Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1724

Experiment: m.b. nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1723 and B158DRAFT_1724 are separated by 46 nucleotidesB158DRAFT_1724 and B158DRAFT_1725 are separated by 13 nucleotidesB158DRAFT_1725 and B158DRAFT_1726 overlap by 1 nucleotidesB158DRAFT_1726 and B158DRAFT_1727 overlap by 1 nucleotides B158DRAFT_1723: B158DRAFT_1723 - hypothetical protein, at 1,797,700 to 1,799,004 _1723 B158DRAFT_1724: B158DRAFT_1724 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 1,799,051 to 1,799,773 _1724 B158DRAFT_1725: B158DRAFT_1725 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 1,799,787 to 1,800,536 _1725 B158DRAFT_1726: B158DRAFT_1726 - hypothetical protein, at 1,800,536 to 1,800,769 _1726 B158DRAFT_1727: B158DRAFT_1727 - ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2), at 1,800,769 to 1,802,808 _1727 Position (kb) 1799 1800Strain fitness (log2 ratio) -3 -2 -1 0 1at 1798.067 kb on + strand, within B158DRAFT_1723at 1798.067 kb on - strand, within B158DRAFT_1723at 1798.067 kb on - strand, within B158DRAFT_1723at 1798.084 kb on + strand, within B158DRAFT_1723at 1798.112 kb on - strand, within B158DRAFT_1723at 1798.152 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.167 kb on + strand, within B158DRAFT_1723at 1798.170 kb on - strand, within B158DRAFT_1723at 1798.170 kb on - strand, within B158DRAFT_1723at 1798.175 kb on - strand, within B158DRAFT_1723at 1798.177 kb on - strand, within B158DRAFT_1723at 1798.195 kb on - strand, within B158DRAFT_1723at 1798.220 kb on + strand, within B158DRAFT_1723at 1798.344 kb on + strand, within B158DRAFT_1723at 1798.352 kb on - strand, within B158DRAFT_1723at 1798.502 kb on + strand, within B158DRAFT_1723at 1798.502 kb on + strand, within B158DRAFT_1723at 1798.510 kb on - strand, within B158DRAFT_1723at 1798.510 kb on - strand, within B158DRAFT_1723at 1798.510 kb on - strand, within B158DRAFT_1723at 1798.659 kb on - strand, within B158DRAFT_1723at 1798.702 kb on + strand, within B158DRAFT_1723at 1798.702 kb on + strand, within B158DRAFT_1723at 1798.702 kb on + strand, within B158DRAFT_1723at 1798.710 kb on - strand, within B158DRAFT_1723at 1798.710 kb on - strand, within B158DRAFT_1723at 1798.728 kb on + strand, within B158DRAFT_1723at 1798.728 kb on + strand, within B158DRAFT_1723at 1798.731 kb on - strand, within B158DRAFT_1723at 1798.736 kb on - strand, within B158DRAFT_1723at 1798.741 kb on - strand, within B158DRAFT_1723at 1798.751 kb on - strand, within B158DRAFT_1723at 1798.762 kb on - strand, within B158DRAFT_1723at 1798.860 kb on + strand, within B158DRAFT_1723at 1799.053 kb on + strandat 1799.129 kb on + strand, within B158DRAFT_1724at 1799.129 kb on - strand, within B158DRAFT_1724at 1799.166 kb on + strand, within B158DRAFT_1724at 1799.166 kb on + strand, within B158DRAFT_1724at 1799.193 kb on + strand, within B158DRAFT_1724at 1799.201 kb on - strand, within B158DRAFT_1724at 1799.318 kb on + strand, within B158DRAFT_1724at 1799.364 kb on + strand, within B158DRAFT_1724at 