Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1216

Experiment: m.b. nitrate 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1213 and B158DRAFT_1214 are separated by 53 nucleotidesB158DRAFT_1214 and B158DRAFT_1215 overlap by 46 nucleotidesB158DRAFT_1215 and B158DRAFT_1216 are separated by 65 nucleotidesB158DRAFT_1216 and B158DRAFT_1217 are separated by 114 nucleotides B158DRAFT_1213: B158DRAFT_1213 - hypothetical protein, at 1,252,511 to 1,253,134 _1213 B158DRAFT_1214: B158DRAFT_1214 - hypothetical protein, at 1,253,188 to 1,253,379 _1214 B158DRAFT_1215: B158DRAFT_1215 - Superoxide dismutase, at 1,253,334 to 1,253,915 _1215 B158DRAFT_1216: B158DRAFT_1216 - Ion channel., at 1,253,981 to 1,254,427 _1216 B158DRAFT_1217: B158DRAFT_1217 - Predicted membrane protein (DUF2157)., at 1,254,542 to 1,255,873 _1217 Position (kb) 1253 1254 1255Strain fitness (log2 ratio) -3 -2 -1 0 1at 1252.997 kb on + strand, within B158DRAFT_1213at 1253.082 kb on - strandat 1253.109 kb on + strandat 1253.127 kb on - strandat 1253.233 kb on + strand, within B158DRAFT_1214at 1253.241 kb on - strand, within B158DRAFT_1214at 1253.284 kb on + strand, within B158DRAFT_1214at 1254.192 kb on + strand, within B158DRAFT_1216at 1254.289 kb on + strand, within B158DRAFT_1216at 1254.297 kb on - strand, within B158DRAFT_1216at 1254.299 kb on + strand, within B158DRAFT_1216at 1254.301 kb on + strand, within B158DRAFT_1216at 1254.314 kb on - strand, within B158DRAFT_1216at 1254.332 kb on - strand, within B158DRAFT_1216at 1254.363 kb on + strand, within B158DRAFT_1216at 1254.395 kb on + strandat 1254.397 kb on + strandat 1254.599 kb on - strandat 1254.603 kb on + strandat 1254.603 kb on + strandat 1254.663 kb on - strandat 1254.689 kb on + strand, within B158DRAFT_1217at 1254.697 kb on - strand, within B158DRAFT_1217at 1254.706 kb on + strand, within B158DRAFT_1217at 1254.746 kb on + strand, within B158DRAFT_1217at 1254.787 kb on + strand, within B158DRAFT_1217at 1254.789 kb on + strand, within B158DRAFT_1217at 1254.797 kb on + strand, within B158DRAFT_1217at 1254.823 kb on + strand, within B158DRAFT_1217at 1254.829 kb on + strand, within B158DRAFT_1217at 1254.829 kb on + strand, within B158DRAFT_1217at 1254.838 kb on - strand, within B158DRAFT_1217at 1254.853 kb on + strand, within B158DRAFT_1217at 1254.861 kb on - strand, within B158DRAFT_1217at 1254.861 kb on - strand, within B158DRAFT_1217at 1254.861 kb on - strand, within B158DRAFT_1217at 1254.884 kb on + strand, within B158DRAFT_1217at 1254.929 kb on - strand, within B158DRAFT_1217at 1254.949 kb on + strand, within B158DRAFT_1217at 1254.984 kb on + strand, within B158DRAFT_1217at 1255.014 kb on - strand, within B158DRAFT_1217at 1255.055 kb on + strand, within B158DRAFT_1217at 1255.064 kb on - strand, within B158DRAFT_1217at 1255.074 kb on - strand, within B158DRAFT_1217at 1255.120 kb on + strand, within B158DRAFT_1217at 1255.132 kb on + strand, within B158DRAFT_1217at 1255.151 kb on + strand, within B158DRAFT_1217at 1255.159 kb on - strand, within B158DRAFT_1217at 1255.222 kb on + strand, within B158DRAFT_1217at 1255.246 kb on + strand, within B158DRAFT_1217at 1255.265 kb on - strand, within B158DRAFT_1217at 1255.313 kb on - strand, within B158DRAFT_1217at 1255.379 kb on + strand, within B158DRAFT_1217at 1255.384 kb on + strand, within B158DRAFT_1217at 1255.394 kb on - strand, within B158DRAFT_1217

