Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1504

Experiment: m.b. nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1502 and B158DRAFT_1503 are separated by 62 nucleotidesB158DRAFT_1503 and B158DRAFT_1504 are separated by 145 nucleotidesB158DRAFT_1504 and B158DRAFT_1505 are separated by 33 nucleotides B158DRAFT_1502: B158DRAFT_1502 - Phosphohistidine phosphatase SixA, at 1,558,583 to 1,559,119 _1502 B158DRAFT_1503: B158DRAFT_1503 - hypothetical protein, at 1,559,182 to 1,559,763 _1503 B158DRAFT_1504: B158DRAFT_1504 - Uncharacterized conserved protein, at 1,559,909 to 1,560,250 _1504 B158DRAFT_1505: B158DRAFT_1505 - ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92), at 1,560,284 to 1,562,548 _1505 Position (kb) 1559 1560 1561Strain fitness (log2 ratio) -2 -1 0 1 2at 1558.927 kb on - strand, within B158DRAFT_1502at 1558.962 kb on + strand, within B158DRAFT_1502at 1558.962 kb on + strand, within B158DRAFT_1502at 1558.970 kb on - strand, within B158DRAFT_1502at 1558.992 kb on - strand, within B158DRAFT_1502at 1559.014 kb on + strand, within B158DRAFT_1502at 1559.048 kb on + strand, within B158DRAFT_1502at 1559.122 kb on + strandat 1559.130 kb on - strandat 1559.282 kb on + strand, within B158DRAFT_1503at 1559.282 kb on + strand, within B158DRAFT_1503at 1559.290 kb on - strand, within B158DRAFT_1503at 1559.290 kb on - strand, within B158DRAFT_1503at 1559.320 kb on + strand, within B158DRAFT_1503at 1559.350 kb on + strand, within B158DRAFT_1503at 1559.358 kb on - strand, within B158DRAFT_1503at 1559.358 kb on - strand, within B158DRAFT_1503at 1559.376 kb on + strand, within B158DRAFT_1503at 1559.389 kb on - strand, within B158DRAFT_1503at 1559.403 kb on - strand, within B158DRAFT_1503at 1559.590 kb on - strand, within B158DRAFT_1503at 1559.602 kb on + strand, within B158DRAFT_1503at 1559.667 kb on - strand, within B158DRAFT_1503at 1559.677 kb on - strand, within B158DRAFT_1503at 1559.689 kb on - strand, within B158DRAFT_1503at 1559.705 kb on + strandat 1559.707 kb on + strandat 1559.713 kb on + strandat 1559.714 kb on - strandat 1559.800 kb on + strandat 1559.855 kb on + strandat 1559.955 kb on + strand, within B158DRAFT_1504at 1559.963 kb on - strand, within B158DRAFT_1504at 1559.963 kb on - strand, within B158DRAFT_1504at 1559.963 kb on - strand, within B158DRAFT_1504at 1559.974 kb on - strand, within B158DRAFT_1504at 1560.033 kb on + strand, within B158DRAFT_1504at 1560.034 kb on - strand, within B158DRAFT_1504at 1560.112 kb on - strand, within B158DRAFT_1504at 1560.125 kb on + strand, within B158DRAFT_1504at 1560.125 kb on + strand, within B158DRAFT_1504at 1560.126 kb on + strand, within B158DRAFT_1504at 1560.126 kb on + strand, within B158DRAFT_1504at 1560.131 kb on + strand, within B158DRAFT_1504at 1560.139 kb on - strand, within B158DRAFT_1504at 1560.153 kb on - strand, within B158DRAFT_1504at 1560.153 kb on - strand, within B158DRAFT_1504at 1560.153 kb on - strand, within B158DRAFT_1504at 1560.153 kb on - strand, within B158DRAFT_1504at 1560.153 kb on - strand, within