Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0055

Experiment: m.b. Sisomicin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0054 and B158DRAFT_0055 are separated by 10 nucleotidesB158DRAFT_0055 and B158DRAFT_0056 are separated by 213 nucleotidesB158DRAFT_0056 and B158DRAFT_0057 are separated by 59 nucleotides B158DRAFT_0054: B158DRAFT_0054 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 50,463 to 53,075 _0054 B158DRAFT_0055: B158DRAFT_0055 - sugar fermentation stimulation protein, at 53,086 to 53,811 _0055 B158DRAFT_0056: B158DRAFT_0056 - transcriptional regulator, TraR/DksA family, at 54,025 to 54,471 _0056 B158DRAFT_0057: B158DRAFT_0057 - glutamyl-queuosine tRNA(Asp) synthetase, at 54,531 to 55,406 _0057 Position (kb) 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 52.089 kb on + strand, within B158DRAFT_0054at 52.112 kb on + strand, within B158DRAFT_0054at 52.130 kb on + strand, within B158DRAFT_0054at 52.177 kb on + strand, within B158DRAFT_0054at 52.191 kb on + strand, within B158DRAFT_0054at 52.218 kb on - strand, within B158DRAFT_0054at 52.244 kb on + strand, within B158DRAFT_0054at 52.251 kb on + strand, within B158DRAFT_0054at 52.259 kb on - strand, within B158DRAFT_0054at 52.277 kb on - strand, within B158DRAFT_0054at 52.283 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.290 kb on + strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.301 kb on - strand, within B158DRAFT_0054at 52.338 kb on + strand, within B158DRAFT_0054at 52.391 kb on - strand, within B158DRAFT_0054at 52.422 kb on + strand, within B158DRAFT_0054at 52.472 kb on + strand, within B158DRAFT_0054at 52.472 kb on + strand, within B158DRAFT_0054at 52.500 kb on - strand, within B158DRAFT_0054at 52.529 kb on + strand, within B158DRAFT_0054at 52.546 kb on + strand, within B158DRAFT_0054at 52.564 kb on - strand, within B158DRAFT_0054at 52.660 kb on + strand, within B158DRAFT_0054at 52.668 kb on - strand, within B158DRAFT_0054at 52.668 kb on - strand, within B158DRAFT_0054at 52.671 kb on + strand, within B158DRAFT_0054at 52.671 kb on + strand, within B158DRAFT_0054at 52.691 kb on - strand, within B158DRAFT_0054at 52.701 kb on + strand, within B158DRAFT_0054at 52.724 kb on + strand, within B158DRAFT_0054at 52.732 kb on - strand, within B158DRAFT_0054at 52.835 kb on + strandat 52.886 kb on - strandat 52.890 kb on + strandat 52.972 kb on + strandat 52.972 kb on + strandat 52.996 kb on - strandat 53.017 kb on - strandat 53.048 kb on + strandat 53.139 kb on + strandat 53.198 kb on - strand, within B158DRAFT_0055at 53.234 kb on - strand, within B158DRAFT_0055at 53.340 kb on - strand, within B158DRAFT_0055at 53.373 kb on - strand, within