1799.509 kb on + strand, within B158DRAFT_1724at 1799.524 kb on - strand, within B158DRAFT_1724at 1799.695 kb on + strand, within B158DRAFT_1724at 1799.805 kb on - strandat 1799.830 kb on + strandat 1799.830 kb on + strandat 1799.893 kb on + strand, within B158DRAFT_1725at 1799.939 kb on - strand, within B158DRAFT_1725at 1799.994 kb on + strand, within B158DRAFT_1725at 1800.048 kb on - strand, within B158DRAFT_1725at 1800.048 kb on - strand, within B158DRAFT_1725at 1800.085 kb on + strand, within B158DRAFT_1725at 1800.093 kb on - strand, within B158DRAFT_1725at 1800.131 kb on + strand, within B158DRAFT_1725at 1800.131 kb on - strand, within B158DRAFT_1725at 1800.139 kb on - strand, within B158DRAFT_1725at 1800.139 kb on - strand, within B158DRAFT_1725at 1800.166 kb on + strand, within B158DRAFT_1725at 1800.182 kb on + strand, within B158DRAFT_1725at 1800.190 kb on - strand, within B158DRAFT_1725at 1800.198 kb on + strand, within B158DRAFT_1725at 1800.198 kb on - strand, within B158DRAFT_1725at 1800.246 kb on + strand, within B158DRAFT_1725at 1800.246 kb on + strand, within B158DRAFT_1725at 1800.246 kb on + strand, within B158DRAFT_1725at 1800.254 kb on - strand, within B158DRAFT_1725at 1800.254 kb on - strand, within B158DRAFT_1725at 1800.260 kb on + strand, within B158DRAFT_1725at 1800.285 kb on - strand, within B158DRAFT_1725at 1800.290 kb on - strand, within B158DRAFT_1725at 1800.304 kb on + strand, within B158DRAFT_1725at 1800.312 kb on - strand, within B158DRAFT_1725at 1800.328 kb on + strand, within B158DRAFT_1725at 1800.362 kb on + strand, within B158DRAFT_1725at 1800.406 kb on + strand, within B158DRAFT_1725at 1800.409 kb on - strand, within B158DRAFT_1725at 1800.419 kb on - strand, within B158DRAFT_1725at 1800.427 kb on + strand, within B158DRAFT_1725at 1800.435 kb on - strand, within B158DRAFT_1725at 1800.435 kb on - strand, within B158DRAFT_1725at 1800.440 kb on - strand, within B158DRAFT_1725at 1800.467 kb on - strandat 1800.474 kb on + strandat 1800.547 kb on + strandat 1800.556 kb on - strandat 1800.596 kb on + strand, within B158DRAFT_1726at 1800.596 kb on + strand, within B158DRAFT_1726at 1800.693 kb on + strand, within B158DRAFT_1726at 1800.700 kb on + strand, within B158DRAFT_1726at 1800.708 kb on - strand, within B158DRAFT_1726at 1800.708 kb on - strand, within B158DRAFT_1726at 1800.708 kb on - strand, within B158DRAFT_1726

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM
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1,798,067 + B158DRAFT_1723 0.28 -0.5
1,798,067 - B158DRAFT_1723 0.28 -1.0
1,798,067 - B158DRAFT_1723 0.28 +0.0
1,798,084 + B158DRAFT_1723 0.29 -0.1
1,798,112 - B158DRAFT_1723 0.32 +0.3
1,798,152 + B158DRAFT_1723 0.35 -1.0
1,798,162 + B158DRAFT_1723 0.35 -1.0
1,798,162 + B158DRAFT_1723 0.35 +0.7
1,798,162 + B158DRAFT_1723 0.35 -0.3
1,798,162 + B158DRAFT_1723 0.35 -0.8
1,798,162 + B158DRAFT_1723 0.35 +0.1
1,798,167 + B158DRAFT_1723 0.36 -0.0
1,798,170 - B158DRAFT_1723 0.36 -1.6
1,798,170 - B158DRAFT_1723 0.36 +0.6
1,798,175 - B158DRAFT_1723 0.36 -0.4
