Experiment: m.b. Sisomicin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0050 and B158DRAFT_0051 are separated by 47 nucleotides B158DRAFT_0051 and B158DRAFT_0052 are separated by 42 nucleotides B158DRAFT_0052 and B158DRAFT_0053 are separated by 102 nucleotides B158DRAFT_0053 and B158DRAFT_0054 are separated by 229 nucleotides
B158DRAFT_0050: B158DRAFT_0050 - hypothetical protein, at 47,775 to 48,371
_0050
B158DRAFT_0051: B158DRAFT_0051 - hypothetical protein, at 48,419 to 48,952
_0051
B158DRAFT_0052: B158DRAFT_0052 - hypothetical protein, at 48,995 to 49,813
_0052
B158DRAFT_0053: B158DRAFT_0053 - Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases, at 49,916 to 50,233
_0053
B158DRAFT_0054: B158DRAFT_0054 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 50,463 to 53,075
_0054
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 48.082 kb on + strand, within B158DRAFT_0050 at 48.082 kb on + strand, within B158DRAFT_0050 at 48.090 kb on - strand, within B158DRAFT_0050 at 48.090 kb on - strand, within B158DRAFT_0050 at 48.203 kb on + strand, within B158DRAFT_0050 at 48.203 kb on + strand, within B158DRAFT_0050 at 48.203 kb on + strand, within B158DRAFT_0050 at 48.203 kb on + strand, within B158DRAFT_0050 at 48.203 kb on + strand, within B158DRAFT_0050 at 48.205 kb on + strand, within B158DRAFT_0050 at 48.211 kb on - strand, within B158DRAFT_0050 at 48.211 kb on - strand, within B158DRAFT_0050 at 48.211 kb on - strand, within B158DRAFT_0050 at 48.223 kb on - strand, within B158DRAFT_0050 at 48.254 kb on + strand, within B158DRAFT_0050 at 48.299 kb on - strand, within B158DRAFT_0050 at 48.302 kb on + strand, within B158DRAFT_0050 at 48.302 kb on + strand, within B158DRAFT_0050 at 48.315 kb on + strand at 48.315 kb on + strand at 48.315 kb on + strand at 48.316 kb on + strand at 48.323 kb on - strand at 48.344 kb on + strand at 48.344 kb on + strand at 48.493 kb on + strand, within B158DRAFT_0051 at 48.595 kb on + strand, within B158DRAFT_0051 at 48.603 kb on - strand, within B158DRAFT_0051 at 48.603 kb on - strand, within B158DRAFT_0051 at 48.603 kb on - strand, within B158DRAFT_0051 at 48.608 kb on - strand, within B158DRAFT_0051 at 48.682 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.785 kb on + strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.793 kb on - strand, within B158DRAFT_0051 at 48.829 kb on + strand, within B158DRAFT_0051 at 48.862 kb on - strand, within B158DRAFT_0051 at 48.931 kb on + strand at 48.931 kb on + strand at 49.057 kb on + strand at 49.065 kb on - strand at 49.070 kb on - strand at 49.082 kb on + strand, within B158DRAFT_0052 at 49.082 kb on + strand, within B158DRAFT_0052 at 49.088 kb on - strand, within