B158DRAFT_0055at 53.385 kb on + strand, within B158DRAFT_0055at 53.385 kb on + strand, within B158DRAFT_0055at 53.385 kb on + strand, within B158DRAFT_0055at 53.393 kb on - strand, within B158DRAFT_0055at 53.486 kb on - strand, within B158DRAFT_0055at 53.514 kb on - strand, within B158DRAFT_0055at 53.526 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.621 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.653 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.661 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.669 kb on + strand, within B158DRAFT_0055at 53.672 kb on - strand, within B158DRAFT_0055at 53.752 kb on + strandat 53.914 kb on + strandat 54.198 kb on - strand, within B158DRAFT_0056at 54.221 kb on + strand, within B158DRAFT_0056at 54.343 kb on + strand, within B158DRAFT_0056at 54.459 kb on + strandat 54.482 kb on - strandat 54.487 kb on - strandat 54.491 kb on + strandat 54.494 kb on - strandat 54.494 kb on - strandat 54.519 kb on - strandat 54.591 kb on + strandat 54.594 kb on + strandat 54.717 kb on + strand, within B158DRAFT_0057at 54.725 kb on - strand, within B158DRAFT_0057at 54.733 kb on + strand, within B158DRAFT_0057at 54.741 kb on - strand, within B158DRAFT_0057at 54.759 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.769 kb on + strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057at 54.777 kb on - strand, within B158DRAFT_0057

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml
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52,089 + B158DRAFT_0054 0.62 -0.3
52,112 + B158DRAFT_0054 0.63 -0.2
52,130 + B158DRAFT_0054 0.64 +2.8
52,177 + B158DRAFT_0054 0.66 -0.1
52,191 + B158DRAFT_0054 0.66 +2.0
52,218 - B158DRAFT_0054 0.67 +0.3
52,244 + B158DRAFT_0054 0.68 -1.2
52,251 + B158DRAFT_0054 0.68 -0.7
52,259 - B158DRAFT_0054 0.69 -0.3
52,277 - B158DRAFT_0054 0.69 -1.8
52,283 + B158DRAFT_0054 0.70 -0.3
52,288 + B158DRAFT_0054 0.70 +1.5
52,288 + B158DRAFT_0054 0.70 +0.3
52,288 + B158DRAFT_0054 0.70 -0.2
52,288 + B158DRAFT_0054 0.70 +0.3
52,288 + B158DRAFT_0054 0.70 -0.6
52,288 + B158DRAFT_0054 0.70 -0.2
52,288 + B158DRAFT_0054 0.70 +0.4
52,288 + B158DRAFT_0054 0.70 +0.7
52,290 + B158DRAFT_0054 0.70 -0.4
52,296 - B158DRAFT_0054 0.70 +2.3
52,296 - B158DRAFT_0054 0.70 +4.6
52,296 - B158DRAFT_0054 0.70 +0.6
52,296 - B158DRAFT_0054 0.70 -1.0
52,296 - B158DRAFT_0054 0.70 -0.8
52,296 - B158DRAFT_0054 0.70 -0.3
52,296 - B158DRAFT_0054 0.70 +0.6
52,301 - B158DRAFT_0054 0.70 +0.1
52,338 + B158DRAFT_0054 0.72 -1.7
52,391 - B158DRAFT_0054 0.74 -0.9
52,422 + B158DRAFT_0054 0.75 -0.9
52,472 + B158DRAFT_0054 0.77 -3.7
52,472 + B158DRAFT_0054 0.77 -1.7
52,500 - B158DRAFT_0054 0.78 -0.6
52,529 + B158DRAFT_0054 0.79 -1.3