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 400 mM
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1,252,997 + B158DRAFT_1213 0.78 +0.2
1,253,082 - -0.2
1,253,109 + -0.6
1,253,127 - +0.5
1,253,233 + B158DRAFT_1214 0.23 -1.4
1,253,241 - B158DRAFT_1214 0.28 +1.1
1,253,284 + B158DRAFT_1214 0.50 -1.5
1,254,192 + B158DRAFT_1216 0.47 -0.4
1,254,289 + B158DRAFT_1216 0.69 -3.1
1,254,297 - B158DRAFT_1216 0.71 +0.3
1,254,299 + B158DRAFT_1216 0.71 -0.1
1,254,301 + B158DRAFT_1216 0.72 +0.9
1,254,314 - B158DRAFT_1216 0.74 +0.1
1,254,332 - B158DRAFT_1216 0.79 +0.3
1,254,363 + B158DRAFT_1216 0.85 +0.5
1,254,395 + -3.0
1,254,397 + -0.8
1,254,599 - -0.6
1,254,603 + +0.4
1,254,603 + -0.1
1,254,663 - -0.6
1,254,689 + B158DRAFT_1217 0.11 +0.2
1,254,697 - B158DRAFT_1217 0.12 +0.3
1,254,706 + B158DRAFT_1217 0.12 -0.0
1,254,746 + B158DRAFT_1217 0.15 +0.7
1,254,787 + B158DRAFT_1217 0.18 -0.2
1,254,789 + B158DRAFT_1217 0.19 -0.3
1,254,797 + B158DRAFT_1217 0.19 -0.6
1,254,823 + B158DRAFT_1217 0.21 +0.2
1,254,829 + B158DRAFT_1217 0.22 -2.7
1,254,829 + B158DRAFT_1217 0.22 -0.2
1,254,838 - B158DRAFT_1217 0.22 +0.1
1,254,853 + B158DRAFT_1217 0.23 -0.8
1,254,861 - B158DRAFT_1217 0.24 -0.6
1,254,861 - B158DRAFT_1217 0.24 +0.7
1,254,861 - B158DRAFT_1217 0.24 -0.5
1,254,884 + B158DRAFT_1217 0.26 -0.2
1,254,929 - B158DRAFT_1217 0.29 +0.4
1,254,949 + B158DRAFT_1217 0.31 -3.2
1,254,984 + B158DRAFT_1217 0.33 -0.1
1,255,014 - B158DRAFT_1217 0.35 +0.6
1,255,055 + B158DRAFT_1217 0.39 +0.5
1,255,064 - B158DRAFT_1217 0.39 -2.2
1,255,074 - B158DRAFT_1217 0.40 -0.4
1,255,120 + B158DRAFT_1217 0.43 -2.3
1,255,132 + B158DRAFT_1217 0.44 +0.8
1,255,151 + B158DRAFT_1217 0.46 +0.8
1,255,159 - B158DRAFT_1217 0.46 -0.1
1,255,222 + B158DRAFT_1217 0.51 +0.5
1,255,246 + B158DRAFT_1217 0.53 +0.0
1,255,265 - B158DRAFT_1217 0.54 +0.7
1,255,313 - B158DRAFT_1217 0.58 -0.3
1,255,379 + B158DRAFT_1217 0.63 +0.4
1,255,384 + B158DRAFT_1217 0.63 +0.9
1,255,394 - B158DRAFT_1217 0.64 +0.0

Or see this region's nucleotide sequence