B158DRAFT_1504at 1560.174 kb on - strand, within B158DRAFT_1504at 1560.174 kb on - strand, within B158DRAFT_1504at 1560.174 kb on - strand, within B158DRAFT_1504at 1560.198 kb on + strand, within B158DRAFT_1504at 1560.205 kb on + strand, within B158DRAFT_1504at 1560.213 kb on - strand, within B158DRAFT_1504at 1560.297 kb on - strandat 1560.335 kb on + strandat 1560.360 kb on + strandat 1560.360 kb on + strandat 1560.409 kb on - strandat 1560.410 kb on - strandat 1560.418 kb on - strandat 1560.441 kb on + strandat 1560.482 kb on + strandat 1560.483 kb on - strandat 1560.508 kb on - strandat 1560.566 kb on + strand, within B158DRAFT_1505at 1560.574 kb on - strand, within B158DRAFT_1505at 1560.574 kb on - strand, within B158DRAFT_1505at 1560.574 kb on - strand, within B158DRAFT_1505at 1560.605 kb on - strand, within B158DRAFT_1505at 1560.605 kb on - strand, within B158DRAFT_1505at 1560.652 kb on - strand, within B158DRAFT_1505at 1560.664 kb on + strand, within B158DRAFT_1505at 1560.664 kb on + strand, within B158DRAFT_1505at 1560.745 kb on + strand, within B158DRAFT_1505at 1560.753 kb on - strand, within B158DRAFT_1505at 1560.760 kb on - strand, within B158DRAFT_1505at 1560.771 kb on + strand, within B158DRAFT_1505at 1560.836 kb on - strand, within B158DRAFT_1505at 1560.836 kb on - strand, within B158DRAFT_1505at 1560.836 kb on - strand, within B158DRAFT_1505at 1560.836 kb on - strand, within B158DRAFT_1505at 1560.836 kb on - strand, within B158DRAFT_1505at 1560.836 kb on - strand, within B158DRAFT_1505at 1560.878 kb on + strand, within B158DRAFT_1505at 1560.913 kb on + strand, within B158DRAFT_1505at 1560.948 kb on + strand, within B158DRAFT_1505at 1560.978 kb on + strand, within B158DRAFT_1505at 1561.009 kb on + strand, within B158DRAFT_1505at 1561.017 kb on + strand, within B158DRAFT_1505at 1561.017 kb on + strand, within B158DRAFT_1505at 1561.017 kb on + strand, within B158DRAFT_1505at 1561.025 kb on - strand, within B158DRAFT_1505at 1561.075 kb on + strand, within B158DRAFT_1505at 1561.153 kb on + strand, within B158DRAFT_1505at 1561.171 kb on - strand, within B158DRAFT_1505at 1561.171 kb on - strand, within B158DRAFT_1505at 1561.176 kb on + strand, within B158DRAFT_1505at 1561.193 kb on - strand, within B158DRAFT_1505at 1561.193 kb on - strand, within B158DRAFT_1505at 1561.205 kb on + strand, within B158DRAFT_1505at 1561.210 kb on + strand, within B158DRAFT_1505at 1561.230 kb on + strand, within B158DRAFT_1505

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM
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1,558,927 - B158DRAFT_1502 0.64 -0.4
1,558,962 + B158DRAFT_1502 0.71 -1.4
1,558,962 + B158DRAFT_1502 0.71 +0.2
1,558,970 - B158DRAFT_1502 0.72 -0.1
1,558,992 - B158DRAFT_1502 0.76 -0.9
1,559,014 + B158DRAFT_1502 0.80 -0.6
1,559,048 + B158DRAFT_1502 0.87 -0.2
1,559,122 + -0.2
1,559,130 - -0.6
1,559,282 + B158DRAFT_1503 0.17 -0.3
1,559,282 + B158DRAFT_1503 0.17 -0.4
1,559,290 - B158DRAFT_1503 0.19 -0.5
1,559,290 - B158DRAFT_1503 0.19 -1.0
1,559,320 + B158DRAFT_1503 0.24 +1.3
