Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1068

Experiment: m.b. nitrate 400 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1066 and B158DRAFT_1067 are separated by 40 nucleotidesB158DRAFT_1067 and B158DRAFT_1068 are separated by 32 nucleotidesB158DRAFT_1068 and B158DRAFT_1069 are separated by 21 nucleotides B158DRAFT_1066: B158DRAFT_1066 - anion transporter, at 1,106,034 to 1,107,428 _1066 B158DRAFT_1067: B158DRAFT_1067 - hypothetical protein, at 1,107,469 to 1,107,729 _1067 B158DRAFT_1068: B158DRAFT_1068 - D-alanyl-D-alanine carboxypeptidase, at 1,107,762 to 1,108,472 _1068 B158DRAFT_1069: B158DRAFT_1069 - succinyldiaminopimelate desuccinylase (EC 3.5.1.18), at 1,108,494 to 1,109,639 _1069 Position (kb) 1107 1108 1109Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1106.787 kb on - strand, within B158DRAFT_1066at 1106.860 kb on + strand, within B158DRAFT_1066at 1106.908 kb on - strand, within B158DRAFT_1066at 1106.909 kb on - strand, within B158DRAFT_1066at 1106.949 kb on + strand, within B158DRAFT_1066at 1106.959 kb on + strand, within B158DRAFT_1066at 1106.963 kb on + strand, within B158DRAFT_1066at 1106.991 kb on + strand, within B158DRAFT_1066at 1107.059 kb on + strand, within B158DRAFT_1066at 1107.149 kb on + strand, within B158DRAFT_1066at 1107.149 kb on + strand, within B158DRAFT_1066at 1107.149 kb on + strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.186 kb on + strand, within B158DRAFT_1066at 1107.256 kb on - strand, within B158DRAFT_1066at 1107.311 kb on - strandat 1107.334 kb on + strandat 1107.344 kb on + strandat 1107.344 kb on + strandat 1107.344 kb on + strandat 1107.344 kb on + strandat 1107.344 kb on + strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.354 kb on + strandat 1107.364 kb on + strandat 1107.364 kb on + strandat 1107.367 kb on - strandat 1107.391 kb on - strandat 1107.411 kb on - strandat 1107.417 kb on - strandat 1107.468 kb on - strandat 1107.610 kb on - strand, within B158DRAFT_1067at 1107.615 kb on + strand, within B158DRAFT_1067at 1107.621 kb on + strand, within B158DRAFT_1067at 1107.631 kb on + strand, within B158DRAFT_1067at 1107.712 kb on + strandat 1107.714 kb on - strandat 1107.736 kb on - strandat 1107.762 kb on + strandat 1107.770 kb on - strandat 1107.777 kb on - strandat 1107.814 kb on - strandat 1108.487 kb on - strandat 1108.509 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 400 mM
remove
1,106,787 - B158DRAFT_1066 0.54 -0.1
1,106,860 + B158DRAFT_1066 0.59 -0.3
1,106,908 - B158DRAFT_1066 0.63 -0.1
1,106,909 - B158DRAFT_1066 0.63 -1.3
1,106,949 + B158DRAFT_1066 0.66 +0.5
1,106,959 + B158DRAFT_1066 0.66 -0.1
1,106,963 + B158DRAFT_1066 0.67 +0.1
1,106,991 + B158DRAFT_1066 0.69 -0.4
1,107,059 + B158DRAFT_1066 0.73 +0.3
1,107,149 + B158DRAFT_1066 0.80 -0.7
1,107,149 + B158DRAFT_1066 0.80 -0.2
1,107,149 + B158DRAFT_1066 0.80 +0.6
1,107,157 - B158DRAFT_1066 0.81 -0.2
1,107,157 - B158DRAFT_1066 0.81 +0.1
1,107,157 - B158DRAFT_1066 0.81 +0.2
1,107,157 - B158DRAFT_1066 0.81 +0.1
1,107,157 - B158DRAFT_1066 0.81 -0.2
1,107,157 - B158DRAFT_1066 0.81 -3.5
1,107,157 - B158DRAFT_1066 0.81 -0.0
1,107,157 - B158DRAFT_1066 0.81 -2.5
1,107,157 - B158DRAFT_1066 0.81 -1.1
1,107,157 - B158DRAFT_1066 0.81 -0.5
1,107,186 + B158DRAFT_1066 0.83 -0.0
1,107,256 - B158DRAFT_1066 0.88 -1.6
1,107,311 - -0.1
1,107,334 + -1.4
1,107,344 + +0.7
1,107,344 + -2.6
1,107,344 + -0.4
1,107,344 + -1.4
1,107,344 + -0.2
1,107,352 - -3.9
1,107,352 - +0.4
1,107,352 - -1.4
1,107,352 - -0.3
1,107,352 - +0.6
1,107,352 - -0.8
1,107,352 - +0.0
1,107,352 - +1.1
1,107,354 + -0.8
1,107,364 + +0.1
1,107,364 + -2.0
1,107,367 - -2.3
1,107,391 - +0.3
1,107,411 - +1.5
1,107,417 - -0.1
1,107,468 - -0.9
1,107,610 - B158DRAFT_1067 0.54 +0.4
1,107,615 + B158DRAFT_1067 0.56 +1.2
1,107,621 + B158DRAFT_1067 0.58 -0.4
1,107,631 + B158DRAFT_1067 0.62 -0.2
1,107,712 + -0.1
1,107,714 - +0.6
1,107,736 - -0.7
1,107,762 + -0.4
1,107,770 - -0.6
1,107,777 - +0.6
1,107,814 - +0.4
1,108,487 - +0.1
1,108,509 - +0.4

Or see this region's nucleotide sequence