, within B158DRAFT_0977 at 1007.563 kb on - strand, within B158DRAFT_0977 at 1007.567 kb on + strand, within B158DRAFT_0977 at 1007.567 kb on + strand, within B158DRAFT_0977 at 1007.572 kb on + strand, within B158DRAFT_0977 at 1007.604 kb on - strand, within B158DRAFT_0977 at 1007.606 kb on + strand, within B158DRAFT_0977 at 1007.606 kb on + strand, within B158DRAFT_0977 at 1007.606 kb on + strand, within B158DRAFT_0977 at 1007.614 kb on - strand, within B158DRAFT_0977 at 1007.614 kb on - strand, within B158DRAFT_0977 at 1007.614 kb on - strand, within B158DRAFT_0977 at 1007.614 kb on - strand, within B158DRAFT_0977 at 1007.630 kb on + strand, within B158DRAFT_0977 at 1007.754 kb on + strand, within B158DRAFT_0977 at 1007.754 kb on + strand, within B158DRAFT_0977 at 1007.762 kb on - strand, within B158DRAFT_0977 at 1007.762 kb on - strand, within B158DRAFT_0977 at 1007.762 kb on - strand, within B158DRAFT_0977 at 1007.888 kb on + strand, within B158DRAFT_0977 at 1007.896 kb on - strand, within B158DRAFT_0977 at 1007.896 kb on - strand, within B158DRAFT_0977 at 1007.896 kb on - strand, within B158DRAFT_0977 at 1007.915 kb on + strand at 1007.915 kb on + strand at 1007.923 kb on - strand at 1008.017 kb on - strand at 1008.024 kb on + strand at 1008.027 kb on - strand at 1008.029 kb on + strand at 1008.029 kb on + strand at 1008.029 kb on + strand at 1008.029 kb on + strand at 1008.029 kb on + strand at 1008.037 kb on - strand at 1008.037 kb on - strand at 1008.037 kb on - strand at 1008.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml remove 1,005,675 + B158DRAFT_0974 0.79 +1.4 1,005,675 + B158DRAFT_0974 0.79 -2.2 1,005,675 + B158DRAFT_0974 0.79 -2.5 1,005,675 + B158DRAFT_0974 0.79 -0.7 1,005,675 + B158DRAFT_0974 0.79 +1.6 1,005,675 + B158DRAFT_0974 0.79 +2.2 1,005,683 - B158DRAFT_0974 0.80 -1.3 1,005,694 - B158DRAFT_0974 0.82 +0.5 1,005,772 - -0.9 1,005,774 + -0.5 1,005,841 - -1.1 1,005,841 - -0.8 1,005,876 + +1.4 1,005,876 + -0.7 1,005,884 - -1.6 1,005,884 - -0.4 1,005,903 + -1.2 1,005,904 - -2.3 1,005,924 - -0.4 1,005,972 - +0.7 1,005,986 + +0.4 1,005,993 - -0.6 1,006,004 - +2.9 1,006,131 - B158DRAFT_0975 0.19 +0.1 1,006,133 + B158DRAFT_0975 0.20 +0.1 1,006,133 + B158DRAFT_0975 0.20 +0.6 1,006,133 + B158DRAFT_0975 0.20 +0.0 1,006,133 + B158DRAFT_0975 0.20 -1.3 1,006,133 + B158DRAFT_0975 0.20 +0.6 1,006,135 + B158DRAFT_0975 0.20 -1.5 1,006,135 + B158DRAFT_0975 0.20 -3.0 1,006,135 + B158DRAFT_0975 0.20 -0.3 1,006,135 + B158DRAFT_0975 0.20 -0.5 1,006,135 + B158DRAFT_0975 0.20 -0.8 1,006,141 - B158DRAFT_0975 0.21 -1.1 1,006,141 - B158DRAFT_0975 0.21 -0.8 1,006,141 - B158DRAFT_0975 0.21 -0.4 1,006,141 - B158DRAFT_0975 0.21 +0.1 1,006,141 - B158DRAFT_0975 0.21 +0.2 1,006,143 - B158DRAFT_0975 0.21 -2.5 1,006,143 - B158DRAFT_0975 0.21 -0.6 1,006,143 - B158DRAFT_0975 0.21 +0.4 1,006,199 - B158DRAFT_0975 0.31 -0.5 1,006,214 + B158DRAFT_0975 0.33 +2.3 1,006,219 + B158DRAFT_0975 0.34 +0.0 1,006,227 - B158DRAFT_0975 0.35 -0.1 1,006,246 + B158DRAFT_0975 0.38 -0.7 1,006,254 - B158DRAFT_0975 0.40 +0.3 1,006,254 - B158DRAFT_0975 0.40 -0.8 1,006,259 - B158DRAFT_0975 0.40 -1.0 1,006,264 - B158DRAFT_0975 0.41 -0.9 1,006,287 + B158DRAFT_0975 0.45 +1.3 1,006,305 - B158DRAFT_0975 0.48 +0.7 1,006,307 + B158DRAFT_0975 0.48 -1.1 