1,798,177 - B158DRAFT_1723 0.37 +0.1
1,798,195 - B158DRAFT_1723 0.38 -0.4
1,798,220 + B158DRAFT_1723 0.40 -0.2
1,798,344 + B158DRAFT_1723 0.49 +0.1
1,798,352 - B158DRAFT_1723 0.50 -0.2
1,798,502 + B158DRAFT_1723 0.61 +0.9
1,798,502 + B158DRAFT_1723 0.61 -0.2
1,798,510 - B158DRAFT_1723 0.62 -1.7
1,798,510 - B158DRAFT_1723 0.62 -1.1
1,798,510 - B158DRAFT_1723 0.62 +0.4
1,798,659 - B158DRAFT_1723 0.73 -0.2
1,798,702 + B158DRAFT_1723 0.77 -0.2
1,798,702 + B158DRAFT_1723 0.77 -0.8
1,798,702 + B158DRAFT_1723 0.77 -1.2
1,798,710 - B158DRAFT_1723 0.77 -0.6
1,798,710 - B158DRAFT_1723 0.77 +1.2
1,798,728 + B158DRAFT_1723 0.79 +0.1
1,798,728 + B158DRAFT_1723 0.79 +0.1
1,798,731 - B158DRAFT_1723 0.79 -1.1
1,798,736 - B158DRAFT_1723 0.79 -1.1
1,798,741 - B158DRAFT_1723 0.80 -0.3
1,798,751 - B158DRAFT_1723 0.81 -0.2
1,798,762 - B158DRAFT_1723 0.81 -0.2
1,798,860 + B158DRAFT_1723 0.89 -0.7
1,799,053 + +0.3
1,799,129 + B158DRAFT_1724 0.11 +0.1
1,799,129 - B158DRAFT_1724 0.11 -0.0
1,799,166 + B158DRAFT_1724 0.16 -0.2
1,799,166 + B158DRAFT_1724 0.16 -1.6
1,799,193 + B158DRAFT_1724 0.20 -0.3
1,799,201 - B158DRAFT_1724 0.21 +0.7
1,799,318 + B158DRAFT_1724 0.37 -1.3
1,799,364 + B158DRAFT_1724 0.43 -0.8
1,799,509 + B158DRAFT_1724 0.63 -0.5
1,799,524 - B158DRAFT_1724 0.65 -0.3
1,799,695 + B158DRAFT_1724 0.89 -0.1
1,799,805 - -0.2
1,799,830 + -0.5
1,799,830 + -1.1
1,799,893 + B158DRAFT_1725 0.14 +0.0
1,799,939 - B158DRAFT_1725 0.20 -1.1
1,799,994 + B158DRAFT_1725 0.28 -0.0
1,800,048 - B158DRAFT_1725 0.35 -3.2
1,800,048 - B158DRAFT_1725 0.35 +0.9
1,800,085 + B158DRAFT_1725 0.40 +0.0
1,800,093 - B158DRAFT_1725 0.41 -0.3
1,800,131 + B158DRAFT_1725 0.46 -0.1
1,800,131 - B158DRAFT_1725 0.46 -0.6
1,800,139 - B158DRAFT_1725 0.47 +0.3
1,800,139 - B158DRAFT_1725 0.47 -0.1
1,800,166 + B158DRAFT_1725 0.51 -0.5
1,800,182 + B158DRAFT_1725 0.53 -0.1
1,800,190 - B158DRAFT_1725 0.54 -0.7
1,800,198 + B158DRAFT_1725 0.55 +0.7
1,800,198 - B158DRAFT_1725 0.55 -0.2
1,800,246 + B158DRAFT_1725 0.61 -0.3
1,800,246 + B158DRAFT_1725 0.61 -2.0
1,800,246 + B158DRAFT_1725 0.61 -0.1
1,800,254 - B158DRAFT_1725 0.62 -0.5
1,800,254 - B158DRAFT_1725 0.62 -0.4
1,800,260 + B158DRAFT_1725 0.63 -0.9
1,800,285 - B158DRAFT_1725 0.66 +0.6
1,800,290 - B158DRAFT_1725 0.67 -0.6
1,800,304 + B158DRAFT_1725 0.69 -0.5
1,800,312 - B158DRAFT_1725 0.70 -0.0
1,800,328 + B158DRAFT_1725 0.72 -0.7
1,800,362 + B158DRAFT_1725 0.77 -0.4
1,800,406 + B158DRAFT_1725 0.83 -0.2
1,800,409 - B158DRAFT_1725 0.83 -0.1
1,800,419 - B158DRAFT_1725 0.84 -1.0
1,800,427 + B158DRAFT_1725 0.85 -0.3
1,800,435 - B158DRAFT_1725 0.86 -0.1
1,800,435 - B158DRAFT_1725 0.86 -0.7
1,800,440 - B158DRAFT_1725 0.87 +0.3
1,800,467 - -0.9
1,800,474 + -0.4
1,800,547 + -1.4
1,800,556 - -0.2
1,800,596 + B158DRAFT_1726 0.26 +0.7
1,800,596 + B158DRAFT_1726 0.26 +0.9
1,800,693 + B158DRAFT_1726 0.67 -0.3
1,800,700 + B158DRAFT_1726 0.70 -0.2
1,800,708 - B158DRAFT_1726 0.74 -0.1
1,800,708 - B158DRAFT_1726 0.74 -0.6
1,800,708 - B158DRAFT_1726 0.74 -0.2

Or see this region's nucleotide sequence