52,546 + B158DRAFT_0054 0.80 -0.2
52,564 - B158DRAFT_0054 0.80 -0.6
52,660 + B158DRAFT_0054 0.84 -1.7
52,668 - B158DRAFT_0054 0.84 -0.3
52,668 - B158DRAFT_0054 0.84 -2.4
52,671 + B158DRAFT_0054 0.85 -0.7
52,671 + B158DRAFT_0054 0.85 -2.2
52,691 - B158DRAFT_0054 0.85 -0.7
52,701 + B158DRAFT_0054 0.86 -1.3
52,724 + B158DRAFT_0054 0.87 -1.3
52,732 - B158DRAFT_0054 0.87 -0.8
52,835 + -0.4
52,886 - -0.1
52,890 + -1.5
52,972 + -0.7
52,972 + -1.7
52,996 - -0.3
53,017 - +0.8
53,048 + -0.1
53,139 + -0.8
53,198 - B158DRAFT_0055 0.15 -0.2
53,234 - B158DRAFT_0055 0.20 -0.5
53,340 - B158DRAFT_0055 0.35 -0.3
53,373 - B158DRAFT_0055 0.40 -0.7
53,385 + B158DRAFT_0055 0.41 -0.2
53,385 + B158DRAFT_0055 0.41 -2.0
53,385 + B158DRAFT_0055 0.41 +1.1
53,393 - B158DRAFT_0055 0.42 -1.8
53,486 - B158DRAFT_0055 0.55 -1.4
53,514 - B158DRAFT_0055 0.59 -1.0
53,526 + B158DRAFT_0055 0.61 -0.2
53,613 + B158DRAFT_0055 0.73 -1.6
53,613 + B158DRAFT_0055 0.73 -1.9
53,613 + B158DRAFT_0055 0.73 -1.4
53,613 + B158DRAFT_0055 0.73 -0.1
53,613 + B158DRAFT_0055 0.73 +0.4
53,613 + B158DRAFT_0055 0.73 +1.7
53,621 - B158DRAFT_0055 0.74 -0.2
53,634 - B158DRAFT_0055 0.75 -1.0
53,634 - B158DRAFT_0055 0.75 -1.6
53,634 - B158DRAFT_0055 0.75 -0.1
53,634 - B158DRAFT_0055 0.75 -1.2
53,634 - B158DRAFT_0055 0.75 -1.1
53,653 + B158DRAFT_0055 0.78 +0.5
53,655 + B158DRAFT_0055 0.78 +0.7
53,655 + B158DRAFT_0055 0.78 -0.2
53,655 + B158DRAFT_0055 0.78 -0.4
53,655 + B158DRAFT_0055 0.78 -0.3
53,655 + B158DRAFT_0055 0.78 +0.7
53,655 + B158DRAFT_0055 0.78 -0.9
53,655 + B158DRAFT_0055 0.78 -1.8
53,655 + B158DRAFT_0055 0.78 -1.1
53,661 - B158DRAFT_0055 0.79 +1.1
53,663 - B158DRAFT_0055 0.79 -1.8
53,663 - B158DRAFT_0055 0.79 +5.7
53,663 - B158DRAFT_0055 0.79 -0.8
53,663 - B158DRAFT_0055 0.79 +0.5
53,663 - B158DRAFT_0055 0.79 +1.0
53,663 - B158DRAFT_0055 0.79 +0.3
53,663 - B158DRAFT_0055 0.79 -1.2
53,669 + B158DRAFT_0055 0.80 -0.2
53,672 - B158DRAFT_0055 0.81 -0.4
53,752 + -0.1
53,914 + +0.3
54,198 - B158DRAFT_0056 0.39 -1.6
54,221 + B158DRAFT_0056 0.44 +1.2
54,343 + B158DRAFT_0056 0.71 -0.8
54,459 + +0.2
54,482 - +0.1
54,487 - -1.1
54,491 + +0.3
54,494 - -1.9
54,494 - -0.7
54,519 - +1.5
54,591 + -2.1
54,594 + +1.8
54,717 + B158DRAFT_0057 0.21 -1.0
54,725 - B158DRAFT_0057 0.22 -0.5
54,733 + B158DRAFT_0057 0.23 -1.2
54,741 - B158DRAFT_0057 0.24 -1.3
54,759 + B158DRAFT_0057 0.26 -1.4
54,769 + B158DRAFT_0057 0.27 +0.5
54,769 + B158DRAFT_0057 0.27 -0.6
54,769 + B158DRAFT_0057 0.27 +0.5
54,769 + B158DRAFT_0057 0.27 -1.8
54,777 - B158DRAFT_0057 0.28 -0.6
54,777 - B158DRAFT_0057 0.28 +0.8
54,777 - B158DRAFT_0057 0.28 -2.7
54,777 - B158DRAFT_0057 0.28 +0.1

Or see this region's nucleotide sequence