B158DRAFT_0052 at 49.090 kb on + strand, within B158DRAFT_0052 at 49.090 kb on - strand, within B158DRAFT_0052 at 49.090 kb on - strand, within B158DRAFT_0052 at 49.090 kb on - strand, within B158DRAFT_0052 at 49.090 kb on - strand, within B158DRAFT_0052 at 49.090 kb on - strand, within B158DRAFT_0052 at 49.289 kb on + strand, within B158DRAFT_0052 at 49.289 kb on + strand, within B158DRAFT_0052 at 49.289 kb on + strand, within B158DRAFT_0052 at 49.294 kb on + strand, within B158DRAFT_0052 at 49.302 kb on - strand, within B158DRAFT_0052 at 49.308 kb on + strand, within B158DRAFT_0052 at 49.328 kb on + strand, within B158DRAFT_0052 at 49.328 kb on + strand, within B158DRAFT_0052 at 49.328 kb on + strand, within B158DRAFT_0052 at 49.328 kb on + strand, within B158DRAFT_0052 at 49.336 kb on - strand, within B158DRAFT_0052 at 49.336 kb on - strand, within B158DRAFT_0052 at 49.336 kb on - strand, within B158DRAFT_0052 at 49.336 kb on - strand, within B158DRAFT_0052 at 49.336 kb on - strand, within B158DRAFT_0052 at 49.341 kb on + strand, within B158DRAFT_0052 at 49.361 kb on + strand, within B158DRAFT_0052 at 49.364 kb on - strand, within B158DRAFT_0052 at 49.417 kb on - strand, within B158DRAFT_0052 at 49.428 kb on - strand, within B158DRAFT_0052 at 49.428 kb on - strand, within B158DRAFT_0052 at 49.498 kb on + strand, within B158DRAFT_0052 at 49.508 kb on - strand, within B158DRAFT_0052 at 49.562 kb on + strand, within B158DRAFT_0052 at 49.584 kb on + strand, within B158DRAFT_0052 at 49.736 kb on - strand at 49.738 kb on + strand at 49.799 kb on + strand at 49.807 kb on - strand at 49.906 kb on - strand at 49.957 kb on + strand, within B158DRAFT_0053 at 49.957 kb on + strand, within B158DRAFT_0053 at 49.957 kb on + strand, within B158DRAFT_0053 at 49.957 kb on + strand, within B158DRAFT_0053 at 49.964 kb on + strand, within B158DRAFT_0053 at 49.965 kb on - strand, within B158DRAFT_0053 at 49.965 kb on - strand, within B158DRAFT_0053 at 49.965 kb on - strand, within B158DRAFT_0053 at 49.965 kb on - strand, within B158DRAFT_0053 at 49.972 kb on - strand, within B158DRAFT_0053 at 49.979 kb on + strand, within B158DRAFT_0053 at 50.054 kb on + strand, within B158DRAFT_0053 at 50.077 kb on + strand, within B158DRAFT_0053 at 50.077 kb on + strand, within B158DRAFT_0053 at 50.077 kb on + strand, within B158DRAFT_0053 at 50.077 kb on + strand, within B158DRAFT_0053 at 50.077 kb on + strand, within B158DRAFT_0053 at 50.085 kb on - strand, within B158DRAFT_0053 at 50.085 kb on - strand, within B158DRAFT_0053 at 50.085 kb on - strand, within B158DRAFT_0053 at 50.099 kb on + strand, within B158DRAFT_0053 at 50.117 kb on - strand, within B158DRAFT_0053 at 50.117 kb on - strand, within