Experiment: m.b. nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2415 and B158DRAFT_2416 overlap by 1 nucleotides B158DRAFT_2416 and B158DRAFT_2417 are separated by 2 nucleotides B158DRAFT_2417 and B158DRAFT_2418 are separated by 171 nucleotides B158DRAFT_2418 and B158DRAFT_2419 overlap by 4 nucleotides
B158DRAFT_2415: B158DRAFT_2415 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 585,894 to 588,968
_2415
B158DRAFT_2416: B158DRAFT_2416 - prepilin-type N-terminal cleavage/methylation domain, at 588,968 to 589,417
_2416
B158DRAFT_2417: B158DRAFT_2417 - prepilin-type N-terminal cleavage/methylation domain, at 589,420 to 589,827
_2417
B158DRAFT_2418: B158DRAFT_2418 - Tfp pilus assembly protein FimT, at 589,999 to 590,562
_2418
B158DRAFT_2419: B158DRAFT_2419 - type IV pilus modification protein PilV, at 590,559 to 591,152
_2419
Position (kb) 589
590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 588.458 kb on - strand, within B158DRAFT_2415 at 588.463 kb on - strand, within B158DRAFT_2415 at 588.586 kb on + strand, within B158DRAFT_2415 at 588.614 kb on + strand, within B158DRAFT_2415 at 588.614 kb on + strand, within B158DRAFT_2415 at 588.614 kb on + strand, within B158DRAFT_2415 at 588.622 kb on - strand, within B158DRAFT_2415 at 588.691 kb on + strand at 588.701 kb on + strand at 588.701 kb on + strand at 588.701 kb on + strand at 588.701 kb on + strand at 588.701 kb on + strand at 588.701 kb on + strand at 588.702 kb on - strand at 588.702 kb on - strand at 588.709 kb on - strand at 588.709 kb on - strand at 588.709 kb on - strand at 588.719 kb on + strand at 588.727 kb on + strand at 588.727 kb on + strand at 588.727 kb on + strand at 588.727 kb on + strand at 588.727 kb on + strand at 588.727 kb on + strand at 588.727 kb on + strand at 588.735 kb on - strand at 588.735 kb on - strand at 588.735 kb on - strand at 588.795 kb on + strand at 588.795 kb on + strand at 588.795 kb on + strand at 588.841 kb on + strand at 588.926 kb on + strand at 588.934 kb on - strand at 589.247 kb on - strand, within B158DRAFT_2416 at 589.329 kb on + strand, within B158DRAFT_2416 at 589.337 kb on - strand, within B158DRAFT_2416 at 589.547 kb on + strand, within B158DRAFT_2417 at 589.596 kb on + strand, within B158DRAFT_2417 at 589.596 kb on + strand, within B158DRAFT_2417 at 589.596 kb on + strand, within B158DRAFT_2417 at 589.596 kb on - strand, within B158DRAFT_2417 at 589.604 kb on - strand, within B158DRAFT_2417 at 589.688 kb on - strand, within B158DRAFT_2417 at 589.688 kb on - strand, within B158DRAFT_2417 at 589.805 kb on - strand at 589.850 kb on + strand at 589.960 kb on - strand at 589.996 kb on + strand at 590.175 kb on + strand, within B158DRAFT_2418 at 590.185 kb on + strand, within B158DRAFT_2418 at 590.193 kb on - strand, within B158DRAFT_2418 at 590.193 kb on - strand, within B158DRAFT_2418 at 590.246 kb on + strand, within B158DRAFT_2418 at 590.271 kb on + strand, within B158DRAFT_2418 at 590.271 kb on + strand, within B158DRAFT_2418 at 590.326 kb on - strand, within B158DRAFT_2418 at 590.441 kb on + strand, within B158DRAFT_2418 at 590.441 kb on + strand, within B158DRAFT_2418 at 590.441 kb on + strand, within B158DRAFT_2418 at 590.441 kb on + strand, within B158DRAFT_2418 at 590.449 kb on - strand, within B158DRAFT_2418 at 590.543 kb on + strand at 590.574 kb on + strand at 590.582 kb on - strand at 590.582 kb on - strand at 590.633 kb on + strand, within B158DRAFT_2419 at 590.704 kb on + strand, within B158DRAFT_2419 at 590.744 kb on + strand, within B158DRAFT_2419
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM remove 588,458 - B158DRAFT_2415 0.83 -0.7 588,463 - B158DRAFT_2415 0.84 -0.4 588,586 + B158DRAFT_2415 0.88 -2.7 588,614 + B158DRAFT_2415 0.88 -1.3 588,614 + B158DRAFT_2415 0.88 -1.1 588,614 + B158DRAFT_2415 0.88 -0.9 588,622 - B158DRAFT_2415 0.89 -0.6 588,691 + +0.6 588,701 + -0.6 588,701 + -1.7 588,701 + -1.3 588,701 + +0.2 588,701 + -0.6 588,701 + -1.3 588,702 - -0.9 588,702 - -0.4 588,709 - -0.2 588,709 - -1.2 588,709 - -1.1 588,719 + -1.3 588,727 + -0.1 588,727 + -0.5 588,727 + -1.3 588,727 + -0.9 588,727 + -0.1 588,727 + +0.1 588,727 + +0.4 588,735 - -1.1 588,735 - -0.5 588,735 - +0.3 588,795 + -0.6 588,795 + -1.2 588,795 + -0.2 588,841 + +0.9 588,926 + -0.4 588,934 - -0.3 589,247 - B158DRAFT_2416 0.62 +0.0 589,329 + B158DRAFT_2416 0.80 +0.1 589,337 - B158DRAFT_2416 0.82 +1.8 589,547 + B158DRAFT_2417 0.31 -0.3 589,596 + B158DRAFT_2417 0.43 +0.8 589,596 + B158DRAFT_2417 0.43 +0.1 589,596 + B158DRAFT_2417 0.43 +0.2 589,596 - B158DRAFT_2417 0.43 +1.0 589,604 - B158DRAFT_2417 0.45 +0.8 589,688 - B158DRAFT_2417 0.66 +2.4 589,688 - B158DRAFT_2417 0.66 +0.2 589,805 - +0.4 589,850 + -1.3 589,960 - -0.2 589,996 + +0.2 590,175 + B158DRAFT_2418 0.31 +0.7 590,185 + B158DRAFT_2418 0.33 +0.1 590,193 - B158DRAFT_2418 0.34 +0.1 590,193 - B158DRAFT_2418 0.34 -0.5 590,246 + B158DRAFT_2418 0.44 +0.5 590,271 + B158DRAFT_2418 0.48 -0.5 590,271 + B158DRAFT_2418 0.48 +0.5 590,326 - B158DRAFT_2418 0.58 +0.8 590,441 + B158DRAFT_2418 0.78 +0.2 590,441 + B158DRAFT_2418 0.78 +0.1 590,441 + B158DRAFT_2418 0.78 -0.4 590,441 + B158DRAFT_2418 0.78 -0.2 590,449 - B158DRAFT_2418 0.80 +0.2 590,543 + -1.5 590,574 + +0.0 590,582 - -0.0 590,582 - -0.1 590,633 + B158DRAFT_2419 0.12 -0.0 590,704 + B158DRAFT_2419 0.24 +1.9 590,744 + B158DRAFT_2419 0.31 -1.5
Or see this region's nucleotide sequence