1,006,335 + B158DRAFT_0975 0.53 -0.8 1,006,338 - B158DRAFT_0975 0.53 -0.4 1,006,339 - B158DRAFT_0975 0.53 -1.7 1,006,379 + B158DRAFT_0975 0.60 -0.1 1,006,385 + B158DRAFT_0975 0.61 +3.0 1,006,394 - B158DRAFT_0975 0.62 -0.1 1,006,400 + B158DRAFT_0975 0.63 -0.4 1,006,411 - B158DRAFT_0975 0.65 -0.5 1,006,411 - B158DRAFT_0975 0.65 -0.1 1,006,428 + B158DRAFT_0975 0.68 -1.0 1,006,488 + B158DRAFT_0975 0.78 -0.7 1,006,645 + +0.6 1,006,653 + -3.2 1,006,653 + -1.7 1,006,653 - +1.3 1,006,694 + -1.5 1,006,694 + -0.4 1,006,702 - -1.4 1,006,702 - -0.1 1,006,739 + B158DRAFT_0976 0.17 -0.6 1,006,752 + B158DRAFT_0976 0.20 +0.5 1,006,758 + B158DRAFT_0976 0.21 +1.8 1,006,814 + B158DRAFT_0976 0.33 +4.0 1,006,822 + B158DRAFT_0976 0.35 +6.4 1,006,822 - B158DRAFT_0976 0.35 +0.7 1,006,858 + B158DRAFT_0976 0.42 -1.1 1,006,858 + B158DRAFT_0976 0.42 +0.6 1,006,866 - B158DRAFT_0976 0.44 -1.4 1,006,866 - B158DRAFT_0976 0.44 +3.4 1,006,866 - B158DRAFT_0976 0.44 +0.8 1,006,866 - B158DRAFT_0976 0.44 -1.7 1,006,877 + B158DRAFT_0976 0.46 +0.7 1,006,885 - B158DRAFT_0976 0.48 -0.3 1,006,963 + B158DRAFT_0976 0.64 -0.3 1,006,963 - B158DRAFT_0976 0.64 -0.3 1,006,970 - B158DRAFT_0976 0.66 -1.0 1,007,062 + B158DRAFT_0976 0.85 -0.4 1,007,090 + -0.9 1,007,178 - +1.0 1,007,184 - -0.6 1,007,231 + -0.7 1,007,231 + -0.1 1,007,239 - -1.9 1,007,270 - B158DRAFT_0977 0.12 -0.1 1,007,373 + B158DRAFT_0977 0.24 -2.0 1,007,376 + B158DRAFT_0977 0.25 +1.0 1,007,378 + B158DRAFT_0977 0.25 -0.9 1,007,378 + B158DRAFT_0977 0.25 +0.3 1,007,378 + B158DRAFT_0977 0.25 -0.6 1,007,378 + B158DRAFT_0977 0.25 +0.0 1,007,378 + B158DRAFT_0977 0.25 -1.6 1,007,381 - B158DRAFT_0977 0.25 -1.3 1,007,386 - B158DRAFT_0977 0.26 -0.1 1,007,386 - B158DRAFT_0977 0.26 -1.4 1,007,386 - B158DRAFT_0977 0.26 -0.2 1,007,386 - B158DRAFT_0977 0.26 -2.4 1,007,386 - B158DRAFT_0977 0.26 -1.2 1,007,386 - B158DRAFT_0977 0.26 +0.4 1,007,386 - B158DRAFT_0977 0.26 -1.0 1,007,386 - B158DRAFT_0977 0.26 -0.5 1,007,386 - B158DRAFT_0977 0.26 -0.1 1,007,386 - B158DRAFT_0977 0.26 -2.2 1,007,386 - B158DRAFT_0977 0.26 -3.1 1,007,424 - B158DRAFT_0977 0.30 +0.7 1,007,462 - B158DRAFT_0977 0.35 -1.3 1,007,478 - B158DRAFT_0977 0.37 -0.8 1,007,563 - B158DRAFT_0977 0.47 -1.1 1,007,567 + B158DRAFT_0977 0.48 -1.4 1,007,567 + B158DRAFT_0977 0.48 +0.3 1,007,572 + B158DRAFT_0977 0.48 +0.7 1,007,604 - B158DRAFT_0977 0.52 -1.0 1,007,606 + B158DRAFT_0977 0.52 -0.9 1,007,606 + B158DRAFT_0977 0.52 -2.4 1,007,606 + B158DRAFT_0977 0.52 -0.1 1,007,614 - B158DRAFT_0977 0.53 +0.6 1,007,614 - B158DRAFT_0977 0.53 +4.2 1,007,614 - B158DRAFT_0977 0.53 -0.8 1,007,614 - B158DRAFT_0977 0.53 -1.1 1,007,630 + B158DRAFT_0977 0.55 -0.0 1,007,754 + B158DRAFT_0977 0.70 -1.4 1,007,754 + B158DRAFT_0977 0.70 +3.9 1,007,762 - B158DRAFT_0977 0.71 -2.8 1,007,762 - B158DRAFT_0977 0.71 -0.4 1,007,762 - B158DRAFT_0977 0.71 -0.9 1,007,888 + B158DRAFT_0977 0.87 -1.4 1,007,896 - B158DRAFT_0977 0.88 -0.2 1,007,896 - B158DRAFT_0977 0.88 -1.0 1,007,896 - B158DRAFT_0977 0.88 -0.6 1,007,915 + -1.4 1,007,915 + +0.2 1,007,923 - -1.3 1,008,017 - -0.8 1,008,024 + -0.5 1,008,027 - -0.6 1,008,029 + -1.0 1,008,029 + +0.5 1,008,029 + +1.3 1,008,029 + -0.0 1,008,029 + -0.0 1,008,037 - +0.4 1,008,037 - -0.0 1,008,037 - +0.5 1,008,037 - +1.3
Or see this region's nucleotide sequence