B158DRAFT_0053 at 50.243 kb on - strand at 50.269 kb on + strand at 50.277 kb on + strand at 50.278 kb on + strand at 50.286 kb on - strand at 50.401 kb on + strand at 50.409 kb on + strand at 50.417 kb on - strand at 50.504 kb on + strand at 50.517 kb on + strand at 50.592 kb on + strand at 50.600 kb on - strand at 50.646 kb on + strand at 50.653 kb on + strand at 50.656 kb on + strand at 50.656 kb on + strand at 50.664 kb on - strand at 50.723 kb on - strand at 50.759 kb on + strand, within B158DRAFT_0054 at 50.800 kb on - strand, within B158DRAFT_0054
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.025 mg/ml remove 48,082 + B158DRAFT_0050 0.51 -2.5 48,082 + B158DRAFT_0050 0.51 +1.3 48,090 - B158DRAFT_0050 0.53 -0.4 48,090 - B158DRAFT_0050 0.53 +0.7 48,203 + B158DRAFT_0050 0.72 -1.8 48,203 + B158DRAFT_0050 0.72 -0.9 48,203 + B158DRAFT_0050 0.72 +0.3 48,203 + B158DRAFT_0050 0.72 -1.0 48,203 + B158DRAFT_0050 0.72 -0.3 48,205 + B158DRAFT_0050 0.72 -0.6 48,211 - B158DRAFT_0050 0.73 -0.7 48,211 - B158DRAFT_0050 0.73 +0.9 48,211 - B158DRAFT_0050 0.73 +0.1 48,223 - B158DRAFT_0050 0.75 -1.8 48,254 + B158DRAFT_0050 0.80 +0.9 48,299 - B158DRAFT_0050 0.88 +1.5 48,302 + B158DRAFT_0050 0.88 -1.3 48,302 + B158DRAFT_0050 0.88 +1.5 48,315 + -1.9 48,315 + -1.4 48,315 + -0.8 48,316 + +0.3 48,323 - +0.0 48,344 + -0.5 48,344 + +0.1 48,493 + B158DRAFT_0051 0.14 -0.3 48,595 + B158DRAFT_0051 0.33 -2.0 48,603 - B158DRAFT_0051 0.34 -0.0 48,603 - B158DRAFT_0051 0.34 -0.6 48,603 - B158DRAFT_0051 0.34 +0.5 48,608 - B158DRAFT_0051 0.35 +0.1 48,682 + B158DRAFT_0051 0.49 -0.1 48,785 + B158DRAFT_0051 0.69 -0.2 48,785 + B158DRAFT_0051 0.69 +0.3 48,785 + B158DRAFT_0051 0.69 -0.5 48,785 + B158DRAFT_0051 0.69 -1.9 48,785 + B158DRAFT_0051 0.69 -1.2 48,785 + B158DRAFT_0051 0.69 -0.8 48,785 + B158DRAFT_0051 0.69 -2.6 48,785 + B158DRAFT_0051 0.69 +0.3 48,785 + B158DRAFT_0051 0.69 -0.5 48,785 + B158DRAFT_0051 0.69 -1.0 48,785 + B158DRAFT_0051 0.69 -0.2 48,785 + B158DRAFT_0051 0.69 -0.9 48,785 + B158DRAFT_0051 0.69 -1.1 48,785 + B158DRAFT_0051 0.69 +0.1 48,785 + B158DRAFT_0051 0.69 +1.3 48,785 + B158DRAFT_0051 0.69 -0.2 48,785 + B158DRAFT_0051 0.69 -0.3 48,785 + B158DRAFT_0051 0.69 -0.2 48,785 + B158DRAFT_0051 0.69 -2.5 48,793 - B158DRAFT_0051 0.70 -0.2 48,793 - B158DRAFT_0051 0.70 -1.5 48,793 - B158DRAFT_0051 0.70 -0.3 48,793 - B158DRAFT_0051 0.70 -0.4 48,793 - B158DRAFT_0051 0.70 -2.0 48,793 - B158DRAFT_0051 0.70 -2.9 48,793 - B158DRAFT_0051 0.70 +1.3 48,793 - B158DRAFT_0051 0.70 -1.8 48,793 - B158DRAFT_0051 0.70 -0.6 48,793 - B158DRAFT_0051 0.70 -1.1 48,793 - B158DRAFT_0051 0.70 -1.3 48,793 - B158DRAFT_0051 0.70 -0.3 48,793 - B158DRAFT_0051 0.70 -1.4 48,793 - B158DRAFT_0051 0.70 +1.3 