1,559,350 + B158DRAFT_1503 0.29 +0.1
1,559,358 - B158DRAFT_1503 0.30 +0.2
1,559,358 - B158DRAFT_1503 0.30 -0.4
1,559,376 + B158DRAFT_1503 0.33 -0.3
1,559,389 - B158DRAFT_1503 0.36 -0.3
1,559,403 - B158DRAFT_1503 0.38 -1.8
1,559,590 - B158DRAFT_1503 0.70 -0.7
1,559,602 + B158DRAFT_1503 0.72 -0.1
1,559,667 - B158DRAFT_1503 0.83 -0.7
1,559,677 - B158DRAFT_1503 0.85 -0.2
1,559,689 - B158DRAFT_1503 0.87 -0.2
1,559,705 + +0.5
1,559,707 + +0.2
1,559,713 + -0.2
1,559,714 - -0.5
1,559,800 + -0.1
1,559,855 + +0.8
1,559,955 + B158DRAFT_1504 0.13 +1.2
1,559,963 - B158DRAFT_1504 0.16 +1.6
1,559,963 - B158DRAFT_1504 0.16 +1.0
1,559,963 - B158DRAFT_1504 0.16 +0.5
1,559,974 - B158DRAFT_1504 0.19 +1.0
1,560,033 + B158DRAFT_1504 0.36 +0.4
1,560,034 - B158DRAFT_1504 0.37 +1.0
1,560,112 - B158DRAFT_1504 0.59 +0.4
1,560,125 + B158DRAFT_1504 0.63 +1.9
1,560,125 + B158DRAFT_1504 0.63 +1.1
1,560,126 + B158DRAFT_1504 0.63 +0.5
1,560,126 + B158DRAFT_1504 0.63 +0.2
1,560,131 + B158DRAFT_1504 0.65 +0.9
1,560,139 - B158DRAFT_1504 0.67 +0.3
1,560,153 - B158DRAFT_1504 0.71 +1.4
1,560,153 - B158DRAFT_1504 0.71 +0.7
1,560,153 - B158DRAFT_1504 0.71 +0.9
1,560,153 - B158DRAFT_1504 0.71 +0.9
1,560,153 - B158DRAFT_1504 0.71 +1.6
1,560,174 - B158DRAFT_1504 0.77 +0.8
1,560,174 - B158DRAFT_1504 0.77 +1.0
1,560,174 - B158DRAFT_1504 0.77 +0.3
1,560,198 + B158DRAFT_1504 0.85 +1.4
1,560,205 + B158DRAFT_1504 0.87 +1.7
1,560,213 - B158DRAFT_1504 0.89 +0.9
1,560,297 - +1.2
1,560,335 + +1.2
1,560,360 + -0.9
1,560,360 + +0.7
1,560,409 - +1.6
1,560,410 - +0.4
1,560,418 - +0.1
1,560,441 + +1.2
1,560,482 + +0.9
1,560,483 - +0.6
1,560,508 - +1.0
1,560,566 + B158DRAFT_1505 0.12 +1.4
1,560,574 - B158DRAFT_1505 0.13 +1.7
1,560,574 - B158DRAFT_1505 0.13 +0.3
1,560,574 - B158DRAFT_1505 0.13 +0.7
1,560,605 - B158DRAFT_1505 0.14 +0.9
1,560,605 - B158DRAFT_1505 0.14 +0.1
1,560,652 - B158DRAFT_1505 0.16 +0.7
1,560,664 + B158DRAFT_1505 0.17 +0.8
1,560,664 + B158DRAFT_1505 0.17 +0.5
1,560,745 + B158DRAFT_1505 0.20 +1.4
1,560,753 - B158DRAFT_1505 0.21 +0.4
1,560,760 - B158DRAFT_1505 0.21 +1.1
1,560,771 + B158DRAFT_1505 0.22 +0.3
1,560,836 - B158DRAFT_1505 0.24 +1.9
1,560,836 - B158DRAFT_1505 0.24 +1.2
1,560,836 - B158DRAFT_1505 0.24 -0.1
1,560,836 - B158DRAFT_1505 0.24 +1.5
1,560,836 - B158DRAFT_1505 0.24 +1.0
1,560,836 - B158DRAFT_1505 0.24 +0.5
1,560,878 + B158DRAFT_1505 0.26 +0.2
1,560,913 + B158DRAFT_1505 0.28 +0.4
1,560,948 + B158DRAFT_1505 0.29 +0.7
1,560,978 + B158DRAFT_1505 0.31 +1.3
1,561,009 + B158DRAFT_1505 0.32 +1.0
1,561,017 + B158DRAFT_1505 0.32 +0.7
1,561,017 + B158DRAFT_1505 0.32 +1.1
1,561,017 + B158DRAFT_1505 0.32 +0.6
1,561,025 - B158DRAFT_1505 0.33 +1.2
1,561,075 + B158DRAFT_1505 0.35 +1.6
1,561,153 + B158DRAFT_1505 0.38 +0.9
1,561,171 - B158DRAFT_1505 0.39 +0.9
1,561,171 - B158DRAFT_1505 0.39 +1.1
1,561,176 + B158DRAFT_1505 0.39 +0.5
1,561,193 - B158DRAFT_1505 0.40 +0.5
1,561,193 - B158DRAFT_1505 0.40 +0.7
1,561,205 + B158DRAFT_1505 0.41 +0.9
1,561,210 + B158DRAFT_1505 0.41 +0.8
1,561,230 + B158DRAFT_1505 0.42 +0.4

Or see this region's nucleotide sequence