48,793 - B158DRAFT_0051 0.70 -1.3 48,793 - B158DRAFT_0051 0.70 -2.0 48,793 - B158DRAFT_0051 0.70 -1.0 48,793 - B158DRAFT_0051 0.70 +1.5 48,793 - B158DRAFT_0051 0.70 -1.3 48,793 - B158DRAFT_0051 0.70 +1.1 48,829 + B158DRAFT_0051 0.77 -0.7 48,862 - B158DRAFT_0051 0.83 +0.7 48,931 + +4.9 48,931 + -1.4 49,057 + -0.5 49,065 - -0.6 49,070 - -0.8 49,082 + B158DRAFT_0052 0.11 +0.3 49,082 + B158DRAFT_0052 0.11 +0.6 49,088 - B158DRAFT_0052 0.11 +0.4 49,090 + B158DRAFT_0052 0.12 -0.4 49,090 - B158DRAFT_0052 0.12 -0.6 49,090 - B158DRAFT_0052 0.12 -1.2 49,090 - B158DRAFT_0052 0.12 +2.0 49,090 - B158DRAFT_0052 0.12 +0.4 49,090 - B158DRAFT_0052 0.12 +1.1 49,289 + B158DRAFT_0052 0.36 -0.4 49,289 + B158DRAFT_0052 0.36 +3.6 49,289 + B158DRAFT_0052 0.36 +1.2 49,294 + B158DRAFT_0052 0.37 -1.9 49,302 - B158DRAFT_0052 0.37 -0.9 49,308 + B158DRAFT_0052 0.38 -1.4 49,328 + B158DRAFT_0052 0.41 +0.7 49,328 + B158DRAFT_0052 0.41 -0.8 49,328 + B158DRAFT_0052 0.41 +0.1 49,328 + B158DRAFT_0052 0.41 -1.1 49,336 - B158DRAFT_0052 0.42 +1.2 49,336 - B158DRAFT_0052 0.42 -0.2 49,336 - B158DRAFT_0052 0.42 +0.0 49,336 - B158DRAFT_0052 0.42 -0.7 49,336 - B158DRAFT_0052 0.42 -2.2 49,341 + B158DRAFT_0052 0.42 -0.2 49,361 + B158DRAFT_0052 0.45 -1.6 49,364 - B158DRAFT_0052 0.45 +1.1 49,417 - B158DRAFT_0052 0.52 -0.1 49,428 - B158DRAFT_0052 0.53 -1.0 49,428 - B158DRAFT_0052 0.53 -1.1 49,498 + B158DRAFT_0052 0.61 -0.3 49,508 - B158DRAFT_0052 0.63 -0.8 49,562 + B158DRAFT_0052 0.69 +0.3 49,584 + B158DRAFT_0052 0.72 +1.1 49,736 - -0.3 49,738 + -1.6 49,799 + -1.9 49,807 - -0.5 49,906 - -1.6 49,957 + B158DRAFT_0053 0.13 +0.7 49,957 + B158DRAFT_0053 0.13 +2.5 49,957 + B158DRAFT_0053 0.13 -0.7 49,957 + B158DRAFT_0053 0.13 -1.4 49,964 + B158DRAFT_0053 0.15 -1.0 49,965 - B158DRAFT_0053 0.15 -1.0 49,965 - B158DRAFT_0053 0.15 -2.3 49,965 - B158DRAFT_0053 0.15 -1.4 49,965 - B158DRAFT_0053 0.15 -0.2 49,972 - B158DRAFT_0053 0.18 -1.9 49,979 + B158DRAFT_0053 0.20 +0.3 50,054 + B158DRAFT_0053 0.43 +0.0 50,077 + B158DRAFT_0053 0.51 -0.5 50,077 + B158DRAFT_0053 0.51 +0.7 50,077 + B158DRAFT_0053 0.51 +0.0 50,077 + B158DRAFT_0053 0.51 -0.3 50,077 + B158DRAFT_0053 0.51 -0.0 50,085 - B158DRAFT_0053 0.53 +0.5 50,085 - B158DRAFT_0053 0.53 -0.0 50,085 - B158DRAFT_0053 0.53 -0.2 50,099 + B158DRAFT_0053 0.58 +1.1 50,117 - B158DRAFT_0053 0.63 -0.9 50,117 - B158DRAFT_0053 0.63 -0.7 50,243 - -2.1 50,269 + -0.4 50,277 + +1.0 50,278 + +0.5 50,286 - +0.8 50,401 + -0.8 50,409 + -2.0 50,417 - +2.1 50,504 + -0.6 50,517 + +0.5 50,592 + -0.3 50,600 - +0.0 50,646 + -1.0 50,653 + +0.6 50,656 + -0.0 50,656 + -0.6 50,664 - +1.2 50,723 - +0.6 50,759 + B158DRAFT_0054 0.11 -1.3 50,800 - B158DRAFT_0054 0.13 +2.5
Or see this region's nucleotide sequence